Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010047

Physical Location & Seq

Genomic Coordinates Reverse (-)

19783294 .. 19785587

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0199800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGTCAAAGAGTCAAGCAAGAGTTAAAGATAGGATTAGTGCATTACCTGACGAAATTCTTTGTAAAATACTTTCTTGCCTTGAACTACAATGTGCTGTGAGGACCACCGTTTTGTCTCCGAGATGGAAGAATTTATGGACTTCTCTTCCCAACCTATGGTTCTGCAATGAAGATTTTAGTGATGATGATGCTTTTATGACGTTTGTGGATCGTGTTCTTTTCTTTCGTGACTCGTCAGACATCAAAAAATTCTATCTTGACCTCGAGGAACCAAAGGATGATTTCTCTCGTATTGAAAGTTGGATTTGTACCGCCATTAGGCGGAATGTTGTTGAACTTAATCTTTGTGTCAACTTATATCCGGACAAGACTTTTGAATTGCCTCGAAGCCTTTTCACTTGCAAAACACTAGAGGTGTTGTACCTGACGTCAAATTTTATTGCCAATCCTCCAAAATCTGGGTGTTTCCCGAATCTCAAGTTCCTCGATGTTCTGGTTCATTTTCCTAACCATAATAACTCGTCATTCGGACAGATTTTCTCTAATTGCCCTGTGCTTGAGGATTTGAGAATTTATGGGCCTCTTGGGGCGTATGATGAAGTTTTGGATTTCAACATCTCTGCACCTGAACTGAAGATATTAACAATAGGATTGTACATTGACGATTTTGAGGATGAAGAGTATAATTTTCATATTAATGCTCCAAAACTTGAAGTCTTGAACCTCCCTGAGGGTGATTCGTCAGTGTTTTCATTTGAGATCAGTGCAAAGTCCCTTGTCAAAGCCAATATCAATCTTTCTAGCTGTCGTGTACATTTTGACAGTACAAATGGACTTCTGGAAGCCATCTCCAATGTCAAACAGCTGTCTCTTTCAAATCATTATTTGGAGGGTGGTGTACCTGCTTTTGATAATCTGAACCATTTGGAACTGTCTCTTTGTGGTTTCACCTGCTGGAGATATCTAATAGAGTTTCTCAAGAGATCACGGAATCTAGAATATCTTGATATCAAACATCATTGCAAAGGTGAGCATGTGGACTTTACTCCTCCAGCGTTTGTGCCTGTTTGTATGTTGTCACATCTCAAGACTATCACAATAGCAAGCTTTGAGGGAAGGCAGGATGAAATGAGAGTTGCTCAGTATTTGCTAAAGTACAGTGAAGTTTTGAATAAGATGACTATTTTTACCATTTTAGGTCTTCCAAGAGCAGAAGAGGAGGCACTGTACAAAGAATTTTTGATGTTCGAACGGGGTTCAAAGACTTGTCAAGTTGAAATATATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

429

Amino Acids

49.42

Weight (kDa)

5.16

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	12 - 52	4.9e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	79 - 408	2.3e-12	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	99 - 242	2.3e-12	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	351 - 395	9.6e-14	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19720 AT4G29430
fragaria_vesca	FvH4_3g23910
malus_domestica	MD03G1189800.v1.1 MD11G1206100.v1.1
prunus_persica	Prupe.4G231400_v2.0.a1 Prupe.8G031000_v2.0.a1
pyrus_communis	pycom03g14270 pycom11g17890
rosa_chinensis	RchiOBHm_Chr5g0042421
rosa_laevigata	RLG00000034122
rosa_multiflora	Rmu_sc0002779.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038290
rosa_rugosa	Rorug05G0199800 Rorug05G0199900
rosa_samantha	Rh5AG286100 Rh5BG290800 Rh5CG322800 Rh5DG300500
rosa_wichuraiana	Rw5G026550 Rw5G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	959
AatII	GACGTC	1 cut(s)	431
AbsI	CCTCGAGG	1 cut(s)	263
Acc36I	ACCTGC	2 cut(s)	910, 959
AccB7I	CCANNNNNTGG	2 cut(s)	156, 458
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	2 cut(s)	312, 322
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	6 cut(s)	54, 130, 248, 433, 570, 1235
AcuI	CTGAAG	1 cut(s)	653
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	8 cut(s)	310, 422, 656, 813, 826, 900, 1157, 1229
AfiI	CCNNNNNNNGG	5 cut(s)	156, 318, 321, 458, 730
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	3 cut(s)	804, 865, 1107
AluI	AGCT	3 cut(s)	804, 865, 1107
Alw26I	GTCTC	3 cut(s)	120, 873, 939
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	263
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	1 cut(s)	578
ApoI	RAATTY	6 cut(s)	54, 130, 248, 433, 570, 1235
ArsI	GACNNNNNNTTYG	4 cut(s)	94, 126, 356, 388
AseI	ATTAAT	1 cut(s)	696
AspS9I	GGNCC	2 cut(s)	102, 578
AsuHPI	GGTGA	3 cut(s)	746, 940, 1040
AsuII	TTCGAA	1 cut(s)	1248
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	102
AxyI	CCTNAGG	1 cut(s)	729
BbsI	GAAGAC	1 cut(s)	1193
BccI	CCATC	2 cut(s)	117, 854
BcoDI	GTCTC	3 cut(s)	120, 873, 939
BfaI	CTAG	4 cut(s)	410, 801, 995, 1288
BfuAI	ACCTGC	2 cut(s)	910, 959
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	102, 578
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	1193
BplI	GAGNNNNNCTC	2 cut(s)	1123, 1155
BpmI	CTGGAG	2 cut(s)	976, 1035
Bpu14I	TTCGAA	1 cut(s)	1248
BpuEI	CTTGAG	4 cut(s)	461, 578, 962, 1070
BsaHI	GRCGYC	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	1211, 1241
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 318, 321, 458, 730
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	2 cut(s)	172, 1018
BseAI	TCCGGA	1 cut(s)	361
BseGI	GGATG	3 cut(s)	283, 679, 1129
BseLI	CCNNNNNNNGG	5 cut(s)	156, 318, 321, 458, 730
BseMI	GCAATG	2 cut(s)	172, 1018
BseMII	CTCAG	2 cut(s)	720, 1154
BseRI	GAGGAG	2 cut(s)	1038, 1232
BsgI	GTGCAG	1 cut(s)	606
BshFI	GGCC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	757
BslI	CCNNNNNNNGG	5 cut(s)	156, 318, 321, 458, 730
BsmAI	GTCTC	3 cut(s)	120, 873, 939
BsmFI	GGGAC	1 cut(s)	757
BsnI	GGCC	1 cut(s)	580
BsoBI	CYCGRG	1 cut(s)	263
Bsp119I	TTCGAA	1 cut(s)	1248
Bsp13I	TCCGGA	1 cut(s)	361
Bsp1407I	TGTACA	3 cut(s)	654, 811, 1227
Bsp143I	GATC	3 cut(s)	208, 759, 983
BspACI	CCGC	2 cut(s)	312, 322
BspANI	GGCC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	721, 1153
BspEI	TCCGGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	2 cut(s)	910, 959
BspPI	GGATC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	1248
BsrDI	GCAATG	2 cut(s)	172, 1018
BsrGI	TGTACA	3 cut(s)	654, 811, 1227
BssMI	GATC	3 cut(s)	208, 759, 983
BssNI	GRCGYC	1 cut(s)	428
Bst4CI	ACNGT	5 cut(s)	109, 824, 933, 1160, 1227
Bst6I	CTCTTC	3 cut(s)	150, 672, 1209
BstACI	GRCGYC	1 cut(s)	428
BstAUI	TGTACA	3 cut(s)	654, 811, 1227
BstBI	TTCGAA	1 cut(s)	1248
BstC8I	GCNNGC	1 cut(s)	1105
BstDEI	CTNAG	2 cut(s)	729, 1140
BstENI	CCTNNNNNAGG	1 cut(s)	728
BstF5I	GGATG	3 cut(s)	283, 679, 1129
BstKTI	GATC	3 cut(s)	211, 762, 986
BstMAI	GTCTC	3 cut(s)	120, 873, 939
BstMBI	GATC	3 cut(s)	208, 759, 983
BstNSI	RCATGY	1 cut(s)	1037
BstV2I	GAAGAC	1 cut(s)	1193
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	1 cut(s)	580
BtsCI	GGATG	3 cut(s)	283, 679, 1129
BtsIMutI	CAGTG	4 cut(s)	750, 769, 1165, 1223
BveI	ACCTGC	2 cut(s)	910, 959
Cac8I	GCNNGC	1 cut(s)	1105
Cfr13I	GGNCC	2 cut(s)	102, 578
Csp6I	GTAC	8 cut(s)	309, 421, 655, 812, 825, 899, 1156, 1228
CviAII	CATG	1 cut(s)	1034
CviJI	RGCY	7 cut(s)	390, 580, 785, 804, 845, 865, 1107
CviKI_1	RGCY	7 cut(s)	390, 580, 785, 804, 845, 865, 1107
CviQI	GTAC	8 cut(s)	309, 421, 655, 812, 825, 899, 1156, 1228
DdeI	CTNAG	2 cut(s)	729, 1140
DpnI	GATC	3 cut(s)	210, 761, 985
DpnII	GATC	3 cut(s)	208, 759, 983
Eam1104I	CTCTTC	3 cut(s)	150, 672, 1209
EarI	CTCTTC	3 cut(s)	150, 672, 1209
EciI	GGCGGA	1 cut(s)	337
Eco32I	GATATC	2 cut(s)	962, 1009
Eco47I	GGWCC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	653
Eco81I	CCTNAGG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	728
EcoRV	GATATC	2 cut(s)	962, 1009
FaeI	CATG	1 cut(s)	1037
FaqI	GGGAC	1 cut(s)	757
FatI	CATG	1 cut(s)	1033
FokI	GGATG	3 cut(s)	290, 686, 1136
FspBI	CTAG	4 cut(s)	410, 801, 995, 1288
GsuI	CTGGAG	2 cut(s)	976, 1035
HaeIII	GGCC	1 cut(s)	580
HapII	CCGG	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	1105
HinfI	GANTC	5 cut(s)	10, 230, 472, 737, 991
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	746, 940, 1040
Hpy166II	GTNNAC	4 cut(s)	352, 812, 899, 1039
Hpy188I	TCNGA	4 cut(s)	120, 238, 530, 918
Hpy8I	GTNNAC	4 cut(s)	352, 812, 899, 1039
HpyAV	CCTTC	1 cut(s)	1110
HpyCH4III	ACNGT	5 cut(s)	109, 824, 933, 1160, 1227
HpyCH4IV	ACGT	2 cut(s)	200, 428
HpyCH4V	TGCA	6 cut(s)	41, 165, 402, 623, 767, 1023
HpyF3I	CTNAG	2 cut(s)	729, 1140
HpySE526I	ACGT	2 cut(s)	200, 428
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	1 cut(s)	1037
Kpn2I	TCCGGA	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	208, 759, 983
LmnI	GCTCC	1 cut(s)	706
LweI	GCATC	1 cut(s)	178
MaeI	CTAG	4 cut(s)	410, 801, 995, 1288
MaeII	ACGT	2 cut(s)	200, 428
MaeIII	GTNAC	2 cut(s)	227, 1077
MalI	GATC	3 cut(s)	210, 761, 985
MboI	GATC	3 cut(s)	208, 759, 983
MboII	GAAGA	7 cut(s)	137, 139, 182, 646, 689, 1193, 1226
MluCI	AATT	9 cut(s)	54, 130, 248, 377, 433, 544, 570, 685, 1235
MlyI	GAGTC	2 cut(s)	19, 224
MmeI	TCCRAC	1 cut(s)	281
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	4 cut(s)	24, 339, 641, 696
MslI	CAYNNNNRTG	1 cut(s)	696
MspA1I	CMGCKG	1 cut(s)	865
MspI	CCGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	208, 759, 983
NlaIII	CATG	1 cut(s)	1037
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	227, 1077
NspI	RCATGY	1 cut(s)	1037
NspV	TTCGAA	1 cut(s)	1248
PaeR7I	CTCGAG	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	959
PfeI	GAWTC	3 cut(s)	472, 737, 991
PflMI	CCANNNNNTGG	2 cut(s)	156, 458
PleI	GAGTC	2 cut(s)	18, 224
PpsI	GAGTC	2 cut(s)	18, 224
PshBI	ATTAAT	1 cut(s)	696
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	102, 578
PspXI	VCTCGAGB	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	865
RsaI	GTAC	8 cut(s)	310, 422, 656, 813, 826, 900, 1157, 1229
RsaNI	GTAC	8 cut(s)	309, 421, 655, 812, 825, 899, 1156, 1228
RseI	CAYNNNNRTG	1 cut(s)	696
SaqAI	TTAA	4 cut(s)	24, 339, 641, 696
Sau3AI	GATC	3 cut(s)	208, 759, 983
Sau96I	GGNCC	2 cut(s)	102, 578
SchI	GAGTC	2 cut(s)	19, 224
SfaNI	GCATC	1 cut(s)	178
Sfr274I	CTCGAG	1 cut(s)	263
SfuI	TTCGAA	1 cut(s)	1248
SinI	GGWCC	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	696
SmlI	CTYRAG	5 cut(s)	263, 476, 557, 977, 1085
SmoI	CTYRAG	5 cut(s)	263, 476, 557, 977, 1085
Sse9I	AATT	9 cut(s)	54, 130, 248, 377, 433, 544, 570, 685, 1235
SsiI	CCGC	2 cut(s)	312, 322
SspMI	CTAG	4 cut(s)	410, 801, 995, 1288
TaaI	ACNGT	5 cut(s)	109, 824, 933, 1160, 1227
TaiI	ACGT	2 cut(s)	203, 431
TaqI	TCGA	4 cut(s)	264, 385, 486, 1248
TasI	AATT	9 cut(s)	54, 130, 248, 377, 433, 544, 570, 685, 1235
TatI	WGTACW	5 cut(s)	654, 811, 824, 1155, 1227
TfiI	GAWTC	3 cut(s)	472, 737, 991
Tru1I	TTAA	4 cut(s)	24, 339, 641, 696
Tru9I	TTAA	4 cut(s)	24, 339, 641, 696
TscAI	CASTG	4 cut(s)	750, 769, 1165, 1230
TseFI	GTSAC	2 cut(s)	227, 1077
Tsp45I	GTSAC	2 cut(s)	227, 1077
TspDTI	ATGAA	7 cut(s)	183, 488, 612, 680, 690, 741, 1140
TspGWI	ACGGA	1 cut(s)	1003
TspRI	CASTG	4 cut(s)	750, 769, 1165, 1230
Van91I	CCANNNNNTGG	2 cut(s)	156, 458
VpaK11BI	GGWCC	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	696
XagI	CCTNNNNNAGG	1 cut(s)	728
XapI	RAATTY	6 cut(s)	54, 130, 248, 433, 570, 1235
XbaI	TCTAGA	1 cut(s)	994
XceI	RCATGY	1 cut(s)	1037
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	4 cut(s)	410, 801, 995, 1288
ZraI	GACGTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.