FvH4_1g06510

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0012081
Physical Location & Seq
Reverse (-)
3431340 .. 3432551
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g06510.t1

Sequence Viewer

Length: 1212 bp
ATGAAGTGCTGGCTTCTGGCTTTCCTGCTTCTGCTTATAATTCCCACAGAAGCTGGTTTTGGTGTTGGTGGTGGTGTTGGAGTCAATGTTGGCCCTGTTGGTGGTGGTGGTGGTGGCAGTGTTTGGATTGGTGGAGGCATCAATGGCCAAAATCCTCCATCTGGATCTTCCTCCTCAGACCTTAGCAAAGCCTACACTGCTCTCCAGGCATGGAAATCAGCAATCTCTGATGACCCAACTAAGGTCTTGGACACTTGGGTTGGACCAGATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAGATTCTGAGGATGGCCAAACCATTGTGGCTGGAATAGATCTCAATCATGCCAATCTCAAAGGCACTCTTGTCAAAGAGCTCTCCTTTCTAACTGAAATGTCCCTGATCCATCTCAACAGCAACAGATTTTCAGGCTCAATTCCTGACACTTTCAGAGACCTCAACTCTCTCCAAGAGCTTGACCTCAGTAACAACCAATTCTCAGGCCCCTTCCCCACAACCACATTATACATTCCCAACCTCATTTACCTTGACCTCAGATTCAACAGCTTCACTGGCTCAATTCCTGATGAGCTCTTCAACAAAAACCTTGATGCCATTTTTCTCAACAACAACCAATTTGAAGGTGAGCTACCCCAGAGTTTAGGGAATGCGCAAGCTTCTGTCATCAACTTAGCTAATAACAAGTTCAGTGGCAACTTCCCAAGTAACTTTGGTTTCATGGGCACCAAACTGAAGGAGATTTTGTTCCTCAATAATCAACTAACTGGTTGCATTCCTGAAGGAGTTGGGCTTTTTTCTGAGATCCAAGTCTTTGATGTGAGCTTCAATTCTCTGATGGGCCATTTGCCAGACACAATCTCTTGCCTCCAAGAAATTGAAGTACTCAACTTGGCACACAACAAGCTCTCTGGGGTTTTACCAGACCTGGTTTGCTCACTGAAAAGCCTAGTCAATCTTACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAGGAATGTGCCAAATTGTATTACAGGAATGTGGGGTTTGATTTCTCATTGAACTGCATTCCTGGGAGGAACATGCAGAGACCTCAGCCACAGTGTTCTTTGATTCCTGGAGGTGGGTTAAATTGTCTGCGAATTCCTGGGGCAAAGCCCCTTGTTTGTGGCGGAGTTCTTCCAAGCTCATCATCATCATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

404

Amino Acids

43.01

Weight (kDa)

4.87

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 66 - 99 3.9e-06 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 38
Acc16I TGCGCA 1 cut(s) 675
AccB1I GGYRCC 1 cut(s) 746
AciI CCGC 1 cut(s) 1176
AclWI GGATC 3 cut(s) 172, 400, 820
AcoI YGGCCR 2 cut(s) 145, 313
AcsI RAATTY 1 cut(s) 1146
AcuI CTGAAG 2 cut(s) 776, 822
AfaI GTAC 1 cut(s) 906
AfiI CCNNNNNNNGG 4 cut(s) 101, 161, 241, 1127
AgsI TTSAA 6 cut(s) 565, 601, 644, 850, 902, 1066
AjnI CCWGG 6 cut(s) 204, 948, 1014, 1075, 1120, 1150
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AloI GAACNNNNNNTCC 2 cut(s) 752, 784
Alw21I GWGCWC 2 cut(s) 381, 597
Alw26I GTCTC 2 cut(s) 450, 1087
AlwI GGATC 3 cut(s) 172, 400, 820
AlwNI CAGNNNCTG 2 cut(s) 53, 305
AoxI GGCC 5 cut(s) 91, 145, 313, 505, 862
ApoI RAATTY 1 cut(s) 1146
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 4 cut(s) 92, 263, 506, 862
AsuHPI GGTGA 1 cut(s) 659
AvaII GGWCC 1 cut(s) 263
BaeGI GKGCMC 1 cut(s) 749
BalI TGGCCA 2 cut(s) 147, 315
BanI GGYRCC 1 cut(s) 746
BanII GRGCYC 2 cut(s) 381, 597
BarI GAAGNNNNNNTAC 2 cut(s) 636, 668
BbsI GAAGAC 1 cut(s) 283
Bbv12I GWGCWC 2 cut(s) 381, 597
BbvCI CCTCAGC 1 cut(s) 1098
BccI CCATC 4 cut(s) 166, 305, 417, 853
BciT130I CCWGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
BcoDI GTCTC 2 cut(s) 450, 1087
BfaI CTAG 1 cut(s) 971
BglII AGATCT 1 cut(s) 337
BmcAI AGTACT 1 cut(s) 906
Bme1390I CCNGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
Bme18I GGWCC 1 cut(s) 263
BmgT120I GGNCC 4 cut(s) 92, 263, 506, 862
BmiI GGNNCC 2 cut(s) 508, 748
BmrFI CCNGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
BmsI GCATC 2 cut(s) 147, 604
BpiI GAAGAC 1 cut(s) 283
BpmI CTGGAG 2 cut(s) 188, 1143
Bpu10I CCTNAGC 2 cut(s) 182, 1098
BsaBI GATNNNNATC 1 cut(s) 342
BsaI GGTCTC 2 cut(s) 450, 1087
BsaJI CCNNGG 2 cut(s) 1076, 1151
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 752, 782
Bsc4I CCNNNNNNNGG 4 cut(s) 101, 161, 241, 1127
Bse1I ACTGG 2 cut(s) 580, 793
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
BseDI CCNNGG 2 cut(s) 1076, 1151
BseGI GGATG 1 cut(s) 316
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 4 cut(s) 101, 161, 241, 1127
BseMII CTCAG 7 cut(s) 189, 297, 499, 516, 571, 813, 1112
BseNI ACTGG 2 cut(s) 580, 793
BseRI GAGGAG 1 cut(s) 163
BseSI GKGCMC 1 cut(s) 749
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 5 cut(s) 93, 147, 315, 507, 864
BshNI GGYRCC 1 cut(s) 746
BsiHKAI GWGCWC 2 cut(s) 381, 597
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 4 cut(s) 101, 161, 241, 1127
BsmAI GTCTC 2 cut(s) 450, 1087
BsmFI GGGAC 1 cut(s) 385
BsmI GAATGC 3 cut(s) 676, 795, 1071
BsnI GGCC 5 cut(s) 93, 147, 315, 507, 864
Bso31I GGTCTC 2 cut(s) 450, 1087
Bsp1286I GDGCHC 3 cut(s) 381, 597, 749
Bsp143I GATC 4 cut(s) 164, 337, 405, 825
BspACI CCGC 1 cut(s) 1176
BspANI GGCC 5 cut(s) 93, 147, 315, 507, 864
BspCNI CTCAG 7 cut(s) 188, 298, 498, 515, 570, 814, 1111
BspLI GGNNCC 2 cut(s) 508, 748
BspPI GGATC 3 cut(s) 172, 400, 820
BspQI GCTCTTC 1 cut(s) 602
BspT107I GGYRCC 1 cut(s) 746
BspTNI GGTCTC 2 cut(s) 450, 1087
BsrI ACTGG 2 cut(s) 580, 793
BssECI CCNNGG 2 cut(s) 1076, 1151
BssMI GATC 4 cut(s) 164, 337, 405, 825
Bst2UI CCWGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
Bst4CI ACNGT 2 cut(s) 985, 1107
Bst6I CTCTTC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 11, 678
BstF5I GGATG 1 cut(s) 316
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 4 cut(s) 167, 340, 408, 828
BstMAI GTCTC 2 cut(s) 450, 1087
BstMBI GATC 4 cut(s) 164, 337, 405, 825
BstMWI GCNNNNNNNGC 4 cut(s) 144, 197, 206, 576
BstNI CCWGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
BstNSI RCATGY 1 cut(s) 1090
BstSCI CCNGG 6 cut(s) 204, 948, 1014, 1075, 1120, 1150
BstSLI GKGCMC 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 283
BstX2I RGATCY 3 cut(s) 164, 337, 825
BstYI RGATCY 3 cut(s) 164, 337, 825
BsuRI GGCC 5 cut(s) 93, 147, 315, 507, 864
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 2 cut(s) 124, 195
BtsIMutI CAGTG 6 cut(s) 124, 195, 573, 718, 959, 1112
Cac8I GCNNGC 2 cut(s) 11, 678
CaiI CAGNNNCTG 2 cut(s) 53, 305
CfoI GCGC 1 cut(s) 676
Cfr13I GGNCC 4 cut(s) 92, 263, 506, 862
CsiI ACCWGGT 1 cut(s) 948
Csp6I GTAC 1 cut(s) 905
CspCI CAANNNNNGTGG 2 cut(s) 694, 729
CviAII CATG 5 cut(s) 210, 347, 742, 1087, 1209
CviQI GTAC 1 cut(s) 905
DpnI GATC 4 cut(s) 166, 339, 407, 827
DpnII GATC 4 cut(s) 164, 337, 405, 825
EaeI YGGCCR 2 cut(s) 145, 313
Eam1104I CTCTTC 1 cut(s) 602
EarI CTCTTC 1 cut(s) 602
EciI GGCGGA 1 cut(s) 1191
Ecl136II GAGCTC 2 cut(s) 379, 595
Eco24I GRGCYC 2 cut(s) 381, 597
Eco31I GGTCTC 2 cut(s) 450, 1087
Eco47I GGWCC 1 cut(s) 263
Eco53kI GAGCTC 2 cut(s) 379, 595
Eco57I CTGAAG 2 cut(s) 776, 822
EcoICRI GAGCTC 2 cut(s) 379, 595
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 1146
EcoRII CCWGG 6 cut(s) 204, 948, 1014, 1075, 1120, 1150
EcoT38I GRGCYC 2 cut(s) 381, 597
FaeI CATG 5 cut(s) 213, 350, 745, 1090, 1212
FaiI YATR 7 cut(s) 38, 211, 348, 529, 743, 1088, 1210
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 385
FatI CATG 5 cut(s) 209, 346, 741, 1086, 1208
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 2 cut(s) 381, 597
FspBI CTAG 1 cut(s) 971
FspI TGCGCA 1 cut(s) 675
GlaI GCGC 1 cut(s) 675
GsuI CTGGAG 2 cut(s) 188, 1143
HaeIII GGCC 5 cut(s) 93, 147, 315, 507, 864
HhaI GCGC 1 cut(s) 676
Hin1II CATG 5 cut(s) 213, 350, 745, 1090, 1212
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 5 cut(s) 81, 288, 302, 561, 1117
HphI GGTGA 1 cut(s) 659
Hpy188I TCNGA 7 cut(s) 178, 229, 307, 455, 560, 823, 858
Hpy188III TCNNGA 4 cut(s) 162, 443, 587, 800
HpyAV CCTTC 4 cut(s) 520, 638, 751, 797
HpyCH4III ACNGT 2 cut(s) 985, 1107
HpyCH4V TGCA 4 cut(s) 299, 795, 1071, 1090
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 197, 206, 576
Hsp92II CATG 5 cut(s) 213, 350, 745, 1090, 1212
HspAI GCGC 1 cut(s) 674
Kzo9I GATC 4 cut(s) 164, 337, 405, 825
LguI GCTCTTC 1 cut(s) 602
LweI GCATC 2 cut(s) 147, 604
MabI ACCWGGT 1 cut(s) 948
MaeI CTAG 1 cut(s) 971
MaeIII GTNAC 2 cut(s) 488, 728
MalI GATC 4 cut(s) 166, 339, 407, 827
MboI GATC 4 cut(s) 164, 337, 405, 825
MboII GAAGA 4 cut(s) 159, 283, 589, 1175
MflI RGATCY 3 cut(s) 164, 337, 825
MhlI GDGCHC 3 cut(s) 381, 597, 749
MlsI TGGCCA 2 cut(s) 147, 315
MluNI TGGCCA 2 cut(s) 147, 315
MlyI GAGTC 2 cut(s) 90, 297
MmeI TCCRAC 2 cut(s) 58, 241
Mox20I TGGCCA 2 cut(s) 147, 315
MscI TGGCCA 2 cut(s) 147, 315
MseI TTAA 1 cut(s) 1133
MslI CAYNNNNRTG 1 cut(s) 1207
Msp20I TGGCCA 2 cut(s) 147, 315
MspR9I CCNGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
Mva1269I GAATGC 3 cut(s) 676, 795, 1071
MvaI CCWGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
MwoI GCNNNNNNNGC 4 cut(s) 144, 197, 206, 576
NdeII GATC 4 cut(s) 164, 337, 405, 825
NlaIII CATG 5 cut(s) 213, 350, 745, 1090, 1212
NlaIV GGNNCC 2 cut(s) 508, 748
NsbI TGCGCA 1 cut(s) 675
NspI RCATGY 1 cut(s) 1090
PciSI GCTCTTC 1 cut(s) 602
PctI GAATGC 3 cut(s) 676, 795, 1071
PfeI GAWTC 3 cut(s) 302, 561, 1117
PfoI TCCNGGA 1 cut(s) 1120
PleI GAGTC 2 cut(s) 89, 296
PpsI GAGTC 2 cut(s) 89, 296
PsiI TTATAA 1 cut(s) 38
Psp124BI GAGCTC 2 cut(s) 381, 597
Psp6I CCWGG 6 cut(s) 204, 948, 1014, 1075, 1120, 1150
PspGI CCWGG 6 cut(s) 204, 948, 1014, 1075, 1120, 1150
PspN4I GGNNCC 2 cut(s) 508, 748
PspPI GGNCC 4 cut(s) 92, 263, 506, 862
PstNI CAGNNNCTG 2 cut(s) 53, 305
PsuI RGATCY 3 cut(s) 164, 337, 825
RsaI GTAC 1 cut(s) 906
RsaNI GTAC 1 cut(s) 905
RseI CAYNNNNRTG 1 cut(s) 1207
SacI GAGCTC 2 cut(s) 381, 597
SapI GCTCTTC 1 cut(s) 602
SaqAI TTAA 1 cut(s) 1133
Sau3AI GATC 4 cut(s) 164, 337, 405, 825
Sau96I GGNCC 4 cut(s) 92, 263, 506, 862
ScaI AGTACT 1 cut(s) 906
SchI GAGTC 2 cut(s) 90, 297
ScrFI CCNGG 6 cut(s) 206, 950, 1016, 1077, 1122, 1152
SduI GDGCHC 3 cut(s) 381, 597, 749
SexAI ACCWGGT 1 cut(s) 948
SfaNI GCATC 2 cut(s) 147, 604
SinI GGWCC 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 1207
SsiI CCGC 1 cut(s) 1176
SspMI CTAG 1 cut(s) 971
SstI GAGCTC 2 cut(s) 381, 597
StyD4I CCNGG 6 cut(s) 204, 948, 1014, 1075, 1120, 1150
TaaI ACNGT 2 cut(s) 985, 1107
TatI WGTACW 1 cut(s) 904
TfiI GAWTC 3 cut(s) 302, 561, 1117
Tru1I TTAA 1 cut(s) 1133
Tru9I TTAA 1 cut(s) 1133
TscAI CASTG 6 cut(s) 124, 202, 580, 718, 966, 1112
TspDTI ATGAA 2 cut(s) 17, 730
TspRI CASTG 6 cut(s) 124, 202, 580, 718, 966, 1112
VpaK11BI GGWCC 1 cut(s) 263
XapI RAATTY 1 cut(s) 1146
XceI RCATGY 1 cut(s) 1090
XspI CTAG 1 cut(s) 971
ZrmI AGTACT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.