AT4G29430

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010047
Physical Location & Seq
Forward (+)
14472303 .. 14473621
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29430.1

Sequence Viewer

Length: 390 bp
ATGGGGAGGAGGATTTTGAACGATGCGTTGAGGACGATTGTGAATGCTGAGAGACGAGGAAAAGCTTCGGTGGAGCTCAAACCAATCTCCACCGTTATGTCTTCGTTCTTGAGAATCATGAAGGAGAAAGGTTATATCAAGAACTTTCAAGTGTATGATCCACATAGAGTTGGGAGAATAACAGTTGATCTGCAAGGGAGGGTTAATGACTGCAAAGCTCTTACCTACAGGCAAGACGTTAGGGCAAAAGAGATTGAGAAATACACTGAACGCACACTTCCAACACGTCAGTGGGGTTATGTTGTAATCACAACTCCGGATGGGATTTTGGACCATGAAGAAGCAATCAAACGGAATGTGGGTGGTCAGGTTCTTGGCTTCTTTTACTGA

Protein Analysis

129

Amino Acids

14.92

Weight (kDa)

9.83

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 6 - 129 8e-21 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 316
AclWI GGATC 1 cut(s) 152
AflIII ACRYGT 1 cut(s) 284
AgsI TTSAA 2 cut(s) 19, 149
AjiI CACGTC 1 cut(s) 287
AleI CACNNNNGTG 1 cut(s) 289
AluBI AGCT 3 cut(s) 65, 76, 218
AluI AGCT 3 cut(s) 65, 76, 218
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 152
Aor13HI TCCGGA 1 cut(s) 316
Asp700I GAANNNNTTC 1 cut(s) 64
AspS9I GGNCC 1 cut(s) 331
AvaII GGWCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 93
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 46
BfmI CTRYAG 1 cut(s) 226
Bme18I GGWCC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 130
BsaWI WCCGGW 1 cut(s) 316
BseAI TCCGGA 1 cut(s) 316
BseGI GGATG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 39
BseRI GAGGAG 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 317
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 78
Bsp13I TCCGGA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 157, 187
BspCNI CTCAG 1 cut(s) 40
BspEI TCCGGA 1 cut(s) 316
BspHI TCATGA 1 cut(s) 117
BspPI GGATC 1 cut(s) 152
BssMI GATC 2 cut(s) 157, 187
Bst4CI ACNGT 2 cut(s) 94, 184
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 160, 190
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 157, 187
BstSFI CTRYAG 1 cut(s) 226
BstV2I GAAGAC 1 cut(s) 93
BtrI CACGTC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 325
BtsIMutI CAGTG 2 cut(s) 264, 296
CciI TCATGA 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 331
CviAII CATG 2 cut(s) 118, 335
CviJI RGCY 4 cut(s) 65, 76, 218, 378
CviKI_1 RGCY 4 cut(s) 65, 76, 218, 378
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 159, 189
DpnII GATC 2 cut(s) 157, 187
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 2 cut(s) 121, 338
FaiI YATR 7 cut(s) 98, 119, 135, 156, 165, 300, 336
FatI CATG 2 cut(s) 117, 334
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 78
HapII CCGG 1 cut(s) 317
Hin1II CATG 2 cut(s) 121, 338
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 114
HpaII CCGG 1 cut(s) 317
Hpy188III TCNNGA 4 cut(s) 109, 118, 139, 317
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 2 cut(s) 94, 184
HpyCH4IV ACGT 2 cut(s) 237, 286
HpyCH4V TGCA 2 cut(s) 193, 213
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 2 cut(s) 237, 286
Hsp92II CATG 2 cut(s) 121, 338
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 157, 187
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 3 cut(s) 214, 330, 353
LweI GCATC 1 cut(s) 13
MaeII ACGT 2 cut(s) 237, 286
MalI GATC 2 cut(s) 159, 189
MboI GATC 2 cut(s) 157, 187
MboII GAAGA 2 cut(s) 93, 350
MhlI GDGCHC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 4 cut(s) 3, 24, 50, 192
MroI TCCGGA 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 64
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 95, 289
MspI CCGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 49
NdeII GATC 2 cut(s) 157, 187
NlaIII CATG 2 cut(s) 121, 338
OliI CACNNNNGTG 1 cut(s) 289
PagI TCATGA 1 cut(s) 117
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 114
Psp124BI GAGCTC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 331
RseI CAYNNNNRTG 2 cut(s) 95, 289
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 2 cut(s) 157, 187
Sau96I GGNCC 1 cut(s) 331
SduI GDGCHC 1 cut(s) 78
SetI ASST 8 cut(s) 67, 78, 133, 220, 227, 240, 289, 372
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 2 cut(s) 95, 289
SmlI CTYRAG 1 cut(s) 109
SmoI CTYRAG 1 cut(s) 109
SstI GAGCTC 1 cut(s) 78
TaaI ACNGT 2 cut(s) 94, 184
TaiI ACGT 2 cut(s) 240, 289
TfiI GAWTC 1 cut(s) 114
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 271, 296
TspDTI ATGAA 2 cut(s) 134, 351
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 2 cut(s) 271, 296
VpaK11BI GGWCC 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.