Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010047

Physical Location & Seq

Genomic Coordinates Forward (+)

37052303 .. 37054847

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034122

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCCTTAAGAGGCTATTTCATTTTGTCATATGAGGAAGAGAATCTCTGTGTCGTCGGAATCCAAAACATTTTCTCAAACTCGGAGGCTTCGGCTAGGTCCTTCTACTCCACACTCGTTCGCCACCCCTTTGTTCGGTTCCTCGTTAGATTTCCCGATCAACTTGTTGGGTTTCTCCGACTAAGGGTCGAGAGACTTCATCTGGGTCTCTGGGATTTTTGGGTTTGCATTTTTCAAAAGACAAGGATGGGTAGGATGATATTGAATAATGCATTGAGAGCAATAGTGAATGCAGAGAAAAGGCAGAAAGCTACGGTGGAGTTGCAACCTATTTCCACAGTCATGTCATCTTTCCTGAAAATTATGAAAAATCGAGGATATATCAAGGATTTTGAAGTTTTTGAGCCGCATAGAGTGGGGAAAATTACAGTTCAACTACAAGGCAGGGTTAATGATTGTCGAGCTCTTACTTACAGGCAAGACGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGTGCAAGCTTCCAACGCACCAGTGGGGTTATGTTGTGATTACAACTCCTGAAGGTGTAATGGATCACGAAGAGGCTATTACTCGTAATGTGGGGGGTCAGGTTCTTGGCTATTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

212

Amino Acids

24.68

Weight (kDa)

9.53

Isoelectric Point (pI)

40.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	88 - 209	3.4e-21	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19720 AT4G29430
fragaria_vesca	FvH4_3g23910
malus_domestica	MD03G1189800.v1.1 MD11G1206100.v1.1
prunus_persica	Prupe.4G231400_v2.0.a1 Prupe.8G031000_v2.0.a1
pyrus_communis	pycom03g14270 pycom11g17890
rosa_chinensis	RchiOBHm_Chr5g0042421
rosa_laevigata	RLG00000034122
rosa_multiflora	Rmu_sc0002779.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038290
rosa_rugosa	Rorug05G0199800 Rorug05G0199900
rosa_samantha	Rh5AG286100 Rh5BG290800 Rh5CG322800 Rh5DG300500
rosa_wichuraiana	Rw5G026550 Rw5G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	486
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	585
AcyI	GRCGYC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	11, 135, 184
AflII	CTTAAG	1 cut(s)	7
AgsI	TTSAA	5 cut(s)	236, 265, 395, 434, 503
AhdI	GACNNNNNGTC	1 cut(s)	185
AluBI	AGCT	3 cut(s)	311, 464, 523
AluI	AGCT	3 cut(s)	311, 464, 523
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	2 cut(s)	187, 212
AlwI	GGATC	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	99
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	466
BccI	CCATC	1 cut(s)	241
BcoDI	GTCTC	2 cut(s)	187, 212
BfaI	CTAG	1 cut(s)	96
BfrI	CTTAAG	1 cut(s)	7
BisI	GCNGC	1 cut(s)	407
BlsI	GCNGC	1 cut(s)	408
Bme18I	GGWCC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	483
BsaI	GGTCTC	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 135, 184
Bse1I	ACTGG	1 cut(s)	535
BseGI	GGATG	2 cut(s)	252, 261
BseLI	CCNNNNNNNGG	3 cut(s)	11, 135, 184
BseNI	ACTGG	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	11, 135, 184
BsmAI	GTCTC	2 cut(s)	187, 212
BsmI	GAATGC	1 cut(s)	295
Bso31I	GGTCTC	1 cut(s)	212
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	157, 577
BspACI	CCGC	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	585
BspTI	CTTAAG	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	535
BssMI	GATC	2 cut(s)	157, 577
BssNI	GRCGYC	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	316, 340, 430
Bst6I	CTCTTC	3 cut(s)	33, 498, 579
BstACI	GRCGYC	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	521
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	252, 261
BstKTI	GATC	2 cut(s)	160, 580
BstMAI	GTCTC	2 cut(s)	187, 212
BstMBI	GATC	2 cut(s)	157, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	278, 529
BtsCI	GGATG	2 cut(s)	252, 261
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	99
CviAII	CATG	1 cut(s)	343
CviJI	RGCY	9 cut(s)	15, 89, 95, 311, 406, 464, 523, 590, 624
CviKI_1	RGCY	9 cut(s)	15, 89, 95, 311, 406, 464, 523, 590, 624
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	2 cut(s)	159, 579
DpnII	GATC	2 cut(s)	157, 577
DriI	GACNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	3 cut(s)	33, 498, 579
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EarI	CTCTTC	3 cut(s)	33, 498, 579
Ecl136II	GAGCTC	1 cut(s)	464
Eco24I	GRGCYC	1 cut(s)	466
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	464
Eco57I	CTGAAG	1 cut(s)	585
EcoICRI	GAGCTC	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	99
EcoT22I	ATGCAT	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	466
FaeI	CATG	1 cut(s)	346
FaiI	YATR	8 cut(s)	31, 33, 344, 365, 381, 411, 510, 546
FatI	CATG	1 cut(s)	342
FauNDI	CATATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	407
FokI	GGATG	2 cut(s)	259, 268
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	407
FspBI	CTAG	1 cut(s)	96
GluI	GCNGC	1 cut(s)	407
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	2 cut(s)	43, 60
Hpy188I	TCNGA	3 cut(s)	59, 85, 179
Hpy188III	TCNNGA	5 cut(s)	155, 190, 355, 563, 581
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	112, 560
HpyCH4III	ACNGT	3 cut(s)	316, 340, 430
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	5 cut(s)	228, 272, 293, 325, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	278, 529
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	483
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	157, 577
LpnPI	CCDG	8 cut(s)	188, 196, 368, 430, 460, 548, 576, 599
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	483
MalI	GATC	2 cut(s)	159, 579
MboI	GATC	2 cut(s)	157, 577
MboII	GAAGA	3 cut(s)	50, 515, 596
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	2 cut(s)	360, 423
MmeI	TCCRAC	3 cut(s)	37, 202, 551
MnlI	CCTC	6 cut(s)	5, 28, 79, 152, 368, 580
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	2 cut(s)	8, 450
MslI	CAYNNNNRTG	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	7
Mva1269I	GAATGC	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	278, 529
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	2 cut(s)	157, 577
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	1 cut(s)	140
NsiI	ATGCAT	1 cut(s)	274
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	43, 60
PkrI	GCNGC	1 cut(s)	408
PpuMI	RGGWCCY	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	1 cut(s)	99
PspPPI	RGGWCCY	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	8, 450
SatI	GCNGC	1 cut(s)	407
Sau3AI	GATC	2 cut(s)	157, 577
Sau96I	GGNCC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	8 cut(s)	101, 313, 331, 466, 486, 525, 571, 618
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	2 cut(s)	360, 423
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	1 cut(s)	96
SstI	GAGCTC	1 cut(s)	466
TaaI	ACNGT	3 cut(s)	316, 340, 430
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	3 cut(s)	189, 373, 460
TasI	AATT	2 cut(s)	360, 423
TauI	GCSGC	1 cut(s)	409
TfiI	GAWTC	2 cut(s)	43, 60
Tru1I	TTAA	2 cut(s)	8, 450
Tru9I	TTAA	2 cut(s)	8, 450
TscAI	CASTG	1 cut(s)	542
TspDTI	ATGAA	4 cut(s)	10, 188, 380, 620
TspRI	CASTG	1 cut(s)	542
Vha464I	CTTAAG	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	534
XspI	CTAG	1 cut(s)	96
ZraI	GACGTC	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.