FvH4_3g23910

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0010047
Physical Location & Seq
Forward (+)
17002317 .. 17005099
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23910.t1

Sequence Viewer

Length: 390 bp
ATGGGTAGGATGATTTTGAATAATGCATTGAGAGCAATAGTGAATGCAGAGAAAAGGCAGAAAGCTTCTGTGGAGCTGCAACCTGTCTCCACAGTCATGTCATCTTTCCTGAAAATTATGAAAAATCGAGGATATATCAAGGATTTTCAAGTTTTTGACCCGCATAGAGTGGGGAAAATTACAGTTCAACTACAAGGAAGGGTTAATGATTGTCGAGCTCTTACTTACAGGCAAGACGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGCGCAAGCTTCCTACGCACCAGTGGGGTTATGTTGTGATTACAACTCCTGAAGGTGTAATGGATCATGAAGAGGCTATTACTCGTAATGTCGGGGGTCAGGTTCTTGGCTATTTTCATTAG

Protein Analysis

130

Amino Acids

14.87

Weight (kDa)

9.83

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 6 - 127 8.4e-22 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 237
AgsI TTSAA 4 cut(s) 19, 149, 188, 257
AluBI AGCT 4 cut(s) 65, 76, 218, 277
AluI AGCT 4 cut(s) 65, 76, 218, 277
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 91
AlwI GGATC 1 cut(s) 339
ApeKI GCWGC 1 cut(s) 76
AspLEI GCGC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 91
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
BsaHI GRCGYC 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 220
BsmAI GTCTC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 1 cut(s) 161
BspHI TCATGA 1 cut(s) 334
BspPI GGATC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 289
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 2 cut(s) 94, 184
Bst6I CTCTTC 2 cut(s) 252, 333
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 275
BstF5I GGATG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 1 cut(s) 91
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 32, 283
BstV1I GCAGC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 275
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 273
CviAII CATG 2 cut(s) 97, 335
CviJI RGCY 6 cut(s) 65, 76, 218, 277, 344, 378
CviKI_1 RGCY 6 cut(s) 65, 76, 218, 277, 344, 378
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 252, 333
EarI CTCTTC 2 cut(s) 252, 333
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 2 cut(s) 100, 338
FaiI YATR 7 cut(s) 98, 119, 135, 165, 264, 300, 336
FatI CATG 2 cut(s) 96, 334
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 77
GlaI GCGC 1 cut(s) 272
GluI GCNGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 2 cut(s) 100, 338
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 2 cut(s) 63, 275
Hpy188III TCNNGA 3 cut(s) 109, 317, 335
HpyAV CCTTC 2 cut(s) 192, 314
HpyCH4III ACNGT 2 cut(s) 94, 184
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 3 cut(s) 26, 47, 79
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 283
HpySE526I ACGT 1 cut(s) 237
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 2 cut(s) 100, 338
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 6 cut(s) 96, 122, 214, 302, 330, 353
Lsp1109I GCAGC 1 cut(s) 63
MaeII ACGT 1 cut(s) 237
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 2 cut(s) 269, 350
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 114, 177
MnlI CCTC 2 cut(s) 122, 334
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 32, 283
NdeII GATC 1 cut(s) 331
NlaIII CATG 2 cut(s) 100, 338
NsiI ATGCAT 1 cut(s) 28
PagI TCATGA 1 cut(s) 334
PctI GAATGC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 95
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 1 cut(s) 331
SduI GDGCHC 1 cut(s) 220
SetI ASST 8 cut(s) 67, 78, 85, 220, 240, 279, 325, 372
SmiMI CAYNNNNRTG 1 cut(s) 95
Sse9I AATT 2 cut(s) 114, 177
SsiI CCGC 1 cut(s) 161
SstI GAGCTC 1 cut(s) 220
TaaI ACNGT 2 cut(s) 94, 184
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 127, 214
TasI AATT 2 cut(s) 114, 177
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 296
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 134, 351, 374
TspRI CASTG 1 cut(s) 296
ZraI GACGTC 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.