AT4G29240

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012081
Physical Location & Seq
Forward (+)
14418556 .. 14420350
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29240.2

Sequence Viewer

Length: 1248 bp
ATGTCTAAGAAGAAGAAAGGCAGCAACAACTTTAAGCTTCTCTGTTTCTTCCTGTTTTTGGGTGGTTTGGTTCAGACAGATGCTTCTTTTGGAGTAGGAGGCGGCGTTGGAGTAGGAATCGGCGGCGGCGGCGGTGGCGGTGGCGGTGGTGTTTGGGTTGGCGGTGGATACAACAACGGTGGAAATCGTAATGCTGTTCCAGGATCATCAGCTCCAAACAGGGTAGCTTACAATGCTCTTCAAGTTTGGAAATCAGCCATGAGAGAGGATCCATCAAATGTTCTCAAAACATGGGTTGGATCAGATGTTTGTTCTTACAAAGGTGTGTTCTGTTCTGGTCAATCTATAACCTCTATAGATCTTAACCATGCAAATCTCAAAGGCACACTTGTCAAAGACCTAGCTTTACTCTCAGACCTCAATATTCTCCATCTCAACAGTAACAGATTCTCAGGGCAAATCCCAGATTCTTTCAAATCTTTAGCTTCTCTTCAAGAACTTGATCTAAGCAACAATAAACTCTCAGGTCCTTTCCCTTTAGTCACACTCTACATACCAAATCTGGTTTACCTCGATCTCCGGTTTAATAGTTTAACCGGTTTCATCCCTGAAGAGCTTTTCAACAAACGGTTAGACGCGATTCTCCTCAATAACAATCAATTCGTCGGAGAAATCCCAAGAAACCTCGGAAATTCTCCGGCTTCGGTTATTAATCTCGCGAATAACAGATTTTCCGGCGAAATTCCGACGAGTTTTGGTCTGACGGGATCGAGGGTTAAGGAAGTTTTGCTTTTGAATAACCAGTTAACCGGTTGTATACCGGAATCTGTTGGTATGTTCTCTGAAATTGAAGTCTTTGACGTTAGCTACAATGCATTGATGGGTCATGTTCCAGATACGATCTCTTGCTTGTCGGCGATTGAAATTTTGAATCTTGCTCACAATAAATTCTCTGGGGAGGTTCCTGATTTGGTTTGTTCGTTGAGGAATCTTATTAATCTCACTGTTGCGTTCAATTTCTTCTCTGGGTTTAGCTCTGAATGTTCTTCCAGGGTTAGTTTCGGGTTTGATTTCGTTGGGAATTGTATTCCCGGGAGGAATTCGCAGCGGCCGCAGCCGGATTGTTCCGGTTATTCCGGCGGAGCTATGAGCTGTTTTAGGATTCCGACGCAGCCTTTGGCTTGTGCTGCGATAAGTGTTGGATTGAGAGAGAGTAATAATCAATACTACACTTCATCTCCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

415

Amino Acids

44.2

Weight (kDa)

7.48

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 78 - 112 4.2e-07 Leucine rich repeat N-terminal domain
LRR_8 PF13855 116 - 174 7e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 817
AccII CGCG 2 cut(s) 638, 719
AclWI GGATC 5 cut(s) 211, 263, 276, 307, 775
AcoI YGGCCR 1 cut(s) 1109
AcsI RAATTY 5 cut(s) 691, 741, 924, 947, 1099
AcuI CTGAAG 1 cut(s) 630
AfiI CCNNNNNNNGG 1 cut(s) 58
AgeI ACCGGT 2 cut(s) 596, 809
AgsI TTSAA 9 cut(s) 242, 475, 494, 622, 796, 851, 923, 931, 1015
AjnI CCWGG 2 cut(s) 199, 1049
AlwI GGATC 5 cut(s) 211, 263, 276, 307, 775
Ama87I CYCGRG 1 cut(s) 1091
AoxI GGCC 1 cut(s) 1109
ApeKI GCWGC 5 cut(s) 21, 1105, 1114, 1171, 1187
ApoI RAATTY 5 cut(s) 691, 741, 924, 947, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 1159, 1191
AseI ATTAAT 2 cut(s) 711, 996
AsiGI ACCGGT 2 cut(s) 596, 809
AspS9I GGNCC 1 cut(s) 527
AsuC2I CCSGG 2 cut(s) 1092, 1093
AvaI CYCGRG 1 cut(s) 1091
AvaII GGWCC 1 cut(s) 527
BamHI GGATCC 1 cut(s) 268
BbvI GCAGC 5 cut(s) 33, 1117, 1126, 1174, 1183
BccI CCATC 3 cut(s) 280, 438, 874
BciT130I CCWGG 2 cut(s) 201, 1051
BciVI GTATCC 1 cut(s) 161
BcnI CCSGG 2 cut(s) 1092, 1093
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 354
BfuI GTATCC 1 cut(s) 161
BglII AGATCT 1 cut(s) 358
Bme1390I CCNGG 4 cut(s) 201, 1051, 1092, 1093
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 1091
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 2 cut(s) 270, 963
BmrFI CCNGG 4 cut(s) 201, 1051, 1092, 1093
BmsI GCATC 1 cut(s) 70
BpuMI CCSGG 2 cut(s) 1092, 1093
BsaJI CCNNGG 3 cut(s) 685, 1050, 1091
BsaWI WCCGGW 5 cut(s) 579, 596, 809, 820, 1127
BsaXI ACNNNNNCTCC 3 cut(s) 90, 120, 1222
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 2 cut(s) 596, 809
Bse1I ACTGG 1 cut(s) 802
BseBI CCWGG 2 cut(s) 201, 1051
BseDI CCNNGG 3 cut(s) 685, 1050, 1091
BseGI GGATG 1 cut(s) 603
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 3 cut(s) 426, 465, 537
BseNI ACTGG 1 cut(s) 802
BseRI GAGGAG 2 cut(s) 635, 1230
BseX3I CGGCCG 1 cut(s) 1109
BseXI GCAGC 5 cut(s) 33, 1117, 1126, 1174, 1183
Bsh1236I CGCG 2 cut(s) 638, 719
Bsh1285I CGRYCG 1 cut(s) 1112
BshFI GGCC 1 cut(s) 1111
BshTI ACCGGT 2 cut(s) 596, 809
BsiEI CGRYCG 1 cut(s) 1112
BsiHKCI CYCGRG 1 cut(s) 1091
BslI CCNNNNNNNGG 1 cut(s) 58
BsnI GGCC 1 cut(s) 1111
BsoBI CYCGRG 1 cut(s) 1091
Bsp143I GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
Bsp68I TCGCGA 1 cut(s) 719
BspANI GGCC 1 cut(s) 1111
BspCNI CTCAG 3 cut(s) 425, 464, 536
BspFNI CGCG 2 cut(s) 638, 719
BspLI GGNNCC 2 cut(s) 270, 963
BspPI GGATC 5 cut(s) 211, 263, 276, 307, 775
BspQI GCTCTTC 2 cut(s) 243, 606
BsrFI RCCGGY 2 cut(s) 596, 809
BsrI ACTGG 1 cut(s) 802
BssAI RCCGGY 2 cut(s) 596, 809
BssECI CCNNGG 3 cut(s) 685, 1050, 1091
BssMI GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
BssNAI GTATAC 1 cut(s) 818
Bst1107I GTATAC 1 cut(s) 818
Bst2UI CCWGG 2 cut(s) 201, 1051
Bst4CI ACNGT 4 cut(s) 179, 440, 630, 1006
Bst6I CTCTTC 3 cut(s) 243, 495, 606
BstDEI CTNAG 5 cut(s) 6, 412, 451, 506, 523
BstF5I GGATG 1 cut(s) 603
BstFNI CGCG 2 cut(s) 638, 719
BstKTI GATC 8 cut(s) 206, 271, 302, 361, 505, 577, 770, 903
BstMBI GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
BstMCI CGRYCG 1 cut(s) 1112
BstMWI GCNNNNNNNGC 6 cut(s) 129, 135, 233, 1111, 1114, 1187
BstNI CCWGG 2 cut(s) 201, 1051
BstSCI CCNGG 4 cut(s) 199, 1049, 1090, 1091
BstSFI CTRYAG 1 cut(s) 354
BstUI CGCG 2 cut(s) 638, 719
BstV1I GCAGC 5 cut(s) 33, 1117, 1126, 1174, 1183
BstX2I RGATCY 2 cut(s) 268, 358
BstYI RGATCY 2 cut(s) 268, 358
BstZ17I GTATAC 1 cut(s) 818
BstZI CGGCCG 1 cut(s) 1109
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 1111
BtsCI GGATG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 1002
BtuMI TCGCGA 1 cut(s) 719
CciNI GCGGCCGC 1 cut(s) 1109
Cfr10I RCCGGY 2 cut(s) 596, 809
Cfr13I GGNCC 1 cut(s) 527
Cfr9I CCCGGG 1 cut(s) 1091
CseI GACGC 2 cut(s) 644, 1177
CspAI ACCGGT 2 cut(s) 596, 809
CspCI CAANNNNNGTGG 2 cut(s) 160, 195
CviAII CATG 5 cut(s) 259, 291, 368, 887, 1245
DdeI CTNAG 5 cut(s) 6, 412, 451, 506, 523
DpnI GATC 8 cut(s) 205, 270, 301, 360, 504, 576, 769, 902
DpnII GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
EaeI YGGCCR 1 cut(s) 1109
EagI CGGCCG 1 cut(s) 1109
Eam1104I CTCTTC 3 cut(s) 243, 495, 606
EarI CTCTTC 3 cut(s) 243, 495, 606
EciI GGCGGA 1 cut(s) 1155
EclXI CGGCCG 1 cut(s) 1109
Eco47I GGWCC 1 cut(s) 527
Eco52I CGGCCG 1 cut(s) 1109
Eco57I CTGAAG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 1091
EcoO109I RGGNCCY 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 1099
EcoRII CCWGG 2 cut(s) 199, 1049
EcoT22I ATGCAT 1 cut(s) 877
FaeI CATG 5 cut(s) 262, 294, 371, 890, 1248
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 774, 806
FatI CATG 5 cut(s) 258, 290, 367, 886, 1244
FblI GTMKAC 1 cut(s) 817
FokI GGATG 1 cut(s) 590
FspBI CTAG 1 cut(s) 401
HaeIII GGCC 1 cut(s) 1111
HgaI GACGC 2 cut(s) 644, 1177
Hin1II CATG 5 cut(s) 262, 294, 371, 890, 1248
HincII GTYRAC 1 cut(s) 807
HindII GTYRAC 1 cut(s) 807
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 8 cut(s) 117, 447, 467, 640, 824, 931, 988, 1162
HpaI GTTAAC 1 cut(s) 807
Hpy166II GTNNAC 3 cut(s) 568, 807, 818
Hpy188III TCNNGA 4 cut(s) 494, 718, 893, 965
Hpy8I GTNNAC 3 cut(s) 568, 807, 818
Hpy99I CGWCG 3 cut(s) 668, 751, 1171
HpyCH4III ACNGT 4 cut(s) 179, 440, 630, 1006
HpyCH4IV ACGT 1 cut(s) 861
HpyCH4V TGCA 2 cut(s) 371, 875
HpyF10VI GCNNNNNNNGC 6 cut(s) 129, 135, 233, 1111, 1114, 1187
HpyF3I CTNAG 5 cut(s) 6, 412, 451, 506, 523
HpySE526I ACGT 1 cut(s) 861
Hsp92II CATG 5 cut(s) 262, 294, 371, 890, 1248
KspAI GTTAAC 1 cut(s) 807
Kzo9I GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
LguI GCTCTTC 2 cut(s) 243, 606
LmnI GCTCC 2 cut(s) 217, 1142
Lsp1109I GCAGC 5 cut(s) 33, 1117, 1126, 1174, 1183
LweI GCATC 1 cut(s) 70
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 861
MaeIII GTNAC 2 cut(s) 440, 541
MalI GATC 8 cut(s) 205, 270, 301, 360, 504, 576, 769, 902
MboI GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
MboII GAAGA 8 cut(s) 22, 25, 40, 230, 482, 623, 1012, 1038
MflI RGATCY 2 cut(s) 268, 358
MluCI AATT 9 cut(s) 659, 691, 741, 846, 924, 947, 1015, 1081, 1099
MmeI TCCRAC 6 cut(s) 88, 277, 646, 770, 1180, 1190
Mph1103I ATGCAT 1 cut(s) 877
MseI TTAA 8 cut(s) 33, 363, 585, 593, 711, 777, 806, 996
MspA1I CMGCKG 1 cut(s) 1108
MspR9I CCNGG 4 cut(s) 201, 1051, 1092, 1093
MvaI CCWGG 2 cut(s) 201, 1051
MvnI CGCG 2 cut(s) 638, 719
MwoI GCNNNNNNNGC 6 cut(s) 129, 135, 233, 1111, 1114, 1187
NciI CCSGG 2 cut(s) 1092, 1093
NdeII GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
NlaIII CATG 5 cut(s) 262, 294, 371, 890, 1248
NlaIV GGNNCC 2 cut(s) 270, 963
NmuCI GTSAC 1 cut(s) 541
NotI GCGGCCGC 1 cut(s) 1109
NruI TCGCGA 1 cut(s) 719
NsiI ATGCAT 1 cut(s) 877
PciSI GCTCTTC 2 cut(s) 243, 606
PfeI GAWTC 8 cut(s) 117, 447, 467, 640, 824, 931, 988, 1162
PfoI TCCNGGA 1 cut(s) 199
PinAI ACCGGT 2 cut(s) 596, 809
PpuMI RGGWCCY 1 cut(s) 527
PshBI ATTAAT 2 cut(s) 711, 996
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 199, 1049
PspGI CCWGG 2 cut(s) 199, 1049
PspN4I GGNNCC 2 cut(s) 270, 963
PspPI GGNCC 1 cut(s) 527
PspPPI RGGWCCY 1 cut(s) 527
PsuI RGATCY 2 cut(s) 268, 358
RruI TCGCGA 1 cut(s) 719
SapI GCTCTTC 2 cut(s) 243, 606
SaqAI TTAA 8 cut(s) 33, 363, 585, 593, 711, 777, 806, 996
Sau3AI GATC 8 cut(s) 203, 268, 299, 358, 502, 574, 767, 900
Sau96I GGNCC 1 cut(s) 527
ScrFI CCNGG 4 cut(s) 201, 1051, 1092, 1093
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 354
SinI GGWCC 1 cut(s) 527
SmaI CCCGGG 1 cut(s) 1093
Sse9I AATT 9 cut(s) 659, 691, 741, 846, 924, 947, 1015, 1081, 1099
SspI AATATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 401
StyD4I CCNGG 4 cut(s) 199, 1049, 1090, 1091
TaaI ACNGT 4 cut(s) 179, 440, 630, 1006
TaiI ACGT 1 cut(s) 864
TaqI TCGA 2 cut(s) 573, 770
TasI AATT 9 cut(s) 659, 691, 741, 846, 924, 947, 1015, 1081, 1099
TauI GCSGC 6 cut(s) 105, 126, 129, 132, 1111, 1114
TfiI GAWTC 8 cut(s) 117, 447, 467, 640, 824, 931, 988, 1162
Tru1I TTAA 8 cut(s) 33, 363, 585, 593, 711, 777, 806, 996
Tru9I TTAA 8 cut(s) 33, 363, 585, 593, 711, 777, 806, 996
TscAI CASTG 1 cut(s) 1009
TseFI GTSAC 1 cut(s) 541
TseI GCWGC 5 cut(s) 21, 1105, 1114, 1171, 1187
Tsp45I GTSAC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 592, 1224
TspMI CCCGGG 1 cut(s) 1091
TspRI CASTG 1 cut(s) 1009
VpaK11BI GGWCC 1 cut(s) 527
VspI ATTAAT 2 cut(s) 711, 996
XapI RAATTY 5 cut(s) 691, 741, 924, 947, 1099
XmaI CCCGGG 1 cut(s) 1091
XmiI GTMKAC 1 cut(s) 817
XspI CTAG 1 cut(s) 401
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.