Rh5CG322800

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0010047
Physical Location & Seq
Forward (+)
35711629 .. 35714665
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG322800.1

Sequence Viewer

Length: 312 bp
ATGATATTTGTTAAAATTGTTGCATGTTGTAATGTTCCCGAGTGCCTTTCAGGATATATCAAGGATTTTGAAGTTTTTGAGCCGCATAGAGTGGGGAAAATTACAGTTCAACTACAGGGCAGGGTTAATGATTGTCGAGCTCTTACTTACAGGCAAGACGTCAAGGCAAGAGATATTGAAGAGTATAAAAAGCGCAAGCTTCCAACGCGCCAGTGGGGTTATGTTGTGATTACAACTCCTGAAGGTGTAATGGATCATGAAGAGGCTATTACTCGTAACGTGGGGGGTCAGGTTCTTGGCTATTTTCATTAG

Protein Analysis

103

Amino Acids

11.9

Weight (kDa)

8.38

Isoelectric Point (pI)

40.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S8 PF00410 17 - 101 6.9e-12 Ribosomal protein S8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccII CGCG 1 cut(s) 208
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 159
AgsI TTSAA 3 cut(s) 71, 110, 179
AluBI AGCT 2 cut(s) 140, 199
AluI AGCT 2 cut(s) 140, 199
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 1 cut(s) 261
Ama87I CYCGRG 1 cut(s) 38
AspLEI GCGC 2 cut(s) 195, 210
AvaI CYCGRG 1 cut(s) 38
BanII GRGCYC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 142
BfmI CTRYAG 1 cut(s) 113
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmeT110I CYCGRG 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 211
Bsh1236I CGCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 38
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 1 cut(s) 253
BspACI CCGC 1 cut(s) 83
BspFNI CGCG 1 cut(s) 208
BspHI TCATGA 1 cut(s) 256
BspPI GGATC 1 cut(s) 261
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 253
BssNI GRCGYC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 2 cut(s) 174, 255
BstACI GRCGYC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 197
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 195, 210
BstKTI GATC 1 cut(s) 256
BstMBI GATC 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 27
BstSFI CTRYAG 1 cut(s) 113
BstUI CGCG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 197
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 195, 210
CviAII CATG 2 cut(s) 24, 257
CviJI RGCY 5 cut(s) 82, 140, 199, 266, 300
CviKI_1 RGCY 5 cut(s) 82, 140, 199, 266, 300
DpnI GATC 1 cut(s) 255
DpnII GATC 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 174, 255
EarI CTCTTC 2 cut(s) 174, 255
Ecl136II GAGCTC 1 cut(s) 140
Eco24I GRGCYC 1 cut(s) 142
Eco53kI GAGCTC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 140
EcoT38I GRGCYC 1 cut(s) 142
FaeI CATG 2 cut(s) 27, 260
FaiI YATR 6 cut(s) 25, 57, 87, 186, 222, 258
FatI CATG 2 cut(s) 23, 256
Fnu4HI GCNGC 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 83
GlaI GCGC 2 cut(s) 194, 209
GluI GCNGC 1 cut(s) 83
HhaI GCGC 2 cut(s) 195, 210
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 2 cut(s) 27, 260
Hin6I GCGC 2 cut(s) 193, 208
HinP1I GCGC 2 cut(s) 193, 208
HindIII AAGCTT 1 cut(s) 197
Hpy188III TCNNGA 4 cut(s) 38, 51, 239, 257
HpyAV CCTTC 1 cut(s) 236
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 2 cut(s) 159, 279
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 2 cut(s) 159, 279
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 2 cut(s) 27, 260
HspAI GCGC 2 cut(s) 193, 208
Kzo9I GATC 1 cut(s) 253
LpnPI CCDG 7 cut(s) 36, 101, 106, 136, 224, 252, 275
MaeII ACGT 2 cut(s) 159, 279
MaeIII GTNAC 1 cut(s) 275
MalI GATC 1 cut(s) 255
MboI GATC 1 cut(s) 253
MboII GAAGA 2 cut(s) 191, 272
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 15, 99
MmeI TCCRAC 1 cut(s) 227
MnlI CCTC 1 cut(s) 256
MseI TTAA 2 cut(s) 12, 126
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 1 cut(s) 253
NlaIII CATG 2 cut(s) 27, 260
NspI RCATGY 1 cut(s) 27
PagI TCATGA 1 cut(s) 256
PkrI GCNGC 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 142
SaqAI TTAA 2 cut(s) 12, 126
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 1 cut(s) 253
SduI GDGCHC 1 cut(s) 142
SetI ASST 6 cut(s) 142, 162, 201, 247, 282, 294
SfcI CTRYAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 15, 99
SsiI CCGC 1 cut(s) 83
SstI GAGCTC 1 cut(s) 142
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 2 cut(s) 162, 282
TaqI TCGA 1 cut(s) 136
TasI AATT 2 cut(s) 15, 99
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 12, 126
Tru9I TTAA 2 cut(s) 12, 126
TscAI CASTG 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 273, 296
TspRI CASTG 1 cut(s) 218
XceI RCATGY 1 cut(s) 27
XcmI CCANNNNNNNNNTGG 1 cut(s) 210
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.