Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0010047

Physical Location & Seq

Genomic Coordinates Reverse (-)

55716076 .. 55718780

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGTAGGATGATATTGAATAATGCATTGAGAGCAATAGTGAATGCAGAGAAAAGGCAGAAAGCTACGGTGGAGTTGCAACCTATTTCCACAGTCATGTCATCTTTCCTGAAAATTATGAAAAATCGAGGATATATCAAGGATTTTGAAGTTTTTGAGCCGCATAGAGTGGGAAAAATTACAGTTCAACTACAAGGCAGGGTTAATGATTGTCGAGCTCTTACTTACAGGCAAGATGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGCGCAAGCTTCCAACGCACCAGTGGGGTTATGTTGTGATTACAACTCCTGAAGGTGTAATGGATCACGAAGAGGCTATTACTCGTAATGTGGGGGTCAGGTTCTTGGCTATTTTCATTAGCTATCTTCTTAATGGAAACAGAAAAGGTTCTCCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

142

Amino Acids

16.36

Weight (kDa)

10.0

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	6 - 126	5.7e-19	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19720 AT4G29430
fragaria_vesca	FvH4_3g23910
malus_domestica	MD03G1189800.v1.1 MD11G1206100.v1.1
prunus_persica	Prupe.4G231400_v2.0.a1 Prupe.8G031000_v2.0.a1
pyrus_communis	pycom03g14270 pycom11g17890
rosa_chinensis	RchiOBHm_Chr5g0042421
rosa_laevigata	RLG00000034122
rosa_multiflora	Rmu_sc0002779.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038290
rosa_rugosa	Rorug05G0199800 Rorug05G0199900
rosa_samantha	Rh5AG286100 Rh5BG290800 Rh5CG322800 Rh5DG300500
rosa_wichuraiana	Rw5G026550 Rw5G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	339
AcuI	CTGAAG	1 cut(s)	339
AgsI	TTSAA	4 cut(s)	19, 149, 188, 257
AluBI	AGCT	4 cut(s)	65, 218, 277, 390
AluI	AGCT	4 cut(s)	65, 218, 277, 390
Alw21I	GWGCWC	1 cut(s)	220
AlwI	GGATC	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	415
AspLEI	GCGC	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bse1I	ACTGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	289
BsiHKAI	GWGCWC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	331
BspACI	CCGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	70, 94, 184
Bst6I	CTCTTC	2 cut(s)	252, 333
BstC8I	GCNNGC	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	273
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 283
BtsCI	GGATG	1 cut(s)	15
BtsIMutI	CAGTG	1 cut(s)	296
Cac8I	GCNNGC	1 cut(s)	275
CfoI	GCGC	1 cut(s)	273
CviAII	CATG	2 cut(s)	97, 426
CviJI	RGCY	7 cut(s)	65, 160, 218, 277, 344, 377, 390
CviKI_1	RGCY	7 cut(s)	65, 160, 218, 277, 344, 377, 390
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	2 cut(s)	252, 333
EarI	CTCTTC	2 cut(s)	252, 333
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	339
EcoICRI	GAGCTC	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	220
FaeI	CATG	2 cut(s)	100, 429
FaiI	YATR	7 cut(s)	98, 119, 135, 165, 264, 300, 427
FatI	CATG	2 cut(s)	96, 425
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	161
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	2 cut(s)	100, 429
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	275
Hpy188III	TCNNGA	3 cut(s)	109, 317, 335
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	3 cut(s)	70, 94, 184
HpyCH4V	TGCA	3 cut(s)	26, 47, 79
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 283
Hsp92II	CATG	2 cut(s)	100, 429
HspAI	GCGC	1 cut(s)	271
Kzo9I	GATC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	122, 184, 214, 302, 330, 352
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	3 cut(s)	269, 350, 386
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	2 cut(s)	114, 177
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	122, 334
Mph1103I	ATGCAT	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	415
MseI	TTAA	2 cut(s)	204, 399
MslI	CAYNNNNRTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	32, 283
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	100, 429
NsiI	ATGCAT	1 cut(s)	28
PctI	GAATGC	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	220
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	204, 399
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	8 cut(s)	67, 85, 220, 279, 325, 371, 392, 418
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	114, 177
SsiI	CCGC	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	70, 94, 184
TaqI	TCGA	2 cut(s)	127, 214
TasI	AATT	2 cut(s)	114, 177
TauI	GCSGC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	204, 399
Tru9I	TTAA	2 cut(s)	204, 399
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	134, 373
TspRI	CASTG	1 cut(s)	296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	415
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.