MD15G1200000.v1.1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0012081
Physical Location & Seq
Reverse (-)
15899115 .. 15900486
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1200000.v1.1.491

Sequence Viewer

Length: 1326 bp
ATGTCACGCAGTGGTATCTCAAGGCAACAATACATTTTACCGTCGTTCAAGACCAAATATATTTGGACAACTTTACAAGTAAACCCAGCAAATAAGCACTATAGTGTTTTCTCCACTAAGAAAATGGAGAAATGGTGGTGGTTTCTTGCACTTCTCCTACTGATTGCCATCCCCACGGAAGCTGGGATTAATGTGGGCGGCGGAGTTGGTGTCAATGTCGGTCCTATTGGCGGCGGCGGTGTCTGGATTGGTGGAGGAATCAATAATGGAAACGGGAATCCCCCGGTCCCGTCTGGTTCTTCTCCTTCAGGCCTCGAGAGAGCTTTCACCGCCCTCCAGGCGTGGAAATCCGCCATCTCCGACGACCCATCGAAGATTCTAGACTCATGGGTCGGCCCGAATGTGTGTTCTTACAAAGGGGTTTTCTGCTCACCTGATTCTCAAGAAGTTACGGGCATAGATCTCAACCACGCCAATCTCAAGGGCAATCTCGTCCAAGAGCTCTCTTTACTCTCTCAACTCTCTCTCATCCACCTCAACAGCAACAGATTCTCCGGCCAAATCCCCGAAACTCTCCGAGACCTCACCGCCCTCCAAGAACTCGACCTCAGCAACAACGACTTCTCCGGCAGCTTCCCAACGGTCACATTACAAATTCCGAACCTCATCTACCTCGACCTCCGATACAACAGCTTCTCCGGCACCATCCCGGGCGAACTCTTCAACCAAAAACTCGACGCGATCTTCCTCAACAACAACAATTTCGAAGGCGAAATCCCCGAGAGTTTAGGAAACTCCCAAGCCTCCGTCATCAATTTCGCAAACAACCAGTTCACCGGAAACCTCCCGGCCAGCTTCGGCTTCATGGGGACGAAACTGAAAGAGATTTTGTTCCTCAACAACCAGTTAACCGGCTGCATTCCCGAAGGAGTCGGGATCTTCACAGACGTTAAGGTGTTCGATGCAAGCCATAATTCCCTGATGGGTCATCTTCCCGACACGATTTCTTGCCTGGAAGAAATCGAAGTTCTGAACTTGGCGCACAACGAGCTGTCGGGGGTGCTGCCGGACTTGGTGTGTTCGTTGAAAAGCCTGGAGAATCTGACCGTTGCTTACAATTTCTTTTCTGGGTTTAGTCAGGAATGTACGAAGTTGCCTGACCGGAATGTGTGGTTTGATTTCTCCCTGAATTGCATTCCCGGGCGGAACATGCAGCGGCCGCAGCCGGAATGCTCTCTGATTCCGGGCGGCGGGTTGAATTGCCTGAGAATTCCGGGGTCCAAGCCTCTGGTCTGTGGGTCCCGCTACCCATCGTCTTCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

442

Amino Acids

47.87

Weight (kDa)

5.33

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 110 - 144 7.7e-07 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 701
AccII CGCG 1 cut(s) 740
AclWI GGATC 1 cut(s) 944
AcoI YGGCCR 3 cut(s) 556, 849, 1217
AcsI RAATTY 2 cut(s) 654, 1269
AcuI CTGAAG 1 cut(s) 291
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 1 cut(s) 1147
AfiI CCNNNNNNNGG 2 cut(s) 230, 1250
AgsI TTSAA 4 cut(s) 49, 724, 1087, 1258
AjnI CCWGG 3 cut(s) 336, 1011, 1092
AleI CACNNNNGTG 1 cut(s) 102
AluBI AGCT 7 cut(s) 182, 323, 502, 633, 693, 855, 1051
AluI AGCT 7 cut(s) 182, 323, 502, 633, 693, 855, 1051
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 1 cut(s) 944
Ama87I CYCGRG 4 cut(s) 314, 709, 779, 1199
AoxI GGCC 5 cut(s) 310, 394, 556, 849, 1217
ApeKI GCWGC 5 cut(s) 630, 915, 1063, 1213, 1222
ApoI RAATTY 2 cut(s) 654, 1269
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 5 cut(s) 221, 286, 395, 1278, 1299
AsuC2I CCSGG 8 cut(s) 284, 710, 711, 848, 1200, 1201, 1245, 1275
AsuHPI GGTGA 4 cut(s) 319, 423, 577, 826
AsuII TTCGAA 1 cut(s) 765
AvaI CYCGRG 4 cut(s) 314, 709, 779, 1199
AvaII GGWCC 4 cut(s) 221, 286, 1278, 1299
BanI GGYRCC 1 cut(s) 701
BanII GRGCYC 1 cut(s) 504
BbsI GAAGAC 1 cut(s) 1308
Bbv12I GWGCWC 1 cut(s) 504
BbvCI CCTCAGC 1 cut(s) 608
BbvI GCAGC 5 cut(s) 642, 902, 1050, 1225, 1234
BccI CCATC 6 cut(s) 176, 362, 376, 713, 976, 1318
BciT130I CCWGG 3 cut(s) 338, 1013, 1094
BcnI CCSGG 8 cut(s) 284, 710, 711, 848, 1200, 1201, 1245, 1275
BcoDI GTCTC 1 cut(s) 573
BfaI CTAG 1 cut(s) 380
BfmI CTRYAG 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 338
BglII AGATCT 1 cut(s) 460
Bme18I GGWCC 4 cut(s) 221, 286, 1278, 1299
BmeT110I CYCGRG 4 cut(s) 314, 709, 779, 1199
BmgT120I GGNCC 5 cut(s) 221, 286, 395, 1278, 1299
BmiI GGNNCC 5 cut(s) 288, 703, 1279, 1300, 1301
BmsI GCATC 1 cut(s) 952
BpiI GAAGAC 1 cut(s) 1308
BpmI CTGGAG 2 cut(s) 320, 1115
Bpu10I CCTNAGC 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 765
BpuEI CTTGAG 3 cut(s) 4, 426, 464
BpuMI CCSGG 8 cut(s) 284, 710, 711, 848, 1200, 1201, 1245, 1275
BsaBI GATNNNNATC 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 573
BsaJI CCNNGG 5 cut(s) 174, 282, 709, 1199, 1274
BsaWI WCCGGW 2 cut(s) 836, 1161
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 1250
Bse118I RCCGGY 1 cut(s) 911
Bse1I ACTGG 2 cut(s) 829, 904
Bse8I GATNNNNATC 1 cut(s) 167
BseBI CCWGG 3 cut(s) 338, 1013, 1094
BseDI CCNNGG 5 cut(s) 174, 282, 709, 1199, 1274
BseGI GGATG 3 cut(s) 168, 528, 705
BseJI GATNNNNATC 1 cut(s) 167
BseLI CCNNNNNNNGG 2 cut(s) 230, 1250
BseMII CTCAG 2 cut(s) 622, 1256
BseNI ACTGG 2 cut(s) 829, 904
BseX3I CGGCCG 1 cut(s) 1217
BseXI GCAGC 5 cut(s) 642, 902, 1050, 1225, 1234
BseYI CCCAGC 2 cut(s) 85, 182
Bsh1236I CGCG 1 cut(s) 740
Bsh1285I CGRYCG 1 cut(s) 1220
BshFI GGCC 5 cut(s) 312, 396, 558, 851, 1219
BshNI GGYRCC 1 cut(s) 701
BsiEI CGRYCG 1 cut(s) 1220
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 4 cut(s) 314, 709, 779, 1199
BslFI GGGAC 3 cut(s) 272, 883, 1285
BslI CCNNNNNNNGG 2 cut(s) 230, 1250
BsmAI GTCTC 1 cut(s) 573
BsmFI GGGAC 3 cut(s) 272, 883, 1285
BsmI GAATGC 3 cut(s) 918, 1194, 1235
BsnI GGCC 5 cut(s) 312, 396, 558, 851, 1219
Bso31I GGTCTC 1 cut(s) 573
BsoBI CYCGRG 4 cut(s) 314, 709, 779, 1199
Bsp119I TTCGAA 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 3 cut(s) 460, 741, 936
BspANI GGCC 5 cut(s) 312, 396, 558, 851, 1219
BspCNI CTCAG 2 cut(s) 621, 1257
BspFNI CGCG 1 cut(s) 740
BspLI GGNNCC 5 cut(s) 288, 703, 1279, 1300, 1301
BspPI GGATC 1 cut(s) 944
BspT104I TTCGAA 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 911
BsrI ACTGG 2 cut(s) 829, 904
BssAI RCCGGY 1 cut(s) 911
BssECI CCNNGG 5 cut(s) 174, 282, 709, 1199, 1274
BssMI GATC 3 cut(s) 460, 741, 936
Bst2UI CCWGG 3 cut(s) 338, 1013, 1094
Bst4CI ACNGT 3 cut(s) 42, 643, 1108
Bst6I CTCTTC 1 cut(s) 725
BstBI TTCGAA 1 cut(s) 765
BstC8I GCNNGC 2 cut(s) 853, 967
BstDEI CTNAG 3 cut(s) 117, 608, 1265
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 3 cut(s) 168, 528, 705
BstFNI CGCG 1 cut(s) 740
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 3 cut(s) 463, 744, 939
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 3 cut(s) 460, 741, 936
BstMCI CGRYCG 1 cut(s) 1220
BstMWI GCNNNNNNNGC 7 cut(s) 329, 338, 699, 1048, 1210, 1219, 1222
BstNI CCWGG 3 cut(s) 338, 1013, 1094
BstNSI RCATGY 1 cut(s) 1213
BstSFI CTRYAG 1 cut(s) 100
BstUI CGCG 1 cut(s) 740
BstV1I GCAGC 5 cut(s) 642, 902, 1050, 1225, 1234
BstV2I GAAGAC 1 cut(s) 1308
BstX2I RGATCY 2 cut(s) 460, 936
BstXI CCANNNNNNTGG 1 cut(s) 1288
BstYI RGATCY 2 cut(s) 460, 936
BstZI CGGCCG 1 cut(s) 1217
BsuRI GGCC 5 cut(s) 312, 396, 558, 851, 1219
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 168, 528, 705
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 853, 967
CciNI GCGGCCGC 1 cut(s) 1217
CfoI GCGC 1 cut(s) 1042
Cfr10I RCCGGY 1 cut(s) 911
Cfr13I GGNCC 5 cut(s) 221, 286, 395, 1278, 1299
Cfr9I CCCGGG 2 cut(s) 709, 1199
CseI GACGC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 1146
CviAII CATG 3 cut(s) 387, 865, 1210
CviQI GTAC 1 cut(s) 1146
DdeI CTNAG 3 cut(s) 117, 608, 1265
DpnI GATC 3 cut(s) 462, 743, 938
DpnII GATC 3 cut(s) 460, 741, 936
DraIII CACNNNGTG 1 cut(s) 11
DrdI GACNNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 1 cut(s) 389
EaeI YGGCCR 3 cut(s) 556, 849, 1217
EagI CGGCCG 1 cut(s) 1217
Eam1104I CTCTTC 1 cut(s) 725
EarI CTCTTC 1 cut(s) 725
EciI GGCGGA 3 cut(s) 216, 340, 1219
Ecl136II GAGCTC 1 cut(s) 502
EclXI CGGCCG 1 cut(s) 1217
Eco147I AGGCCT 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 1 cut(s) 573
Eco47I GGWCC 4 cut(s) 221, 286, 1278, 1299
Eco52I CGGCCG 1 cut(s) 1217
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 1 cut(s) 291
Eco88I CYCGRG 4 cut(s) 314, 709, 779, 1199
EcoICRI GAGCTC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 1299
EcoRI GAATTC 1 cut(s) 1269
EcoRII CCWGG 3 cut(s) 336, 1011, 1092
EcoT38I GRGCYC 1 cut(s) 504
FaeI CATG 3 cut(s) 390, 868, 1213
FaiI YATR 8 cut(s) 60, 102, 388, 458, 866, 972, 1211, 1324
FaqI GGGAC 3 cut(s) 272, 883, 1285
FatI CATG 3 cut(s) 386, 864, 1209
FauI CCCGC 2 cut(s) 1244, 1310
FokI GGATG 3 cut(s) 155, 515, 692
FriOI GRGCYC 1 cut(s) 504
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 1041
GsaI CCCAGC 2 cut(s) 89, 186
GsuI CTGGAG 2 cut(s) 320, 1115
HaeIII GGCC 5 cut(s) 312, 396, 558, 851, 1219
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 1042
Hin1II CATG 3 cut(s) 390, 868, 1213
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HinfI GANTC 9 cut(s) 258, 277, 376, 383, 437, 549, 930, 1099, 1240
HpaI GTTAAC 1 cut(s) 909
HphI GGTGA 4 cut(s) 319, 423, 577, 826
Hpy166II GTNNAC 3 cut(s) 82, 834, 909
Hpy188I TCNGA 7 cut(s) 361, 578, 660, 683, 1032, 1104, 1239
Hpy188III TCNNGA 9 cut(s) 49, 244, 316, 380, 443, 923, 934, 995, 1139
Hpy8I GTNNAC 3 cut(s) 82, 834, 909
Hpy99I CGWCG 3 cut(s) 46, 365, 740
HpyAV CCTTC 3 cut(s) 315, 761, 920
HpyCH4III ACNGT 3 cut(s) 42, 643, 1108
HpyCH4IV ACGT 1 cut(s) 948
HpyCH4V TGCA 5 cut(s) 149, 918, 965, 1194, 1213
HpyF10VI GCNNNNNNNGC 7 cut(s) 329, 338, 699, 1048, 1210, 1219, 1222
HpyF3I CTNAG 3 cut(s) 117, 608, 1265
HpySE526I ACGT 1 cut(s) 948
Hsp92II CATG 3 cut(s) 390, 868, 1213
HspAI GCGC 1 cut(s) 1040
KflI GGGWCCC 1 cut(s) 1299
KspAI GTTAAC 1 cut(s) 909
Kzo9I GATC 3 cut(s) 460, 741, 936
Lsp1109I GCAGC 5 cut(s) 642, 902, 1050, 1225, 1234
LweI GCATC 1 cut(s) 952
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 948
MaeIII GTNAC 3 cut(s) 3, 448, 643
MalI GATC 3 cut(s) 462, 743, 938
MboI GATC 3 cut(s) 460, 741, 936
MboII GAAGA 8 cut(s) 291, 385, 712, 736, 931, 983, 1028, 1308
MflI RGATCY 2 cut(s) 460, 936
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 8 cut(s) 654, 760, 814, 973, 1117, 1189, 1258, 1269
MlyI GAGTC 2 cut(s) 377, 939
MmeI TCCRAC 1 cut(s) 384
MseI TTAA 3 cut(s) 189, 908, 951
MslI CAYNNNNRTG 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 1216
Mva1269I GAATGC 3 cut(s) 918, 1194, 1235
MvaI CCWGG 3 cut(s) 338, 1013, 1094
MvnI CGCG 1 cut(s) 740
MwoI GCNNNNNNNGC 7 cut(s) 329, 338, 699, 1048, 1210, 1219, 1222
NciI CCSGG 8 cut(s) 284, 710, 711, 848, 1200, 1201, 1245, 1275
NdeII GATC 3 cut(s) 460, 741, 936
NlaIII CATG 3 cut(s) 390, 868, 1213
NlaIV GGNNCC 5 cut(s) 288, 703, 1279, 1300, 1301
NmuCI GTSAC 2 cut(s) 3, 643
NotI GCGGCCGC 1 cut(s) 1217
NspI RCATGY 1 cut(s) 1213
NspV TTCGAA 1 cut(s) 765
OliI CACNNNNGTG 1 cut(s) 102
PaeR7I CTCGAG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 312
PctI GAATGC 3 cut(s) 918, 1194, 1235
PfeI GAWTC 7 cut(s) 258, 277, 376, 437, 549, 1099, 1240
PleI GAGTC 2 cut(s) 377, 938
PpsI GAGTC 2 cut(s) 377, 938
PpuMI RGGWCCY 1 cut(s) 1299
PshBI ATTAAT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 1299
Psp6I CCWGG 3 cut(s) 336, 1011, 1092
PspFI CCCAGC 2 cut(s) 85, 182
PspGI CCWGG 3 cut(s) 336, 1011, 1092
PspN4I GGNNCC 5 cut(s) 288, 703, 1279, 1300, 1301
PspPI GGNCC 5 cut(s) 221, 286, 395, 1278, 1299
PspPPI RGGWCCY 1 cut(s) 1299
PsrI GAACNNNNNNTAC 2 cut(s) 653, 685
PsuI RGATCY 2 cut(s) 460, 936
RsaI GTAC 1 cut(s) 1147
RsaNI GTAC 1 cut(s) 1146
RseI CAYNNNNRTG 1 cut(s) 102
SacI GAGCTC 1 cut(s) 504
SaqAI TTAA 3 cut(s) 189, 908, 951
Sau3AI GATC 3 cut(s) 460, 741, 936
Sau96I GGNCC 5 cut(s) 221, 286, 395, 1278, 1299
SchI GAGTC 2 cut(s) 377, 939
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 1 cut(s) 952
SfcI CTRYAG 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 765
SinI GGWCC 4 cut(s) 221, 286, 1278, 1299
SlaI CTCGAG 1 cut(s) 314
SmaI CCCGGG 2 cut(s) 711, 1201
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 4 cut(s) 19, 314, 441, 479
SmoI CTYRAG 4 cut(s) 19, 314, 441, 479
Sse9I AATT 8 cut(s) 654, 760, 814, 973, 1117, 1189, 1258, 1269
SseBI AGGCCT 1 cut(s) 312
SspMI CTAG 1 cut(s) 380
SstI GAGCTC 1 cut(s) 504
StuI AGGCCT 1 cut(s) 312
TaaI ACNGT 3 cut(s) 42, 643, 1108
TaiI ACGT 1 cut(s) 951
TaqI TCGA 8 cut(s) 315, 371, 603, 675, 735, 765, 960, 1023
TaqII GACCGA 1 cut(s) 209
TasI AATT 8 cut(s) 654, 760, 814, 973, 1117, 1189, 1258, 1269
TauI GCSGC 6 cut(s) 201, 234, 237, 1219, 1222, 1251
TfiI GAWTC 7 cut(s) 258, 277, 376, 437, 549, 1099, 1240
Tru1I TTAA 3 cut(s) 189, 908, 951
Tru9I TTAA 3 cut(s) 189, 908, 951
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 2 cut(s) 3, 643
TseI GCWGC 5 cut(s) 630, 915, 1063, 1213, 1222
Tsp45I GTSAC 2 cut(s) 3, 643
TspDTI ATGAA 1 cut(s) 853
TspGWI ACGGA 2 cut(s) 191, 796
TspMI CCCGGG 2 cut(s) 709, 1199
TspRI CASTG 1 cut(s) 16
VpaK11BI GGWCC 4 cut(s) 221, 286, 1278, 1299
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 2 cut(s) 654, 1269
XbaI TCTAGA 1 cut(s) 379
XceI RCATGY 1 cut(s) 1213
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XhoI CTCGAG 1 cut(s) 314
XmaI CCCGGG 2 cut(s) 709, 1199
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.