Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010047

Physical Location & Seq

Genomic Coordinates Reverse (-)

26048703 .. 26051672

Gene Structure 2970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1189800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGGAGAATGATATTGAATAATGCATTGAGATCGATAGTGAATGCCGAGAGAAGGGGGAAAGATACGGTGGAGTTGAAACCTATATCCACAGTAATGTCATCATTCCTCAAAATCATGAAAGATCGAGGTTACATCAAGGATTTTCAGATCTTTGATCCACATAGAGTGGGGAGGATAACGGTTCAACTACAAGGCAGGGTTAACGATTGTAAAGCTCTTACTTACAGGCAGGATGTAAAGGCAAGAGATATTGAAGAGTACAAAAAGCAAACCCTTCCGACCAAACAGTGGGGTTATGTTGTGATTACTACTCCCGAAGGTGTGTTGGATCACGAAGAGGCTGTTAAGCGTAATGTTGGGGGTCAGGTTCTTGGCTATTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S8

Protein Analysis

130

Amino Acids

14.87

Weight (kDa)

9.67

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S8	PF00410	6 - 127	6.7e-21	Ribosomal protein S8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010047)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19720 AT4G29430
fragaria_vesca	FvH4_3g23910
malus_domestica	MD03G1189800.v1.1 MD11G1206100.v1.1
prunus_persica	Prupe.4G231400_v2.0.a1 Prupe.8G031000_v2.0.a1
pyrus_communis	pycom03g14270 pycom11g17890
rosa_chinensis	RchiOBHm_Chr5g0042421
rosa_laevigata	RLG00000034122
rosa_multiflora	Rmu_sc0002779.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038290
rosa_rugosa	Rorug05G0199800 Rorug05G0199900
rosa_samantha	Rh5AG286100 Rh5BG290800 Rh5CG322800 Rh5DG300500
rosa_wichuraiana	Rw5G026550 Rw5G034270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AclWI	GGATC	2 cut(s)	152, 339
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	2 cut(s)	54, 291
AgsI	TTSAA	4 cut(s)	19, 79, 188, 257
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
AlwI	GGATC	2 cut(s)	152, 339
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BglII	AGATCT	1 cut(s)	150
Bsa29I	ATCGAT	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 291
BseCI	ATCGAT	1 cut(s)	35
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	54, 291
BshVI	ATCGAT	1 cut(s)	35
BslI	CCNNNNNNNGG	2 cut(s)	54, 291
BsmI	GAATGC	1 cut(s)	49
Bsp143I	GATC	5 cut(s)	32, 124, 150, 157, 331
BspDI	ATCGAT	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	117
BspPI	GGATC	2 cut(s)	152, 339
BssMI	GATC	5 cut(s)	32, 124, 150, 157, 331
Bst4CI	ACNGT	4 cut(s)	70, 94, 184, 291
Bst6I	CTCTTC	2 cut(s)	252, 333
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	5 cut(s)	35, 127, 153, 160, 334
BstMBI	GATC	5 cut(s)	32, 124, 150, 157, 331
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	296
CciI	TCATGA	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	3 cut(s)	218, 344, 378
CviKI_1	RGCY	3 cut(s)	218, 344, 378
CviQI	GTAC	1 cut(s)	262
DpnI	GATC	5 cut(s)	34, 126, 152, 159, 333
DpnII	GATC	5 cut(s)	32, 124, 150, 157, 331
Eam1104I	CTCTTC	2 cut(s)	252, 333
EarI	CTCTTC	2 cut(s)	252, 333
EcoT22I	ATGCAT	1 cut(s)	28
FaeI	CATG	1 cut(s)	121
FaiI	YATR	4 cut(s)	86, 119, 165, 300
FatI	CATG	1 cut(s)	117
FokI	GGATG	1 cut(s)	248
Hin1II	CATG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HpaI	GTTAAC	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	150, 282
Hpy188III	TCNNGA	3 cut(s)	118, 317, 335
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	48, 287, 314
HpyCH4III	ACNGT	4 cut(s)	70, 94, 184, 291
HpyCH4V	TGCA	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	121
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	32, 124, 150, 157, 331
LpnPI	CCDG	4 cut(s)	184, 214, 218, 353
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	5 cut(s)	34, 126, 152, 159, 333
MboI	GATC	5 cut(s)	32, 124, 150, 157, 331
MboII	GAAGA	2 cut(s)	269, 350
MflI	RGATCY	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	305, 309
MnlI	CCTC	4 cut(s)	119, 122, 168, 334
Mph1103I	ATGCAT	1 cut(s)	28
MseI	TTAA	2 cut(s)	204, 348
MslI	CAYNNNNRTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	49
NdeII	GATC	5 cut(s)	32, 124, 150, 157, 331
NlaIII	CATG	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	28
PagI	TCATGA	1 cut(s)	117
PctI	GAATGC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	204, 348
Sau3AI	GATC	5 cut(s)	32, 124, 150, 157, 331
SetI	ASST	5 cut(s)	85, 133, 220, 325, 372
SmiMI	CAYNNNNRTG	1 cut(s)	95
TaaI	ACNGT	4 cut(s)	70, 94, 184, 291
TaqI	TCGA	2 cut(s)	35, 127
TatI	WGTACW	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	204, 348
Tru9I	TTAA	2 cut(s)	204, 348
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	134, 374
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.