AT2G19780

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012081
Physical Location & Seq
Reverse (-)
8522678 .. 8525238
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G19780.1

Sequence Viewer

Length: 1209 bp
ATGAAGAAGAAAGGCACCAACAACAACAACTTTAGCCTTCTGTCTTTGTCTCTGTTCCTGAATTGTTTGATTCTAACAAACGGATACAGCATTGGAGTCGGAGTTGGAATCGGCGGTGGAGACGGTGACGACGGCGGAGTTTGGATAGGTGGAGGAAACCCTAATTCCAATCCTGGCTCAGCTCCAAACCAACAACAGACAACAAATGCAGCTTACAATGCTCTTCAATCTTGGAAATCCGCCATTACAGAGGATCCATCTGGTGTTCTTAAAACATGGGTTGGTGAAGATGTTTGTTCTTACAGAGGCGTGTTCTGTTCTGGCTCATCTATAACCTCCATAGATCTAAACAAAGCAAATCTCAAAGGCACCATTGTTAAAGACCTCTCTTTACTCTCAGACCTAACCATTCTTCATCTCAACAGTAACAGATTCTCTGGTCAAATCCCAGATTCTTTCAAGAATCTTGATTCTCTTCAAGAACTCGATCTCAGCAACAACAGATTCTCCGGTTCTTTCCCTCAAGTCACACTCTACATCCCAAATCTGGTTTACCTCGATCTCCGGTTCAACAATTTCACTGGCTCTATACCGGAAAATCTCTTCAACAAACAATTAGACGCGATTCTCCTCAACAACAATCAATTCACCGGAGAAATCCCTGGGAATCTCGGTTACTCTACAGCTTCGGTGATTAATCTCGCTAACAACAAATTATCCGGCGAAATCCCGACGAGTTTCGGTATCACCGGTTCGAAATTGAAAGAGGTTTTGTTCTTGAATAACCAGTTAACCGGTTGTATACCGGAATCAGTTGGTTTATTCTCCGACATTGAAGTGTTTGATGTTAGTTTCAATTCATTGATGGGTCATGTCCCTGACACGATCTCTTGCTTATCGGAGATTGAAGTTTTGAATCTCGGACACAACAAATTCTCCGGTGATCTTCCTGATTTGGTCTGTACTTTGAGGAATCTGATAAATCTGACGGTTTCTTTCAACTTCTTCTCTGGGTTTAGCTCTCAGTGCTCGAGCCTTAGCGTTGGGTTTGATTTCACCGGAAATTGTATTCCCGGTAAGGGTTATCAACGGCCTCAGCCGGATTGTTCGGCGATTCCTGGTGGCCAATTGAGCTGTTTTAGAATTCCGGCGCAGCCGTTAACGTGTGCTGCGATTAGCTTGGGGTTGAAGGTGGCTTCATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

402

Amino Acids

42.84

Weight (kDa)

4.92

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 73 - 107 6.9e-08 Leucine rich repeat N-terminal domain
LRR_8 PF13855 135 - 193 6.1e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 14, 368
AccI GTMKAC 1 cut(s) 802
AccII CGCG 1 cut(s) 623
AciI CCGC 3 cut(s) 114, 135, 240
AclWI GGATC 2 cut(s) 248, 261
AcoI YGGCCR 1 cut(s) 1123
AcsI RAATTY 2 cut(s) 932, 1143
AfaI GTAC 1 cut(s) 964
AfiI CCNNNNNNNGG 2 cut(s) 547, 1079
AflIII ACRYGT 1 cut(s) 1163
AgeI ACCGGT 2 cut(s) 749, 794
AjnI CCWGG 3 cut(s) 172, 661, 1117
AluBI AGCT 6 cut(s) 182, 212, 686, 1020, 1134, 1179
AluI AGCT 6 cut(s) 182, 212, 686, 1020, 1134, 1179
Alw21I GWGCWC 1 cut(s) 1031
Alw26I GTCTC 2 cut(s) 54, 114
AlwI GGATC 2 cut(s) 248, 261
Ama87I CYCGRG 1 cut(s) 1030
AoxI GGCC 2 cut(s) 1091, 1123
ApeKI GCWGC 3 cut(s) 209, 1153, 1169
ApoI RAATTY 2 cut(s) 932, 1143
AseI ATTAAT 1 cut(s) 696
AsiGI ACCGGT 2 cut(s) 749, 794
AspLEI GCGC 1 cut(s) 1153
AsuC2I CCSGG 1 cut(s) 1074
AsuHPI GGTGA 7 cut(s) 137, 296, 640, 703, 739, 953, 1048
AsuII TTCGAA 1 cut(s) 755
AvaI CYCGRG 1 cut(s) 1030
BalI TGGCCA 1 cut(s) 1125
BamHI GGATCC 1 cut(s) 253
BanI GGYRCC 2 cut(s) 14, 368
Bbv12I GWGCWC 1 cut(s) 1031
BbvCI CCTCAGC 1 cut(s) 1095
BbvI GCAGC 3 cut(s) 221, 1156, 1165
BccI CCATC 2 cut(s) 265, 859
BceAI ACGGC 3 cut(s) 148, 1106, 1141
BcgI CGANNNNNNTGC 2 cut(s) 79, 113
BciT130I CCWGG 3 cut(s) 174, 663, 1119
BciVI GTATCC 1 cut(s) 77
BcnI CCSGG 1 cut(s) 1074
BcoDI GTCTC 2 cut(s) 54, 114
BfmI CTRYAG 1 cut(s) 681
BfuI GTATCC 1 cut(s) 77
BglII AGATCT 1 cut(s) 343
BisI GCNGC 3 cut(s) 210, 1154, 1170
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 3 cut(s) 211, 1155, 1171
Bme1390I CCNGG 4 cut(s) 174, 663, 1074, 1119
BmeT110I CYCGRG 1 cut(s) 1030
BmiI GGNNCC 3 cut(s) 16, 255, 370
BmrFI CCNGG 4 cut(s) 174, 663, 1074, 1119
Bpu10I CCTNAGC 2 cut(s) 1037, 1095
Bpu1102I GCTNAGC 1 cut(s) 178
Bpu14I TTCGAA 1 cut(s) 755
BpuEI CTTGAG 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 1074
BsaJI CCNNGG 2 cut(s) 661, 662
BsaWI WCCGGW 9 cut(s) 509, 564, 592, 650, 749, 794, 805, 938, 1058
BsaXI ACNNNNNCTCC 6 cut(s) 87, 117, 491, 521, 920, 950
Bsc4I CCNNNNNNNGG 2 cut(s) 547, 1079
Bse118I RCCGGY 2 cut(s) 749, 794
Bse1I ACTGG 2 cut(s) 586, 787
BseBI CCWGG 3 cut(s) 174, 663, 1119
BseDI CCNNGG 2 cut(s) 661, 662
BseGI GGATG 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 547, 1079
BseMII CTCAG 5 cut(s) 192, 411, 505, 1037, 1109
BseNI ACTGG 2 cut(s) 586, 787
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 3 cut(s) 221, 1156, 1165
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 2 cut(s) 1093, 1125
BshNI GGYRCC 2 cut(s) 14, 368
BshTI ACCGGT 2 cut(s) 749, 794
BsiHKAI GWGCWC 1 cut(s) 1031
BsiHKCI CYCGRG 1 cut(s) 1030
BslFI GGGAC 1 cut(s) 860
BslI CCNNNNNNNGG 2 cut(s) 547, 1079
BsmAI GTCTC 2 cut(s) 54, 114
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 860
BsnI GGCC 2 cut(s) 1093, 1125
BsoBI CYCGRG 1 cut(s) 1030
Bsp119I TTCGAA 1 cut(s) 755
Bsp1286I GDGCHC 1 cut(s) 1031
Bsp143I GATC 6 cut(s) 253, 343, 487, 559, 885, 943
Bsp1720I GCTNAGC 1 cut(s) 178
BspACI CCGC 3 cut(s) 114, 135, 240
BspANI GGCC 2 cut(s) 1093, 1125
BspCNI CTCAG 5 cut(s) 191, 410, 504, 1036, 1108
BspFNI CGCG 1 cut(s) 623
BspLI GGNNCC 3 cut(s) 16, 255, 370
BspPI GGATC 2 cut(s) 248, 261
BspQI GCTCTTC 1 cut(s) 228
BspT104I TTCGAA 1 cut(s) 755
BspT107I GGYRCC 2 cut(s) 14, 368
BsrFI RCCGGY 2 cut(s) 749, 794
BsrI ACTGG 2 cut(s) 586, 787
BssAI RCCGGY 2 cut(s) 749, 794
BssECI CCNNGG 2 cut(s) 661, 662
BssMI GATC 6 cut(s) 253, 343, 487, 559, 885, 943
BssNAI GTATAC 1 cut(s) 803
Bst1107I GTATAC 1 cut(s) 803
Bst2UI CCWGG 3 cut(s) 174, 663, 1119
Bst4CI ACNGT 3 cut(s) 125, 425, 991
Bst6I CTCTTC 3 cut(s) 228, 480, 608
BstBI TTCGAA 1 cut(s) 755
BstDEI CTNAG 6 cut(s) 178, 397, 491, 1023, 1037, 1095
BstF5I GGATG 1 cut(s) 537
BstFNI CGCG 1 cut(s) 623
BstHHI GCGC 1 cut(s) 1153
BstKTI GATC 6 cut(s) 256, 346, 490, 562, 888, 946
BstMAI GTCTC 2 cut(s) 54, 114
BstMBI GATC 6 cut(s) 253, 343, 487, 559, 885, 943
BstMWI GCNNNNNNNGC 3 cut(s) 218, 1026, 1131
BstNI CCWGG 3 cut(s) 174, 663, 1119
BstSCI CCNGG 4 cut(s) 172, 661, 1072, 1117
BstSFI CTRYAG 1 cut(s) 681
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 3 cut(s) 221, 1156, 1165
BstX2I RGATCY 2 cut(s) 253, 343
BstYI RGATCY 2 cut(s) 253, 343
BstZ17I GTATAC 1 cut(s) 803
BsuI GTATCC 1 cut(s) 77
BsuRI GGCC 2 cut(s) 1093, 1125
BtsCI GGATG 1 cut(s) 537
BtsIMutI CAGTG 2 cut(s) 579, 1031
CfoI GCGC 1 cut(s) 1153
Cfr10I RCCGGY 2 cut(s) 749, 794
CseI GACGC 1 cut(s) 629
Csp6I GTAC 1 cut(s) 963
CspAI ACCGGT 2 cut(s) 749, 794
CviAII CATG 3 cut(s) 276, 872, 1206
CviQI GTAC 1 cut(s) 963
DdeI CTNAG 6 cut(s) 178, 397, 491, 1023, 1037, 1095
DpnI GATC 6 cut(s) 255, 345, 489, 561, 887, 945
DpnII GATC 6 cut(s) 253, 343, 487, 559, 885, 943
EaeI YGGCCR 1 cut(s) 1123
Eam1104I CTCTTC 3 cut(s) 228, 480, 608
EarI CTCTTC 3 cut(s) 228, 480, 608
EciI GGCGGA 2 cut(s) 150, 229
Eco88I CYCGRG 1 cut(s) 1030
EcoRI GAATTC 1 cut(s) 1143
EcoRII CCWGG 3 cut(s) 172, 661, 1117
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 3 cut(s) 279, 875, 1209
FaiI YATR 7 cut(s) 277, 332, 341, 590, 803, 873, 1207
FaqI GGGAC 1 cut(s) 860
FatI CATG 3 cut(s) 275, 871, 1205
FblI GTMKAC 1 cut(s) 802
Fnu4HI GCNGC 3 cut(s) 210, 1154, 1170
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 3 cut(s) 210, 1154, 1170
GlaI GCGC 1 cut(s) 1152
GluI GCNGC 3 cut(s) 210, 1154, 1170
HaeIII GGCC 2 cut(s) 1093, 1125
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 1153
Hin1II CATG 3 cut(s) 279, 875, 1209
Hin6I GCGC 1 cut(s) 1151
HinP1I GCGC 1 cut(s) 1151
HincII GTYRAC 2 cut(s) 792, 1161
HindII GTYRAC 2 cut(s) 792, 1161
HpaI GTTAAC 2 cut(s) 792, 1161
HphI GGTGA 7 cut(s) 137, 296, 640, 703, 739, 953, 1048
Hpy166II GTNNAC 4 cut(s) 553, 792, 803, 1161
Hpy188I TCNGA 7 cut(s) 101, 400, 829, 901, 923, 978, 987
Hpy188III TCNNGA 7 cut(s) 58, 460, 467, 479, 730, 778, 950
Hpy8I GTNNAC 4 cut(s) 553, 792, 803, 1161
Hpy99I CGWCG 2 cut(s) 134, 736
HpyAV CCTTC 2 cut(s) 47, 1183
HpyCH4III ACNGT 3 cut(s) 125, 425, 991
HpyCH4IV ACGT 1 cut(s) 1163
HpyCH4V TGCA 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 1026, 1131
HpyF3I CTNAG 6 cut(s) 178, 397, 491, 1023, 1037, 1095
HpySE526I ACGT 1 cut(s) 1163
Hsp92II CATG 3 cut(s) 279, 875, 1209
HspAI GCGC 1 cut(s) 1151
KspAI GTTAAC 2 cut(s) 792, 1161
Kzo9I GATC 6 cut(s) 253, 343, 487, 559, 885, 943
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 3 cut(s) 221, 1156, 1165
MaeII ACGT 1 cut(s) 1163
MaeIII GTNAC 4 cut(s) 125, 425, 526, 674
MalI GATC 6 cut(s) 255, 345, 489, 561, 887, 945
MboI GATC 6 cut(s) 253, 343, 487, 559, 885, 943
MboII GAAGA 9 cut(s) 16, 19, 215, 299, 404, 467, 595, 938, 997
MfeI CAATTG 1 cut(s) 1127
MflI RGATCY 2 cut(s) 253, 343
MhlI GDGCHC 1 cut(s) 1031
MlsI TGGCCA 1 cut(s) 1125
MluNI TGGCCA 1 cut(s) 1125
MlyI GAGTC 1 cut(s) 105
MmeI TCCRAC 3 cut(s) 79, 85, 852
Mox20I TGGCCA 1 cut(s) 1125
MscI TGGCCA 1 cut(s) 1125
MseI TTAA 5 cut(s) 270, 378, 696, 791, 1160
MslI CAYNNNNRTG 2 cut(s) 836, 1204
Msp20I TGGCCA 1 cut(s) 1125
MspR9I CCNGG 4 cut(s) 174, 663, 1074, 1119
MunI CAATTG 1 cut(s) 1127
MvaI CCWGG 3 cut(s) 174, 663, 1119
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 218, 1026, 1131
NciI CCSGG 1 cut(s) 1074
NdeII GATC 6 cut(s) 253, 343, 487, 559, 885, 943
NlaIII CATG 3 cut(s) 279, 875, 1209
NlaIV GGNNCC 3 cut(s) 16, 255, 370
NmuCI GTSAC 2 cut(s) 125, 526
NspV TTCGAA 1 cut(s) 755
PaeR7I CTCGAG 1 cut(s) 1030
PasI CCCWGGG 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 1169
PinAI ACCGGT 2 cut(s) 749, 794
PkrI GCNGC 3 cut(s) 211, 1155, 1171
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshBI ATTAAT 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 172, 661, 1117
PspGI CCWGG 3 cut(s) 172, 661, 1117
PspN4I GGNNCC 3 cut(s) 16, 255, 370
PspXI VCTCGAGB 1 cut(s) 1030
PsrI GAACNNNNNNTAC 2 cut(s) 736, 768
PsuI RGATCY 2 cut(s) 253, 343
RsaI GTAC 1 cut(s) 964
RsaNI GTAC 1 cut(s) 963
RseI CAYNNNNRTG 2 cut(s) 836, 1204
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 5 cut(s) 270, 378, 696, 791, 1160
SatI GCNGC 3 cut(s) 210, 1154, 1170
Sau3AI GATC 6 cut(s) 253, 343, 487, 559, 885, 943
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 4 cut(s) 174, 663, 1074, 1119
SduI GDGCHC 1 cut(s) 1031
SfcI CTRYAG 1 cut(s) 681
Sfr274I CTCGAG 1 cut(s) 1030
SfuI TTCGAA 1 cut(s) 755
SlaI CTCGAG 1 cut(s) 1030
SmiMI CAYNNNNRTG 2 cut(s) 836, 1204
SmlI CTYRAG 2 cut(s) 522, 1030
SmoI CTYRAG 2 cut(s) 522, 1030
SsiI CCGC 3 cut(s) 114, 135, 240
StyD4I CCNGG 4 cut(s) 172, 661, 1072, 1117
TaaI ACNGT 3 cut(s) 125, 425, 991
TaiI ACGT 1 cut(s) 1166
TaqI TCGA 4 cut(s) 486, 558, 755, 1031
TatI WGTACW 1 cut(s) 962
Tru1I TTAA 5 cut(s) 270, 378, 696, 791, 1160
Tru9I TTAA 5 cut(s) 270, 378, 696, 791, 1160
TscAI CASTG 2 cut(s) 586, 1031
TseFI GTSAC 2 cut(s) 125, 526
TseI GCWGC 3 cut(s) 209, 1153, 1169
Tsp45I GTSAC 2 cut(s) 125, 526
TspDTI ATGAA 4 cut(s) 17, 404, 849, 1188
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 586, 1031
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 2 cut(s) 932, 1143
XhoI CTCGAG 1 cut(s) 1030
XmiI GTMKAC 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.