Prupe.7G217200_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0012081
Physical Location & Seq
Forward (+)
19604024 .. 19605688
1665 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G217200.1

Sequence Viewer

Length: 1209 bp
ATGGAGAAGTGGTGGCTTCTAGCTCTTCTCCTACTGAGTGTAATTCCTATAGAAGCTGGATTTGGAGTGGGTGGTGGTGTTGGTGTTAATGTTGGCCCTGTTGCTGGGGGTGGGGGAGCTGGAGTTTGGATTGGTGGAGGTATCAACGGAAATGGCCCAAATGCCCCACCTGGATCTTCAGCTTCAGGGCTTGACAGAGCTTACACTGCTCTGCAGGCATGGAAATCAGCCATCTCTGAAGACCCATCAAAAATTTTAGACACTTGGGTTGGCTCTGATGTGTGTTCTTACAAAGGGGTCTTTTGTGCAGATTCTCAATATGAAGTTTCTGCAGCCTCTGGCCCTGTTGTTGCTGGTATAGATCTCAACCATGCCAATCTCCAAGGCACTCTTGTCAAAGAACTCTCCTTTCTCACTGAAATGTCTCTCCTTCACCTCAACAGCAACAGATTTTCAGGCACAATTCCTGACACTTTCAAGGACCTCACCTCACTCCAAGAGCTGGACCTCAGCAACAACCATTTCTCAGGCTCTTTCCCTACAGTCACATTATACATTCCAAACCTCATTTACTTAGACCTCAGATTCAACAGCTTTTCTGGGCCCATTCCTGAAGATCTCTTCAATAGGAGACTAGATGCAATCTTTCTCAACAACAACCAATTTGCAGGTGGACTTCCTGAAAGTTTGGGGAACTCCCAAGCTTCTGTGATCAATTTAGCTAACAACAAATTCAGTGGGAACTTCCCAGCTAGTTTTGGCTTCATGAGCAATAAACTGAAGGAGATTTTGTTTCTCAACAACCAGTTAACAGGTTGCATTCCTGAGGGAGTTGGGCTCTTCACAGACATTCAAGTTTTTGATGTCAGCTTCAATTCACTGATGGGTCATCTGCCAGACACAATCTCCTGTCTGCAAGACATTGAAGTTCTGAACTTGGGACACAACAAGCTATCTGGGGTTCTTCCAGAAATGGTGTGTTCTTTGAAAAGCCTTTTGAATTTGACTGTTGCTTACAATTTCTTTTCTGGGTTCAGCCAGGAATGTGCCAAATTGTTCTACAGAAATGTGGGGTTTGATTTTTCATTGAATTGCATTCCTGGGAGGAACATGCAGAGACCTCAACCAGAGTGCTCCTTAATTCCAGGAGGTGGGTTGAATTGTCTGAGAATCCCTGGTTCAAAGCCTCTTGTTTGCGGGTCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

403

Amino Acids

42.87

Weight (kDa)

4.96

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 659
AccB7I CCANNNNNTGG 2 cut(s) 502, 1151
AciI CCGC 1 cut(s) 1197
AclWI GGATC 1 cut(s) 181
AcsI RAATTY 3 cut(s) 252, 731, 1000
AcuI CTGAAG 5 cut(s) 162, 168, 258, 633, 800
AfiI CCNNNNNNNGG 3 cut(s) 104, 502, 1151
AjnI CCWGG 5 cut(s) 169, 1038, 1099, 1144, 1174
AjuI GAANNNNNNNTTGG 2 cut(s) 45, 77
Alw21I GWGCWC 1 cut(s) 1136
Alw26I GTCTC 3 cut(s) 429, 625, 1111
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 338
AoxI GGCC 4 cut(s) 94, 154, 340, 602
ApaI GGGCCC 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 332
ApoI RAATTY 3 cut(s) 252, 731, 1000
AspS9I GGNCC 7 cut(s) 95, 155, 341, 481, 505, 602, 603
AsuHPI GGTGA 2 cut(s) 425, 478
AvaII GGWCC 2 cut(s) 481, 505
AxyI CCTNAGG 1 cut(s) 825
BaeGI GKGCMC 1 cut(s) 606
BanII GRGCYC 2 cut(s) 606, 840
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 1136
BbvCI CCTCAGC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 344
BccI CCATC 3 cut(s) 239, 253, 877
BciT130I CCWGG 5 cut(s) 171, 1040, 1101, 1146, 1176
BclI TGATCA 1 cut(s) 711
BcoDI GTCTC 3 cut(s) 429, 625, 1111
BfaI CTAG 3 cut(s) 20, 635, 753
BfmI CTRYAG 5 cut(s) 48, 212, 330, 540, 1060
BfuAI ACCTGC 1 cut(s) 659
BglII AGATCT 2 cut(s) 361, 616
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 5 cut(s) 171, 1040, 1101, 1146, 1176
Bme18I GGWCC 2 cut(s) 481, 505
BmgT120I GGNCC 7 cut(s) 95, 155, 341, 481, 505, 602, 603
BmiI GGNNCC 1 cut(s) 604
BmrFI CCNGG 5 cut(s) 171, 1040, 1101, 1146, 1176
BmsI GCATC 1 cut(s) 628
BpiI GAAGAC 1 cut(s) 246
BplI GAGNNNNNCTC 2 cut(s) 822, 854
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 1111
BsaJI CCNNGG 3 cut(s) 382, 1100, 1174
BsaXI ACNNNNNCTCC 7 cut(s) 26, 108, 138, 776, 806, 890, 920
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 502, 1151
Bse1I ACTGG 1 cut(s) 805
Bse21I CCTNAGG 1 cut(s) 825
BseBI CCWGG 5 cut(s) 171, 1040, 1101, 1146, 1176
BseDI CCNNGG 3 cut(s) 382, 1100, 1174
BseLI CCNNNNNNNGG 3 cut(s) 104, 502, 1151
BseMII CTCAG 6 cut(s) 26, 523, 540, 595, 816, 1157
BseNI ACTGG 1 cut(s) 805
BseSI GKGCMC 1 cut(s) 606
BseXI GCAGC 1 cut(s) 344
BseYI CCCAGC 2 cut(s) 104, 748
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 4 cut(s) 96, 156, 342, 604
BsiHKAI GWGCWC 1 cut(s) 1136
BslFI GGGAC 1 cut(s) 954
BslI CCNNNNNNNGG 3 cut(s) 104, 502, 1151
BsmAI GTCTC 3 cut(s) 429, 625, 1111
BsmFI GGGAC 1 cut(s) 954
BsmI GAATGC 2 cut(s) 819, 1095
BsnI GGCC 4 cut(s) 96, 156, 342, 604
Bso31I GGTCTC 1 cut(s) 1111
Bsp120I GGGCCC 1 cut(s) 602
Bsp1286I GDGCHC 3 cut(s) 606, 840, 1136
Bsp143I GATC 4 cut(s) 173, 361, 616, 711
BspACI CCGC 1 cut(s) 1197
BspANI GGCC 4 cut(s) 96, 156, 342, 604
BspCNI CTCAG 6 cut(s) 27, 522, 539, 594, 817, 1158
BspHI TCATGA 1 cut(s) 765
BspLI GGNNCC 1 cut(s) 604
BspMAI CTGCAG 2 cut(s) 216, 334
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 2 cut(s) 30, 845
BspTNI GGTCTC 1 cut(s) 1111
BsrI ACTGG 1 cut(s) 805
BssECI CCNNGG 3 cut(s) 382, 1100, 1174
BssMI GATC 4 cut(s) 173, 361, 616, 711
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 5 cut(s) 171, 1040, 1101, 1146, 1176
Bst4CI ACNGT 2 cut(s) 544, 1009
Bst6I CTCTTC 3 cut(s) 30, 626, 845
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 7 cut(s) 35, 509, 526, 574, 581, 825, 1166
BstKTI GATC 4 cut(s) 176, 364, 619, 714
BstMAI GTCTC 3 cut(s) 429, 625, 1111
BstMBI GATC 4 cut(s) 173, 361, 616, 711
BstMWI GCNNNNNNNGC 3 cut(s) 206, 215, 768
BstNI CCWGG 5 cut(s) 171, 1040, 1101, 1146, 1176
BstNSI RCATGY 1 cut(s) 1114
BstSCI CCNGG 5 cut(s) 169, 1038, 1099, 1144, 1174
BstSFI CTRYAG 5 cut(s) 48, 212, 330, 540, 1060
BstSLI GKGCMC 1 cut(s) 606
BstV1I GCAGC 1 cut(s) 344
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 3 cut(s) 173, 361, 616
BstYI RGATCY 3 cut(s) 173, 361, 616
Bsu36I CCTNAGG 1 cut(s) 825
BsuRI GGCC 4 cut(s) 96, 156, 342, 604
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 4 cut(s) 204, 414, 742, 878
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 765
Cfr13I GGNCC 7 cut(s) 95, 155, 341, 481, 505, 602, 603
CspCI CAANNNNNGTGG 2 cut(s) 718, 753
CviAII CATG 4 cut(s) 219, 371, 766, 1111
DdeI CTNAG 7 cut(s) 35, 509, 526, 574, 581, 825, 1166
DpnI GATC 4 cut(s) 175, 363, 618, 713
DpnII GATC 4 cut(s) 173, 361, 616, 711
Eam1104I CTCTTC 3 cut(s) 30, 626, 845
EarI CTCTTC 3 cut(s) 30, 626, 845
Eco130I CCWWGG 1 cut(s) 382
Eco24I GRGCYC 2 cut(s) 606, 840
Eco31I GGTCTC 1 cut(s) 1111
Eco47I GGWCC 2 cut(s) 481, 505
Eco57I CTGAAG 5 cut(s) 162, 168, 258, 633, 800
Eco81I CCTNAGG 1 cut(s) 825
EcoO109I RGGNCCY 1 cut(s) 481
EcoRII CCWGG 5 cut(s) 169, 1038, 1099, 1144, 1174
EcoT14I CCWWGG 1 cut(s) 382
EcoT38I GRGCYC 2 cut(s) 606, 840
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 4 cut(s) 222, 374, 769, 1114
FaiI YATR 8 cut(s) 50, 220, 321, 359, 372, 553, 767, 1112
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FaqI GGGAC 1 cut(s) 954
FatI CATG 4 cut(s) 218, 370, 765, 1110
FauI CCCGC 1 cut(s) 1190
FbaI TGATCA 1 cut(s) 711
Fnu4HI GCNGC 1 cut(s) 333
FriOI GRGCYC 2 cut(s) 606, 840
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 3 cut(s) 20, 635, 753
GluI GCNGC 1 cut(s) 333
GsaI CCCAGC 2 cut(s) 108, 752
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 4 cut(s) 96, 156, 342, 604
Hin1II CATG 4 cut(s) 222, 374, 769, 1114
HincII GTYRAC 1 cut(s) 810
HindII GTYRAC 1 cut(s) 810
HindIII AAGCTT 1 cut(s) 702
HinfI GANTC 3 cut(s) 311, 585, 1170
HpaI GTTAAC 1 cut(s) 810
HphI GGTGA 2 cut(s) 425, 478
Hpy166II GTNNAC 2 cut(s) 674, 810
Hpy188I TCNGA 5 cut(s) 238, 277, 584, 933, 1167
Hpy188III TCNNGA 6 cut(s) 467, 611, 680, 766, 824, 968
Hpy8I GTNNAC 2 cut(s) 674, 810
HpyAV CCTTC 2 cut(s) 440, 775
HpyCH4III ACNGT 2 cut(s) 544, 1009
HpyCH4V TGCA 9 cut(s) 214, 308, 332, 641, 668, 819, 916, 1095, 1114
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 215, 768
HpyF3I CTNAG 7 cut(s) 35, 509, 526, 574, 581, 825, 1166
Hsp92II CATG 4 cut(s) 222, 374, 769, 1114
Ksp22I TGATCA 1 cut(s) 711
KspAI GTTAAC 1 cut(s) 810
Kzo9I GATC 4 cut(s) 173, 361, 616, 711
LguI GCTCTTC 2 cut(s) 30, 845
LmnI GCTCC 2 cut(s) 116, 1139
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 1 cut(s) 628
MaeI CTAG 3 cut(s) 20, 635, 753
MaeIII GTNAC 1 cut(s) 544
MalI GATC 4 cut(s) 175, 363, 618, 713
MboI GATC 4 cut(s) 173, 361, 616, 711
MboII GAAGA 7 cut(s) 17, 168, 251, 613, 626, 832, 956
MflI RGATCY 3 cut(s) 173, 361, 616
MhlI GDGCHC 3 cut(s) 606, 840, 1136
MseI TTAA 3 cut(s) 87, 809, 1139
MslI CAYNNNNRTG 1 cut(s) 419
MspR9I CCNGG 5 cut(s) 171, 1040, 1101, 1146, 1176
Mva1269I GAATGC 2 cut(s) 819, 1095
MvaI CCWGG 5 cut(s) 171, 1040, 1101, 1146, 1176
MwoI GCNNNNNNNGC 3 cut(s) 206, 215, 768
NdeII GATC 4 cut(s) 173, 361, 616, 711
NlaIII CATG 4 cut(s) 222, 374, 769, 1114
NlaIV GGNNCC 1 cut(s) 604
NmuCI GTSAC 1 cut(s) 544
NspI RCATGY 1 cut(s) 1114
PagI TCATGA 1 cut(s) 765
PaqCI CACCTGC 1 cut(s) 659
PciSI GCTCTTC 2 cut(s) 30, 845
PctI GAATGC 2 cut(s) 819, 1095
PfeI GAWTC 3 cut(s) 311, 585, 1170
PflMI CCANNNNNTGG 2 cut(s) 502, 1151
PfoI TCCNGGA 1 cut(s) 1144
PkrI GCNGC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 5 cut(s) 169, 1038, 1099, 1144, 1174
PspFI CCCAGC 2 cut(s) 104, 748
PspGI CCWGG 5 cut(s) 169, 1038, 1099, 1144, 1174
PspN4I GGNNCC 1 cut(s) 604
PspOMI GGGCCC 1 cut(s) 602
PspPI GGNCC 7 cut(s) 95, 155, 341, 481, 505, 602, 603
PspPPI RGGWCCY 1 cut(s) 481
PstI CTGCAG 2 cut(s) 216, 334
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 3 cut(s) 173, 361, 616
RseI CAYNNNNRTG 1 cut(s) 419
SapI GCTCTTC 2 cut(s) 30, 845
SaqAI TTAA 3 cut(s) 87, 809, 1139
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 4 cut(s) 173, 361, 616, 711
Sau96I GGNCC 7 cut(s) 95, 155, 341, 481, 505, 602, 603
ScrFI CCNGG 5 cut(s) 171, 1040, 1101, 1146, 1176
SduI GDGCHC 3 cut(s) 606, 840, 1136
SfaNI GCATC 1 cut(s) 628
SfcI CTRYAG 5 cut(s) 48, 212, 330, 540, 1060
SinI GGWCC 2 cut(s) 481, 505
SmiMI CAYNNNNRTG 1 cut(s) 419
SsiI CCGC 1 cut(s) 1197
SspMI CTAG 3 cut(s) 20, 635, 753
StyD4I CCNGG 5 cut(s) 169, 1038, 1099, 1144, 1174
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 544, 1009
TfiI GAWTC 3 cut(s) 311, 585, 1170
Tru1I TTAA 3 cut(s) 87, 809, 1139
Tru9I TTAA 3 cut(s) 87, 809, 1139
TscAI CASTG 4 cut(s) 211, 421, 742, 885
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 336, 754, 1074
TspGWI ACGGA 1 cut(s) 162
TspRI CASTG 4 cut(s) 211, 421, 742, 885
Van91I CCANNNNNTGG 2 cut(s) 502, 1151
VpaK11BI GGWCC 2 cut(s) 481, 505
XapI RAATTY 3 cut(s) 252, 731, 1000
XceI RCATGY 1 cut(s) 1114
XcmI CCANNNNNNNNNTGG 1 cut(s) 668
XspI CTAG 3 cut(s) 20, 635, 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.