Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030540.1

Orthogroup ID

OG0012081

Physical Location & Seq

Genomic Coordinates Reverse (-)

1147 .. 2361

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030540.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgaagtgctggcttctggcttttatgcttctacatataatccccacagaagctggatttggtgttggtggtggtgttggagtcaatgttggccctgttggcgttggtggtggtggcagtgtttggattggtggaggcatcaatggccaaaatcccccatctgggtcttcctcctcagaccttggcagagcgtacactgctctccaagcttggaaatcagcaatctctgatgacccaaccaaggttttggacacttgggttggcccagatgtgtgttcttacaaaggagtcttctgtgcagattctgaggatggccaaactattgtggctggaatagatctcaaccatgccaatctcaaaggcattcttgtcaaagagctctcctttctgactgaaatgtccctgatccatctcaacagcaacagattttcaggcacaattcctgacactttcacagacctcaactctctccaagagcttgacctcagtaacaaccaattctcaggccccttccccaccaccacattatacattcccaacctcatttaccttgacctcagattcaacaacttcactggttcaattcctgatgagctcttcaacaaaaacctagatgcaatttttctcaacaacaaccaattcgaaggtgagctgcctcagagtttggggagtgcacaagcttctgtcatcaatttagctaataacaagttcagtggcaacttcccaagtaactttgggttcattggcaccaaattgaaggagattttgttcctcaataatcaactaactggttgcatccctgagggagttggccttttctctgagatccaagtctttgatgtgagcttcaactctctgatgggccatttgccagacacaatctcttgcctccaagaaattgaagtactaaacttggcacacaacaagctctctggggttttgccagaccttgtttgctctctgaaaagcctggtcaatctgactgttgcttataatttcttttctgggttcagccaggaatgtgccaaattgtattacaggaatgtggggtttgatttctcattgaattgcattcctgggaagaacatgcagagacctcagcctcagtgttctttgattcctggaggtggtttaaattgtctgagaattcctggtgcaaagcctcttgtttgtggctcagtcctaccaagctcatcatcatcatcatctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

404

Amino Acids

43.14

Weight (kDa)

4.86

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19780 AT4G29240 AT4G29240
fragaria_vesca	FvH4_1g06510
malus_domestica	MD15G1200000.v1.1
prunus_persica	Prupe.7G217200_v2.0.a1
pyrus_communis	pycom02g05420 pycom15g17750
rosa_chinensis	RchiOBHm_Chr2g0092261
rosa_laevigata	RLG00000016291
rosa_multiflora	Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii	Rroxscaffold_2G00149320
rosa_rugosa	Rorug02G0024100
rosa_samantha	Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana	Rw2G006220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	993
AasI	GACNNNNNNGTC	1 cut(s)	397
AccB1I	GGYRCC	1 cut(s)	746
AclWI	GGATC	2 cut(s)	400, 820
AcoI	YGGCCR	2 cut(s)	145, 313
AcsI	RAATTY	1 cut(s)	1146
AfaI	GTAC	2 cut(s)	194, 906
AfiI	CCNNNNNNNGG	4 cut(s)	161, 162, 241, 1127
AgsI	TTSAA	7 cut(s)	565, 582, 601, 757, 850, 902, 1066
AjnI	CCWGG	5 cut(s)	969, 1014, 1075, 1120, 1150
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AloI	GAACNNNNNNTCC	2 cut(s)	752, 784
Alw21I	GWGCWC	3 cut(s)	381, 597, 676
Alw26I	GTCTC	1 cut(s)	1087
Alw44I	GTGCAC	1 cut(s)	672
AlwI	GGATC	2 cut(s)	400, 820
AlwNI	CAGNNNCTG	2 cut(s)	53, 305
AoxI	GGCC	7 cut(s)	91, 145, 262, 313, 505, 811, 862
ApaLI	GTGCAC	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	652
ApoI	RAATTY	1 cut(s)	1146
AspS9I	GGNCC	4 cut(s)	92, 263, 506, 862
AsuHPI	GGTGA	1 cut(s)	659
AsuII	TTCGAA	1 cut(s)	642
AxyI	CCTNAGG	1 cut(s)	801
BaeGI	GKGCMC	1 cut(s)	676
BalI	TGGCCA	2 cut(s)	147, 315
BanI	GGYRCC	1 cut(s)	746
BanII	GRGCYC	2 cut(s)	381, 597
BbsI	GAAGAC	2 cut(s)	159, 283
Bbv12I	GWGCWC	3 cut(s)	381, 597, 676
BbvCI	CCTCAGC	1 cut(s)	1098
BbvI	GCAGC	1 cut(s)	639
BccI	CCATC	4 cut(s)	166, 305, 417, 853
BciT130I	CCWGG	5 cut(s)	971, 1016, 1077, 1122, 1152
BcoDI	GTCTC	1 cut(s)	1087
BfaI	CTAG	1 cut(s)	611
BglI	GCCNNNNNGGC	1 cut(s)	99
BglII	AGATCT	1 cut(s)	337
BisI	GCNGC	1 cut(s)	653
BlsI	GCNGC	1 cut(s)	654
BmcAI	AGTACT	1 cut(s)	906
Bme1390I	CCNGG	5 cut(s)	971, 1016, 1077, 1122, 1152
BmgT120I	GGNCC	4 cut(s)	92, 263, 506, 862
BmiI	GGNNCC	2 cut(s)	508, 748
BmrFI	CCNGG	5 cut(s)	971, 1016, 1077, 1122, 1152
BmsI	GCATC	3 cut(s)	147, 604, 804
BpiI	GAAGAC	2 cut(s)	159, 283
BpmI	CTGGAG	1 cut(s)	1143
Bpu10I	CCTNAGC	1 cut(s)	1098
Bpu14I	TTCGAA	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	1087
BsaJI	CCNNGG	3 cut(s)	181, 240, 1076
BsaXI	ACNNNNNCTCC	4 cut(s)	72, 102, 752, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	161, 162, 241, 1127
Bse1I	ACTGG	2 cut(s)	580, 793
Bse21I	CCTNAGG	1 cut(s)	801
BseBI	CCWGG	5 cut(s)	971, 1016, 1077, 1122, 1152
BseDI	CCNNGG	3 cut(s)	181, 240, 1076
BseGI	GGATG	2 cut(s)	316, 795
BseLI	CCNNNNNNNGG	4 cut(s)	161, 162, 241, 1127
BseNI	ACTGG	2 cut(s)	580, 793
BseRI	GAGGAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	1 cut(s)	639
BsgI	GTGCAG	1 cut(s)	318
BshFI	GGCC	7 cut(s)	93, 147, 264, 315, 507, 813, 864
BshNI	GGYRCC	1 cut(s)	746
BsiHKAI	GWGCWC	3 cut(s)	381, 597, 676
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	4 cut(s)	161, 162, 241, 1127
BsmAI	GTCTC	1 cut(s)	1087
BsmFI	GGGAC	1 cut(s)	385
BsmI	GAATGC	2 cut(s)	363, 1071
BsnI	GGCC	7 cut(s)	93, 147, 264, 315, 507, 813, 864
Bso31I	GGTCTC	1 cut(s)	1087
Bsp119I	TTCGAA	1 cut(s)	642
Bsp1286I	GDGCHC	3 cut(s)	381, 597, 676
Bsp143I	GATC	3 cut(s)	337, 405, 825
BspANI	GGCC	7 cut(s)	93, 147, 264, 315, 507, 813, 864
BspLI	GGNNCC	2 cut(s)	508, 748
BspPI	GGATC	2 cut(s)	400, 820
BspQI	GCTCTTC	1 cut(s)	602
BspT104I	TTCGAA	1 cut(s)	642
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	1087
BsrI	ACTGG	2 cut(s)	580, 793
BssECI	CCNNGG	3 cut(s)	181, 240, 1076
BssMI	GATC	3 cut(s)	337, 405, 825
BssT1I	CCWWGG	2 cut(s)	181, 240
Bst2UI	CCWGG	5 cut(s)	971, 1016, 1077, 1122, 1152
Bst4CI	ACNGT	1 cut(s)	985
Bst6I	CTCTTC	1 cut(s)	602
BstBI	TTCGAA	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	316, 795
BstKTI	GATC	3 cut(s)	340, 408, 828
BstMAI	GTCTC	1 cut(s)	1087
BstMBI	GATC	3 cut(s)	337, 405, 825
BstMWI	GCNNNNNNNGC	4 cut(s)	99, 144, 197, 206
BstNI	CCWGG	5 cut(s)	971, 1016, 1077, 1122, 1152
BstNSI	RCATGY	1 cut(s)	1090
BstSCI	CCNGG	5 cut(s)	969, 1014, 1075, 1120, 1150
BstSLI	GKGCMC	1 cut(s)	676
BstV1I	GCAGC	1 cut(s)	639
BstV2I	GAAGAC	2 cut(s)	159, 283
BstX2I	RGATCY	2 cut(s)	337, 825
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	2 cut(s)	337, 825
Bsu36I	CCTNAGG	1 cut(s)	801
BsuRI	GGCC	7 cut(s)	93, 147, 264, 315, 507, 813, 864
BtsCI	GGATG	2 cut(s)	316, 795
BtsI	GCAGTG	2 cut(s)	124, 195
BtsIMutI	CAGTG	5 cut(s)	124, 195, 573, 718, 1112
Cac8I	GCNNGC	1 cut(s)	11
CaiI	CAGNNNCTG	2 cut(s)	53, 305
Cfr13I	GGNCC	4 cut(s)	92, 263, 506, 862
Csp6I	GTAC	2 cut(s)	193, 905
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	3 cut(s)	347, 1087, 1212
CviQI	GTAC	2 cut(s)	193, 905
DpnI	GATC	3 cut(s)	339, 407, 827
DpnII	GATC	3 cut(s)	337, 405, 825
DraI	TTTAAA	1 cut(s)	1134
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	145, 313
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Ecl136II	GAGCTC	2 cut(s)	379, 595
Eco130I	CCWWGG	2 cut(s)	181, 240
Eco24I	GRGCYC	2 cut(s)	381, 597
Eco31I	GGTCTC	1 cut(s)	1087
Eco53kI	GAGCTC	2 cut(s)	379, 595
Eco81I	CCTNAGG	1 cut(s)	801
EcoICRI	GAGCTC	2 cut(s)	379, 595
EcoO109I	RGGNCCY	1 cut(s)	506
EcoRI	GAATTC	1 cut(s)	1146
EcoRII	CCWGG	5 cut(s)	969, 1014, 1075, 1120, 1150
EcoT14I	CCWWGG	2 cut(s)	181, 240
EcoT38I	GRGCYC	2 cut(s)	381, 597
ErhI	CCWWGG	2 cut(s)	181, 240
FaeI	CATG	3 cut(s)	350, 1090, 1215
FaiI	YATR	8 cut(s)	26, 36, 38, 348, 529, 993, 1088, 1213
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	3 cut(s)	346, 1086, 1211
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	2 cut(s)	323, 782
FriOI	GRGCYC	2 cut(s)	381, 597
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	1 cut(s)	653
GsuI	CTGGAG	1 cut(s)	1143
HaeIII	GGCC	7 cut(s)	93, 147, 264, 315, 507, 813, 864
Hin1II	CATG	3 cut(s)	350, 1090, 1215
HindIII	AAGCTT	2 cut(s)	207, 678
HinfI	GANTC	5 cut(s)	81, 288, 302, 561, 1117
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	2 cut(s)	195, 674
Hpy188III	TCNNGA	2 cut(s)	443, 587
Hpy8I	GTNNAC	2 cut(s)	195, 674
HpyAV	CCTTC	3 cut(s)	520, 638, 751
HpyCH4III	ACNGT	1 cut(s)	985
HpyCH4V	TGCA	7 cut(s)	299, 617, 674, 795, 1071, 1090, 1157
HpyF10VI	GCNNNNNNNGC	4 cut(s)	99, 144, 197, 206
Hsp92II	CATG	3 cut(s)	350, 1090, 1215
Kzo9I	GATC	3 cut(s)	337, 405, 825
LguI	GCTCTTC	1 cut(s)	602
Lsp1109I	GCAGC	1 cut(s)	639
LweI	GCATC	3 cut(s)	147, 604, 804
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	2 cut(s)	488, 728
MalI	GATC	3 cut(s)	339, 407, 827
MboI	GATC	3 cut(s)	337, 405, 825
MboII	GAAGA	4 cut(s)	159, 283, 589, 1093
MflI	RGATCY	2 cut(s)	337, 825
MhlI	GDGCHC	3 cut(s)	381, 597, 676
MlsI	TGGCCA	2 cut(s)	147, 315
MluNI	TGGCCA	2 cut(s)	147, 315
MlyI	GAGTC	2 cut(s)	90, 297
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	2 cut(s)	147, 315
MscI	TGGCCA	2 cut(s)	147, 315
MseI	TTAA	1 cut(s)	1133
MslI	CAYNNNNRTG	1 cut(s)	1210
Msp20I	TGGCCA	2 cut(s)	147, 315
MspR9I	CCNGG	5 cut(s)	971, 1016, 1077, 1122, 1152
Mva1269I	GAATGC	2 cut(s)	363, 1071
MvaI	CCWGG	5 cut(s)	971, 1016, 1077, 1122, 1152
MwoI	GCNNNNNNNGC	4 cut(s)	99, 144, 197, 206
NdeII	GATC	3 cut(s)	337, 405, 825
NlaIII	CATG	3 cut(s)	350, 1090, 1215
NlaIV	GGNNCC	2 cut(s)	508, 748
NspI	RCATGY	1 cut(s)	1090
NspV	TTCGAA	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	602
PctI	GAATGC	2 cut(s)	363, 1071
PfeI	GAWTC	3 cut(s)	302, 561, 1117
PfoI	TCCNGGA	1 cut(s)	1120
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	2 cut(s)	89, 296
PpsI	GAGTC	2 cut(s)	89, 296
PsiI	TTATAA	1 cut(s)	993
Psp124BI	GAGCTC	2 cut(s)	381, 597
Psp6I	CCWGG	5 cut(s)	969, 1014, 1075, 1120, 1150
PspGI	CCWGG	5 cut(s)	969, 1014, 1075, 1120, 1150
PspN4I	GGNNCC	2 cut(s)	508, 748
PspPI	GGNCC	4 cut(s)	92, 263, 506, 862
PstNI	CAGNNNCTG	2 cut(s)	53, 305
PsuI	RGATCY	2 cut(s)	337, 825
RsaI	GTAC	2 cut(s)	194, 906
RsaNI	GTAC	2 cut(s)	193, 905
RseI	CAYNNNNRTG	1 cut(s)	1210
SacI	GAGCTC	2 cut(s)	381, 597
SapI	GCTCTTC	1 cut(s)	602
SaqAI	TTAA	1 cut(s)	1133
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	3 cut(s)	337, 405, 825
Sau96I	GGNCC	4 cut(s)	92, 263, 506, 862
ScaI	AGTACT	1 cut(s)	906
SchI	GAGTC	2 cut(s)	90, 297
ScrFI	CCNGG	5 cut(s)	971, 1016, 1077, 1122, 1152
SduI	GDGCHC	3 cut(s)	381, 597, 676
SfaNI	GCATC	3 cut(s)	147, 604, 804
SfuI	TTCGAA	1 cut(s)	642
SmiMI	CAYNNNNRTG	1 cut(s)	1210
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	2 cut(s)	381, 597
StyD4I	CCNGG	5 cut(s)	969, 1014, 1075, 1120, 1150
StyI	CCWWGG	2 cut(s)	181, 240
TaaI	ACNGT	1 cut(s)	985
TaqI	TCGA	1 cut(s)	642
TatI	WGTACW	1 cut(s)	904
TfiI	GAWTC	3 cut(s)	302, 561, 1117
Tru1I	TTAA	1 cut(s)	1133
Tru9I	TTAA	1 cut(s)	1133
TscAI	CASTG	5 cut(s)	124, 202, 580, 718, 1112
TseI	GCWGC	1 cut(s)	652
TspDTI	ATGAA	2 cut(s)	17, 730
TspRI	CASTG	5 cut(s)	124, 202, 580, 718, 1112
VneI	GTGCAC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	1146
XceI	RCATGY	1 cut(s)	1090
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	1 cut(s)	906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.