Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010047

Physical Location & Seq

Genomic Coordinates Reverse (-)

8510020 .. 8511395

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G19720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGAGGAGAATATTGAACGATGCATTGAGAACGATCGTGAATGCTGAGAAGCGAGGGAAAGCTTCGGTGGAGTTGAAACCTGTCTCTACCGTAATGTCTTCGTTTCTCAAAATCATGAAAGAGAAAGGGTACATCAAGAACTTCCAAGTCCATGATCCACACAGAGTTGGAAGAATAACTGTTGATCTACAAGGAAGGGTTAATGATTGCAAAGCTCTCACTTATAGGCAGGACGTTAAGGCAAATGAGATCGGGCAATACACAGAACGCACACTTCCAACGCGCCAGTGGGGTTATATAGTGATTACAACTCCCGATGGCATTTTGGATCATGAAGAAGCTATTAAACGGAATGTGGGTGGTCAGGTTCTTGGTTTCTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

9.76

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	6 - 126	9.1e-21	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19720 AT4G29430
fragaria_vesca	FvH4_3g23910
malus_domestica	MD03G1189800.v1.1 MD11G1206100.v1.1
prunus_persica	Prupe.4G231400_v2.0.a1 Prupe.8G031000_v2.0.a1
pyrus_communis	pycom03g14270 pycom11g17890
rosa_chinensis	RchiOBHm_Chr5g0042421
rosa_laevigata	RLG00000034122
rosa_multiflora	Rmu_sc0002779.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038290
rosa_rugosa	Rorug05G0199800 Rorug05G0199900
rosa_samantha	Rh5AG286100 Rh5BG290800 Rh5CG322800 Rh5DG300500
rosa_wichuraiana	Rw5G026550 Rw5G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	286
AclWI	GGATC	2 cut(s)	152, 339
AfaI	GTAC	1 cut(s)	134
AgsI	TTSAA	2 cut(s)	19, 79
AluBI	AGCT	3 cut(s)	65, 218, 344
AluI	AGCT	3 cut(s)	65, 218, 344
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	2 cut(s)	152, 339
AspLEI	GCGC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	93
BccI	CCATC	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	91
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	39
BsiEI	CGRYCG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	36, 157, 187, 252, 331
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	1 cut(s)	286
BspHI	TCATGA	2 cut(s)	117, 334
BspPI	GGATC	2 cut(s)	152, 339
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	5 cut(s)	36, 157, 187, 252, 331
Bst4CI	ACNGT	2 cut(s)	94, 184
BstDEI	CTNAG	1 cut(s)	48
BstFNI	CGCG	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	39, 160, 190, 255, 334
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	5 cut(s)	36, 157, 187, 252, 331
BstMCI	CGRYCG	1 cut(s)	39
BstUI	CGCG	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	296
CciI	TCATGA	2 cut(s)	117, 334
CfoI	GCGC	1 cut(s)	288
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	3 cut(s)	118, 155, 335
CviJI	RGCY	3 cut(s)	65, 218, 344
CviKI_1	RGCY	3 cut(s)	65, 218, 344
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	5 cut(s)	38, 159, 189, 254, 333
DpnII	GATC	5 cut(s)	36, 157, 187, 252, 331
EcoT22I	ATGCAT	1 cut(s)	28
FaeI	CATG	3 cut(s)	121, 158, 338
FaiI	YATR	6 cut(s)	119, 156, 228, 300, 302, 336
FatI	CATG	3 cut(s)	117, 154, 334
GlaI	GCGC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	121, 158, 338
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	63
Hpy188III	TCNNGA	5 cut(s)	40, 118, 139, 317, 335
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	94, 184
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	26, 213
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	121, 158, 338
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	36, 157, 187, 252, 331
LpnPI	CCDG	4 cut(s)	96, 218, 302, 353
LweI	GCATC	1 cut(s)	13
MaeII	ACGT	1 cut(s)	237
MalI	GATC	5 cut(s)	38, 159, 189, 254, 333
MboI	GATC	5 cut(s)	36, 157, 187, 252, 331
MboII	GAAGA	3 cut(s)	93, 186, 350
MmeI	TCCRAC	2 cut(s)	151, 305
MnlI	CCTC	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	3 cut(s)	204, 240, 348
Mva1269I	GAATGC	1 cut(s)	49
MvnI	CGCG	1 cut(s)	286
NdeII	GATC	5 cut(s)	36, 157, 187, 252, 331
NlaIII	CATG	3 cut(s)	121, 158, 338
NsiI	ATGCAT	1 cut(s)	28
PagI	TCATGA	2 cut(s)	117, 334
PctI	GAATGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	39
PvuI	CGATCG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	204, 240, 348
Sau3AI	GATC	5 cut(s)	36, 157, 187, 252, 331
SetI	ASST	6 cut(s)	67, 85, 220, 240, 346, 372
SfaNI	GCATC	1 cut(s)	13
SspI	AATATT	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	94, 184
TaiI	ACGT	1 cut(s)	240
Tru1I	TTAA	3 cut(s)	204, 240, 348
Tru9I	TTAA	3 cut(s)	204, 240, 348
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	134, 351, 374
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.