Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010047

Physical Location & Seq

Genomic Coordinates Reverse (-)

19786444 .. 19788445

Gene Structure 2002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0199900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGTTTCCATGTCAAAGCCTCGAGCAAGAGTGAGAGATAGGATAAGTGCGTTACCAGATGCACTTCTTTCTCACATACTCTCTTTCCTCCCAACACTGTGTGCTGTGAGGACCAGCATATTGTCTGCAAGATGGAGGAACATGTGGACTTCTCTTCCCAATCTAGACTTTGATAACGAAAGAGATTCATTTTTGGGTGTCACGATAGGTCCCTATGGCAAGGATCGTTTTACGACGTTTGTTGAGCGTGTATTTCTATACCGCAATTCATGCGACATTAAAAAGCTTGGTCTTAAAATTCGTTATCCTGTAGATTTTTCTCATATCGATGATTGGATCTGCACAGCCGTTAGGCGTAATATTTTGGAAGTTGATCTTCACGTCTTCTCTGATGAAATTGAAGAAGGAGAGGGTTTTCAGTTCCCTCAGAGCCTTTTTATGTGCAAAACTCTGAAGGTTTTGAAATTGTATTCAAATTCATGGACTATTAAGTATCCTCCTCCTCCGCCAGGGTGTTTTCCAAATCTTAAGTTCCTCCATGTTGAAATTGATTTCCCCGATCCAGACTCACTGAAAAATCTTTTTACTCGCTGCCCTATGCTTGAGGAGTTGTCTATACATGGATTCAGTGATTGTGCTAGGGTTTATGATATCTACGTATGTGCGCCCGAATTGAAGACGTTGAGAATAAAAGTGTCTGATCCTTATAAGAATTGCTATTTTGTCATTAATGCCCCAAAGCTTGAATACATTGATATCAAGTCAGCTGCTCTATCAAATTATTATTTAAAGAATTCAAACGGCCTATTCAATGCCAGTATTGTTTTTGAAGAACATTTTTCTAATTATAAAGATGAATACCAACTGTGCCGTTTAGCTGAGCTGTTGTCACAAAGAACAAATGTCAATCATCTTTCTCTTGAAATCCATGATCATTGTCTTCAGGCTTGGTATCATCCTTTTGATTTTGGTAATGTGAACCAAATGAAGCTGGTACTTCATGATTGCTATTACTGGGAAGTACTAGCAGTGCTGCTCACAAAATCACCTAAACTTGTAGATCTTGCCTTGGAACATAGAATTAAATCTCATGATGAATATTCATTGCCTCAATGGAAGCAACCAGAGTCTGTTCCTGCTTGTTTGCTGAGAAATCTCTGCACCATTACCATAAAGGGATTCAGGGGTCATCAGGTTGAGATGGATGTAGCACAGTACATGTTAAAGAATGGTCACGTTTTGAATAACATGACAATCTATACAGGCCATCTGTGTAAGAAAGAGAAGGAGTTATACAAGAAATTTTTGATGTTTGAAAGGCGTTCAATGACTTGTAAAGTTGAATTTATCAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

452

Amino Acids

52.85

Weight (kDa)

8.22

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 54	1e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	90 - 427	2.9e-16	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	110 - 253	9.9e-11	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	374 - 419	5.4e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19720 AT4G29430
fragaria_vesca	FvH4_3g23910
malus_domestica	MD03G1189800.v1.1 MD11G1206100.v1.1
prunus_persica	Prupe.4G231400_v2.0.a1 Prupe.8G031000_v2.0.a1
pyrus_communis	pycom03g14270 pycom11g17890
rosa_chinensis	RchiOBHm_Chr5g0042421
rosa_laevigata	RLG00000034122
rosa_multiflora	Rmu_sc0002779.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038290
rosa_rugosa	Rorug05G0199800 Rorug05G0199900
rosa_samantha	Rh5AG286100 Rh5BG290800 Rh5CG322800 Rh5DG300500
rosa_wichuraiana	Rw5G026550 Rw5G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	708, 849
AciI	CCGC	2 cut(s)	262, 506
AclWI	GGATC	4 cut(s)	231, 344, 554, 695
AcsI	RAATTY	5 cut(s)	297, 475, 793, 1301, 1343
AcuI	CTGAAG	2 cut(s)	473, 926
AdeI	CACNNNGTG	1 cut(s)	101
AfaI	GTAC	3 cut(s)	996, 1023, 1217
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	2 cut(s)	141, 1218
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	508
AluBI	AGCT	6 cut(s)	286, 742, 767, 878, 883, 991
AluI	AGCT	6 cut(s)	286, 742, 767, 878, 883, 991
AlwI	GGATC	4 cut(s)	231, 344, 554, 695
AlwNI	CAGNNNCTG	1 cut(s)	1130
Ama87I	CYCGRG	1 cut(s)	21
AoxI	GGCC	2 cut(s)	802, 1264
ApeKI	GCWGC	3 cut(s)	591, 767, 1033
ApoI	RAATTY	5 cut(s)	297, 475, 793, 1301, 1343
AseI	ATTAAT	1 cut(s)	729
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	2 cut(s)	111, 209
AsuHPI	GGTGA	1 cut(s)	1038
AvaI	CYCGRG	1 cut(s)	21
AvaII	GGWCC	2 cut(s)	111, 209
BarI	GAAGNNNNNNTAC	2 cut(s)	1277, 1309
BbsI	GAAGAC	3 cut(s)	376, 683, 932
BbvI	GCAGC	3 cut(s)	578, 754, 1020
BccI	CCATC	3 cut(s)	126, 1195, 1275
BceAI	ACGGC	3 cut(s)	332, 817, 855
BciT130I	CCWGG	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	1 cut(s)	931
BfaI	CTAG	3 cut(s)	164, 639, 1025
BfmI	CTRYAG	1 cut(s)	309
BfrI	CTTAAG	1 cut(s)	527
BfuI	GTATCC	1 cut(s)	504
BglII	AGATCT	1 cut(s)	1060
BisI	GCNGC	3 cut(s)	592, 768, 1034
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	3 cut(s)	593, 769, 1035
BmcAI	AGTACT	1 cut(s)	1023
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	2 cut(s)	111, 209
BmeT110I	CYCGRG	1 cut(s)	21
BmgBI	CACGTC	1 cut(s)	382
BmgT120I	GGNCC	2 cut(s)	111, 209
BmiI	GGNNCC	1 cut(s)	211
BmrFI	CCNGG	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	1024
BmsI	GCATC	1 cut(s)	49
BmuI	ACTGGG	1 cut(s)	1024
BpiI	GAAGAC	3 cut(s)	376, 683, 932
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	623
Bsa29I	ATCGAT	1 cut(s)	327
BsaAI	YACGTR	1 cut(s)	658
BsaJI	CCNNGG	2 cut(s)	509, 1068
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	2 cut(s)	816, 1019
Bse3DI	GCAATG	1 cut(s)	1103
BseBI	CCWGG	1 cut(s)	510
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	509, 1068
BseGI	GGATG	2 cut(s)	955, 1210
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMI	GCAATG	1 cut(s)	1103
BseMII	CTCAG	3 cut(s)	440, 870, 1139
BseNI	ACTGG	2 cut(s)	816, 1019
BseRI	GAGGAG	3 cut(s)	489, 492, 620
BseXI	GCAGC	3 cut(s)	578, 754, 1020
BsgI	GTGCAG	2 cut(s)	325, 1144
BshFI	GGCC	2 cut(s)	804, 1266
BshVI	ATCGAT	1 cut(s)	327
BsiHKCI	CYCGRG	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	804, 1266
BsoBI	CYCGRG	1 cut(s)	21
Bsp143I	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
Bsp1720I	GCTNAGC	1 cut(s)	879
BspACI	CCGC	2 cut(s)	262, 506
BspANI	GGCC	2 cut(s)	804, 1266
BspCNI	CTCAG	3 cut(s)	439, 871, 1140
BspDI	ATCGAT	1 cut(s)	327
BspHI	TCATGA	2 cut(s)	1000, 1090
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	4 cut(s)	231, 344, 554, 695
BspTI	CTTAAG	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	1103
BsrI	ACTGG	2 cut(s)	816, 1019
BssECI	CCNNGG	2 cut(s)	509, 1068
BssMI	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
BssT1I	CCWWGG	1 cut(s)	1068
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	3 cut(s)	99, 867, 1215
Bst6I	CTCTTC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	658
BstDEI	CTNAG	3 cut(s)	426, 879, 1148
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	955, 1210
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	7 cut(s)	226, 339, 376, 562, 703, 934, 1063
BstMBI	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	510
BstNSI	RCATGY	2 cut(s)	145, 1222
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	309
BstSNI	TACGTA	1 cut(s)	658
BstV1I	GCAGC	3 cut(s)	578, 754, 1020
BstV2I	GAAGAC	3 cut(s)	376, 683, 932
BstX2I	RGATCY	2 cut(s)	336, 1060
BstYI	RGATCY	2 cut(s)	336, 1060
Bsu15I	ATCGAT	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	804, 1266
BsuTUI	ATCGAT	1 cut(s)	327
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	2 cut(s)	955, 1210
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	4 cut(s)	95, 569, 634, 1035
CaiI	CAGNNNCTG	1 cut(s)	1130
CciI	TCATGA	2 cut(s)	1000, 1090
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	2 cut(s)	111, 209
ClaI	ATCGAT	1 cut(s)	327
Csp6I	GTAC	3 cut(s)	995, 1022, 1216
CviQI	GTAC	3 cut(s)	995, 1022, 1216
DdeI	CTNAG	3 cut(s)	426, 879, 1148
DpnI	GATC	7 cut(s)	225, 338, 375, 561, 702, 933, 1062
DpnII	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
DraI	TTTAAA	1 cut(s)	789
DraIII	CACNNNGTG	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
EciI	GGCGGA	1 cut(s)	495
Eco105I	TACGTA	1 cut(s)	658
Eco130I	CCWWGG	1 cut(s)	1068
Eco32I	GATATC	2 cut(s)	652, 757
Eco47I	GGWCC	2 cut(s)	111, 209
Eco57I	CTGAAG	2 cut(s)	473, 926
Eco88I	CYCGRG	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	508
EcoRV	GATATC	2 cut(s)	652, 757
EcoT14I	CCWWGG	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	1068
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	3 cut(s)	592, 768, 1034
FokI	GGATG	2 cut(s)	942, 1217
Fsp4HI	GCNGC	3 cut(s)	592, 768, 1034
FspBI	CTAG	3 cut(s)	164, 639, 1025
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	3 cut(s)	592, 768, 1034
HaeIII	GGCC	2 cut(s)	804, 1266
HhaI	GCGC	1 cut(s)	667
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HindIII	AAGCTT	2 cut(s)	284, 740
HinfI	GANTC	5 cut(s)	185, 566, 624, 1127, 1179
HphI	GGTGA	1 cut(s)	1038
Hpy166II	GTNNAC	2 cut(s)	147, 979
Hpy188I	TCNGA	4 cut(s)	391, 429, 453, 700
Hpy188III	TCNNGA	7 cut(s)	164, 202, 563, 920, 1001, 1091, 1351
Hpy8I	GTNNAC	2 cut(s)	147, 979
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	398, 448, 1279
HpyCH4III	ACNGT	3 cut(s)	99, 867, 1215
HpyCH4IV	ACGT	5 cut(s)	236, 381, 657, 680, 1236
HpyCH4V	TGCA	5 cut(s)	62, 128, 342, 444, 1161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpyF3I	CTNAG	3 cut(s)	426, 879, 1148
HpySE526I	ACGT	5 cut(s)	236, 381, 657, 680, 1236
HspAI	GCGC	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
Lsp1109I	GCAGC	3 cut(s)	578, 754, 1020
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	3 cut(s)	164, 639, 1025
MaeII	ACGT	5 cut(s)	236, 381, 657, 680, 1236
MaeIII	GTNAC	4 cut(s)	51, 199, 888, 1232
MalI	GATC	7 cut(s)	225, 338, 375, 561, 702, 933, 1062
MboI	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
MboII	GAAGA	7 cut(s)	146, 368, 376, 413, 688, 842, 932
MflI	RGATCY	2 cut(s)	336, 1060
MlyI	GAGTC	2 cut(s)	560, 1136
MseI	TTAA	8 cut(s)	279, 294, 489, 528, 729, 788, 1083, 1223
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	767
MspCI	CTTAAG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	510
MvaI	CCWGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	270
NdeII	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	199, 888, 1232
NspI	RCATGY	2 cut(s)	145, 1222
PaeR7I	CTCGAG	1 cut(s)	21
PagI	TCATGA	2 cut(s)	1000, 1090
PciI	ACATGT	2 cut(s)	141, 1218
PfeI	GAWTC	3 cut(s)	185, 624, 1179
PkrI	GCNGC	3 cut(s)	593, 769, 1035
PleI	GAGTC	2 cut(s)	560, 1135
PpsI	GAGTC	2 cut(s)	560, 1135
Ppu21I	YACGTR	1 cut(s)	658
PpuMI	RGGWCCY	1 cut(s)	209
PscI	ACATGT	2 cut(s)	141, 1218
PshBI	ATTAAT	1 cut(s)	729
PsiI	TTATAA	2 cut(s)	708, 849
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	2 cut(s)	111, 209
PspPPI	RGGWCCY	1 cut(s)	209
PspXI	VCTCGAGB	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	1130
PsuI	RGATCY	2 cut(s)	336, 1060
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	3 cut(s)	996, 1023, 1217
RsaNI	GTAC	3 cut(s)	995, 1022, 1216
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	8 cut(s)	279, 294, 489, 528, 729, 788, 1083, 1223
SatI	GCNGC	3 cut(s)	592, 768, 1034
Sau3AI	GATC	7 cut(s)	223, 336, 373, 559, 700, 931, 1060
Sau96I	GGNCC	2 cut(s)	111, 209
ScaI	AGTACT	1 cut(s)	1023
SchI	GAGTC	2 cut(s)	560, 1136
ScrFI	CCNGG	1 cut(s)	510
SfaNI	GCATC	1 cut(s)	49
SfcI	CTRYAG	1 cut(s)	309
Sfr274I	CTCGAG	1 cut(s)	21
SinI	GGWCC	2 cut(s)	111, 209
SlaI	CTCGAG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	3 cut(s)	21, 527, 602
SmoI	CTYRAG	3 cut(s)	21, 527, 602
SnaBI	TACGTA	1 cut(s)	658
SsiI	CCGC	2 cut(s)	262, 506
SspI	AATATT	2 cut(s)	361, 1100
SspMI	CTAG	3 cut(s)	164, 639, 1025
StyD4I	CCNGG	1 cut(s)	508
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	3 cut(s)	99, 867, 1215
TaiI	ACGT	5 cut(s)	239, 384, 660, 683, 1239
TaqI	TCGA	2 cut(s)	22, 327
TatI	WGTACW	2 cut(s)	1021, 1215
TfiI	GAWTC	3 cut(s)	185, 624, 1179
Tru1I	TTAA	8 cut(s)	279, 294, 489, 528, 729, 788, 1083, 1223
Tru9I	TTAA	8 cut(s)	279, 294, 489, 528, 729, 788, 1083, 1223
TscAI	CASTG	4 cut(s)	102, 576, 634, 1035
TseFI	GTSAC	3 cut(s)	199, 888, 1232
TseI	GCWGC	3 cut(s)	591, 767, 1033
Tsp45I	GTSAC	3 cut(s)	199, 888, 1232
TspDTI	ATGAA	9 cut(s)	177, 258, 408, 468, 870, 989, 1001, 1092, 1110
TspRI	CASTG	4 cut(s)	102, 576, 634, 1035
Vha464I	CTTAAG	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	111, 209
VspI	ATTAAT	1 cut(s)	729
XagI	CCTNNNNNAGG	1 cut(s)	507
XapI	RAATTY	5 cut(s)	297, 475, 793, 1301, 1343
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	2 cut(s)	145, 1222
XhoI	CTCGAG	1 cut(s)	21
XspI	CTAG	3 cut(s)	164, 639, 1025
ZrmI	AGTACT	1 cut(s)	1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.