RchiOBHm_Chr5g0042421

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0010047
Physical Location & Seq
Forward (+)
37175318 .. 37178128
2811 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32082

Sequence Viewer

Length: 390 bp
ATGGGTAGGATGATATTGAATAATGCATTGAGAGCAATAGTGAATGCAGAGAAAAGGCAGAAAGCTACGGTGGAGTTGCAACCTATTTCCACAGTCATGTCATCTTTCCTGAAAATTATGAAAAATCGAGGATATATCAAGGATTTTGAAGTTTTTGAGCCACATAGAGTGGGGAAAATTACAGTTCAACTACAAGGCAGGGTTAATGATTGTCGAGCTCTTACTTACAGGCAAGACGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGCGCAAGCTTCCAACACACCAGTGGGGTTATGTTGTGATTACAACTCCTGAAGGTGTAATGGATCACGAAGAGGCTATTACTCGTAACGTGGGGGGTCAGGTTCTTGGCTATTTTCATTAG

Protein Analysis

129

Amino Acids

14.92

Weight (kDa)

9.71

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 6 - 127 5.2e-22 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AclWI GGATC 1 cut(s) 339
AcuI CTGAAG 1 cut(s) 339
AcyI GRCGYC 1 cut(s) 237
AgsI TTSAA 4 cut(s) 19, 149, 188, 257
AleI CACNNNNGTG 1 cut(s) 289
AluBI AGCT 3 cut(s) 65, 218, 277
AluI AGCT 3 cut(s) 65, 218, 277
Alw21I GWGCWC 1 cut(s) 220
AlwI GGATC 1 cut(s) 339
AspLEI GCGC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 220
BsmI GAATGC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 331
BspPI GGATC 1 cut(s) 339
BsrI ACTGG 1 cut(s) 289
BssMI GATC 1 cut(s) 331
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 3 cut(s) 70, 94, 184
Bst6I CTCTTC 2 cut(s) 252, 333
BstACI GRCGYC 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 275
BstF5I GGATG 1 cut(s) 15
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 275
CfoI GCGC 1 cut(s) 273
CviAII CATG 1 cut(s) 97
CviJI RGCY 6 cut(s) 65, 160, 218, 277, 344, 378
CviKI_1 RGCY 6 cut(s) 65, 160, 218, 277, 344, 378
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 252, 333
EarI CTCTTC 2 cut(s) 252, 333
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 339
EcoICRI GAGCTC 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 28
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 1 cut(s) 100
FaiI YATR 6 cut(s) 98, 119, 135, 165, 264, 300
FatI CATG 1 cut(s) 96
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 220
GlaI GCGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 273
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 1 cut(s) 100
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 275
Hpy188III TCNNGA 3 cut(s) 109, 317, 335
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 3 cut(s) 70, 94, 184
HpyCH4IV ACGT 2 cut(s) 237, 357
HpyCH4V TGCA 3 cut(s) 26, 47, 79
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 237, 357
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 1 cut(s) 100
HspAI GCGC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 6 cut(s) 122, 184, 214, 302, 330, 353
MaeII ACGT 2 cut(s) 237, 357
MaeIII GTNAC 1 cut(s) 353
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 2 cut(s) 269, 350
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 2 cut(s) 114, 177
MmeI TCCRAC 1 cut(s) 305
MnlI CCTC 2 cut(s) 122, 334
Mph1103I ATGCAT 1 cut(s) 28
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 95, 289
Mva1269I GAATGC 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 289
PctI GAATGC 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 220
RseI CAYNNNNRTG 2 cut(s) 95, 289
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 1 cut(s) 331
SduI GDGCHC 1 cut(s) 220
SetI ASST 8 cut(s) 67, 85, 220, 240, 279, 325, 360, 372
SmiMI CAYNNNNRTG 2 cut(s) 95, 289
Sse9I AATT 2 cut(s) 114, 177
SstI GAGCTC 1 cut(s) 220
TaaI ACNGT 3 cut(s) 70, 94, 184
TaiI ACGT 2 cut(s) 240, 360
TaqI TCGA 2 cut(s) 127, 214
TasI AATT 2 cut(s) 114, 177
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 134, 374
TspRI CASTG 1 cut(s) 296
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
ZraI GACGTC 1 cut(s) 238
Zsp2I ATGCAT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.