pycom15g17750

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012081
Physical Location & Seq
Reverse (-)
12587271 .. 12587936
666 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17750.1

Sequence Viewer

Length: 666 bp
ATGGAGAAATGGTGGTGGTTTCTTGCACTTCTCCTACTGATTGTTATCCCCACGGAAGCTGGGATTAATGTGGGCGGAGGAGTTGGTGTCAATGTCGGCCCTGTTGGCGGCGGCGGTGTCTGGATTGGTGGAGGAATCAATGGAAACGGGAATCCCCCAGTCCCGTCTGGGTCTTCTCCTTCAGGCCTCGAGAGAGCTTTCACCGCCCTCCAGGCGTGGAAATCCGCCATCTCCGACGACCCATCAAAGGTTCTAGACTCATGGGTCGGCCCGAATGTGTGTTCTTACAGAGGGGTTTTCTGCTCACCTGATTCTCAAGAAGTTGCAGGCATAGATCGATCTACCACGCCAATCTCAAGGGCAATCTCGTCCAAGAGCTCTCTTTACTCTCTCAACTCTCTCTCATCCACCTCAACAGCAACAGATTCTCCGGCCAAATCCCCGAAACTTTCCGAGACCTCACCGCCCTCCAAGAACTCGACCTCAGCAACAACGACTTCTCCGGCAGCTTCCCAACGGTCACATTACAAATTCCGAACCTCATCTACCTCGACCTCCGATACAACAGCTTCTCCGGCACCATCCCGGGCGAACTCTTCAACCAAAAACTCGACGCGATCTTCCTCAACAACAACAATTTCGAAGGCGAAATCCCCGAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

222

Amino Acids

22.68

Weight (kDa)

9.78

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 68 - 102 1.5e-07 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 577
AccII CGCG 1 cut(s) 616
AciI CCGC 7 cut(s) 75, 108, 111, 114, 204, 225, 464
AcoI YGGCCR 1 cut(s) 432
AcsI RAATTY 1 cut(s) 530
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 107, 247
AgsI TTSAA 1 cut(s) 600
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 5 cut(s) 59, 197, 378, 509, 569
AluI AGCT 5 cut(s) 59, 197, 378, 509, 569
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 1 cut(s) 449
Ama87I CYCGRG 3 cut(s) 188, 585, 655
AoxI GGCC 4 cut(s) 97, 184, 268, 432
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 530
AseI ATTAAT 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 98, 269
AsuC2I CCSGG 2 cut(s) 586, 587
AsuHPI GGTGA 3 cut(s) 193, 297, 453
AsuII TTCGAA 1 cut(s) 641
AvaI CYCGRG 3 cut(s) 188, 585, 655
BanI GGYRCC 1 cut(s) 577
BanII GRGCYC 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 380
BbvCI CCTCAGC 1 cut(s) 484
BbvI GCAGC 1 cut(s) 518
BccI CCATC 3 cut(s) 236, 250, 589
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 2 cut(s) 586, 587
BcoDI GTCTC 1 cut(s) 449
BfaI CTAG 1 cut(s) 254
BglI GCCNNNNNGGC 2 cut(s) 105, 212
BisI GCNGC 3 cut(s) 109, 112, 507
BlsI GCNGC 3 cut(s) 110, 113, 508
Bme1390I CCNGG 3 cut(s) 212, 586, 587
BmeT110I CYCGRG 3 cut(s) 188, 585, 655
BmgT120I GGNCC 2 cut(s) 98, 269
BmiI GGNNCC 1 cut(s) 579
BmrFI CCNGG 3 cut(s) 212, 586, 587
BmrI ACTGGG 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 1 cut(s) 194
Bpu10I CCTNAGC 1 cut(s) 484
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 2 cut(s) 300, 340
BpuMI CCSGG 2 cut(s) 586, 587
Bsa29I ATCGAT 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 51, 585
BsaXI ACNNNNNCTCC 9 cut(s) 26, 72, 102, 412, 442, 484, 514, 556, 586
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 247
Bse1I ACTGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 51, 585
BseGI GGATG 2 cut(s) 404, 581
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 107, 247
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 158
BseRI GAGGAG 1 cut(s) 93
BseXI GCAGC 1 cut(s) 518
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 4 cut(s) 99, 186, 270, 434
BshNI GGYRCC 1 cut(s) 577
BshVI ATCGAT 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 380
BsiHKCI CYCGRG 3 cut(s) 188, 585, 655
BsiSI CCGG 4 cut(s) 431, 503, 575, 586
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 107, 247
BsmAI GTCTC 1 cut(s) 449
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 4 cut(s) 99, 186, 270, 434
Bso31I GGTCTC 1 cut(s) 449
BsoBI CYCGRG 3 cut(s) 188, 585, 655
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 380
Bsp143I GATC 3 cut(s) 334, 338, 617
BspACI CCGC 7 cut(s) 75, 108, 111, 114, 204, 225, 464
BspANI GGCC 4 cut(s) 99, 186, 270, 434
BspCNI CTCAG 1 cut(s) 497
BspDI ATCGAT 1 cut(s) 337
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 1 cut(s) 579
BspT104I TTCGAA 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 577
BspTNI GGTCTC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 51, 585
BssMI GATC 3 cut(s) 334, 338, 617
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 519
Bst6I CTCTTC 1 cut(s) 601
BstBI TTCGAA 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 484
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 404, 581
BstFNI CGCG 1 cut(s) 616
BstKTI GATC 3 cut(s) 337, 341, 620
BstMAI GTCTC 1 cut(s) 449
BstMBI GATC 3 cut(s) 334, 338, 617
BstMWI GCNNNNNNNGC 4 cut(s) 105, 203, 212, 575
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 210, 584, 585
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 1 cut(s) 518
BstV2I GAAGAC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 337
BsuRI GGCC 4 cut(s) 99, 186, 270, 434
BsuTUI ATCGAT 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 51
BtsCI GGATG 2 cut(s) 404, 581
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 98, 269
Cfr9I CCCGGG 1 cut(s) 585
ClaI ATCGAT 1 cut(s) 337
CseI GACGC 1 cut(s) 622
CviAII CATG 1 cut(s) 261
CviJI RGCY 9 cut(s) 59, 99, 186, 197, 270, 378, 434, 509, 569
CviKI_1 RGCY 9 cut(s) 59, 99, 186, 197, 270, 378, 434, 509, 569
DdeI CTNAG 1 cut(s) 484
DpnI GATC 3 cut(s) 336, 340, 619
DpnII GATC 3 cut(s) 334, 338, 617
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 601
EarI CTCTTC 1 cut(s) 601
EciI GGCGGA 2 cut(s) 90, 214
Ecl136II GAGCTC 1 cut(s) 378
Eco147I AGGCCT 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 380
Eco31I GGTCTC 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 3 cut(s) 188, 585, 655
EcoICRI GAGCTC 1 cut(s) 378
EcoRII CCWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 380
FaeI CATG 1 cut(s) 264
FaiI YATR 2 cut(s) 262, 332
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 3 cut(s) 109, 112, 507
FokI GGATG 2 cut(s) 391, 568
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 3 cut(s) 109, 112, 507
FspBI CTAG 1 cut(s) 254
GluI GCNGC 3 cut(s) 109, 112, 507
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 4 cut(s) 99, 186, 270, 434
HapII CCGG 4 cut(s) 431, 503, 575, 586
HgaI GACGC 1 cut(s) 622
Hin1II CATG 1 cut(s) 264
HinfI GANTC 5 cut(s) 135, 151, 257, 311, 425
HpaII CCGG 4 cut(s) 431, 503, 575, 586
HphI GGTGA 3 cut(s) 193, 297, 453
Hpy188I TCNGA 4 cut(s) 235, 454, 536, 559
Hpy188III TCNNGA 4 cut(s) 121, 190, 254, 317
Hpy99I CGWCG 2 cut(s) 239, 616
HpyAV CCTTC 2 cut(s) 189, 637
HpyCH4III ACNGT 1 cut(s) 519
HpyCH4V TGCA 2 cut(s) 26, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 203, 212, 575
HpyF3I CTNAG 1 cut(s) 484
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 3 cut(s) 334, 338, 617
Lsp1109I GCAGC 1 cut(s) 518
MaeI CTAG 1 cut(s) 254
MaeIII GTNAC 1 cut(s) 519
MalI GATC 3 cut(s) 336, 340, 619
MboI GATC 3 cut(s) 334, 338, 617
MboII GAAGA 3 cut(s) 165, 588, 612
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 2 cut(s) 530, 636
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 258
MseI TTAA 1 cut(s) 66
MspI CCGG 4 cut(s) 431, 503, 575, 586
MspR9I CCNGG 3 cut(s) 212, 586, 587
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 4 cut(s) 105, 203, 212, 575
NciI CCSGG 2 cut(s) 586, 587
NdeII GATC 3 cut(s) 334, 338, 617
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 579
NmuCI GTSAC 1 cut(s) 519
NspV TTCGAA 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 188
PceI AGGCCT 1 cut(s) 186
PfeI GAWTC 4 cut(s) 135, 151, 311, 425
PkrI GCNGC 3 cut(s) 110, 113, 508
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 66
Psp124BI GAGCTC 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 579
PspPI GGNCC 2 cut(s) 98, 269
PsrI GAACNNNNNNTAC 2 cut(s) 529, 561
SacI GAGCTC 1 cut(s) 380
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 3 cut(s) 109, 112, 507
Sau3AI GATC 3 cut(s) 334, 338, 617
Sau96I GGNCC 2 cut(s) 98, 269
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 3 cut(s) 212, 586, 587
SduI GDGCHC 1 cut(s) 380
Sfr274I CTCGAG 1 cut(s) 188
SfuI TTCGAA 1 cut(s) 641
SlaI CTCGAG 1 cut(s) 188
SmaI CCCGGG 1 cut(s) 587
SmlI CTYRAG 3 cut(s) 188, 315, 355
SmoI CTYRAG 3 cut(s) 188, 315, 355
Sse9I AATT 2 cut(s) 530, 636
SseBI AGGCCT 1 cut(s) 186
SsiI CCGC 7 cut(s) 75, 108, 111, 114, 204, 225, 464
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 1 cut(s) 380
StuI AGGCCT 1 cut(s) 186
StyD4I CCNGG 3 cut(s) 210, 584, 585
TaaI ACNGT 1 cut(s) 519
TaqI TCGA 6 cut(s) 189, 337, 479, 551, 611, 641
TasI AATT 2 cut(s) 530, 636
TauI GCSGC 2 cut(s) 111, 114
TfiI GAWTC 4 cut(s) 135, 151, 311, 425
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 1 cut(s) 506
Tsp45I GTSAC 1 cut(s) 519
TspGWI ACGGA 1 cut(s) 68
TspMI CCCGGG 1 cut(s) 585
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 530
XbaI TCTAGA 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 188
XmaI CCCGGG 1 cut(s) 585
XspI CTAG 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.