Rh2DG068500

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012081
Physical Location & Seq
Reverse (-)
5184523 .. 5185341
819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG068500.1

Sequence Viewer

Length: 819 bp
ATGTCCCTGATCCATCTCAACAGCAACAGATTTTCAGGCACAATTCCTGACACTTTCACAGACCTCAACTCTCTCCAAGAGCTTGACCTCAGTAACAACCAATTCTCAGGCCCCTTCCCCACCACCACATTATACATTCCCAACCTCATTTACCTTGACCTCAGATTCAACAACTTCACTGGTTCAATTCCTGATGAGCTCTTCAACAAAAACCTAGATGCAATTTTTCTCAACAACAACCAATTCGAAGGTGAGCTGCCTCAGAGTTTGGGGAGTGCACAAGCTTCTGTCATCAATTTAGCTAATAACAAGTTCAGTGGCAACTTCCCAAGTAACTTTGGGTTCATTGGCACCAAATTGAAGGAGATTTTGTTCCTCAATAATCAACTAACTGGTTGCATCCCTGAGGGAGTTGGCCTTTTCTCTGAGATCCAAGTCTTTGATGTGAGCTTCAACTCTCTGATGGGCCATTTGCCAGACACAATCTCTTGCCTCCAAGAAATTGAAGTACTAAACTTGGCACACAACAAGCTCTCTGGGGTTTTGCCAGACCTTGTTTGCTCTCTGAAAAGCCTGGTCAATCTGACTGTTGCTTATAATTTCTTTTCTGGGTTCAGCCAGGAATGTGCCAAATTGTATTACAGGAATGTGGGGTTTGATTTCTCATTGAATTGCATTCCTGGGAAGAACATGCAGAGACCTCAGCCTCAGTGTTCTTTGATTCCTGGAGGTGGTTTAAATTGTCTGAGAATTCCTGGTGCAAAGCCTCTTGTTTGTGGCTCAGTCCTACCAAGCTCATCATCATCATCATCTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8

Protein Analysis

272

Amino Acids

29.66

Weight (kDa)

4.99

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 4 - 59 9.8e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G19780 AT4G29240 AT4G29240
fragaria_vesca FvH4_1g06510
malus_domestica MD15G1200000.v1.1
prunus_persica Prupe.7G217200_v2.0.a1
pyrus_communis pycom02g05420 pycom15g17750
rosa_chinensis RchiOBHm_Chr2g0092261
rosa_laevigata RLG00000016291
rosa_multiflora Rmu_sc0000524.1_g000033 Rmu_sc0030540.1_g000002
rosa_roxburghii Rroxscaffold_2G00149320
rosa_rugosa Rorug02G0024100
rosa_samantha Rh2AG070000 Rh2BG069500 Rh2CG070700 Rh2DG068500
rosa_wichuraiana Rw2G006220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 597
AccB1I GGYRCC 1 cut(s) 350
AclWI GGATC 2 cut(s) 4, 424
AcsI RAATTY 1 cut(s) 750
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 731
AgsI TTSAA 7 cut(s) 169, 186, 205, 361, 454, 506, 670
AjnI CCWGG 5 cut(s) 573, 618, 679, 724, 754
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
AluBI AGCT 8 cut(s) 82, 199, 256, 284, 302, 450, 532, 795
AluI AGCT 8 cut(s) 82, 199, 256, 284, 302, 450, 532, 795
Alw21I GWGCWC 2 cut(s) 201, 280
Alw26I GTCTC 1 cut(s) 691
Alw44I GTGCAC 1 cut(s) 276
AlwI GGATC 2 cut(s) 4, 424
AoxI GGCC 3 cut(s) 109, 415, 466
ApaLI GTGCAC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 750
AspS9I GGNCC 2 cut(s) 110, 466
AsuHPI GGTGA 1 cut(s) 263
AsuII TTCGAA 1 cut(s) 246
AxyI CCTNAGG 1 cut(s) 405
BaeGI GKGCMC 1 cut(s) 280
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 201
Bbv12I GWGCWC 2 cut(s) 201, 280
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 1 cut(s) 243
BccI CCATC 2 cut(s) 21, 457
BciT130I CCWGG 5 cut(s) 575, 620, 681, 726, 756
BcoDI GTCTC 1 cut(s) 691
BfaI CTAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 510
Bme1390I CCNGG 5 cut(s) 575, 620, 681, 726, 756
BmgT120I GGNCC 2 cut(s) 110, 466
BmiI GGNNCC 2 cut(s) 112, 352
BmrFI CCNGG 5 cut(s) 575, 620, 681, 726, 756
BmsI GCATC 2 cut(s) 208, 408
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 702
Bpu14I TTCGAA 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 1 cut(s) 680
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 1 cut(s) 731
Bse1I ACTGG 2 cut(s) 184, 397
Bse21I CCTNAGG 1 cut(s) 405
BseBI CCWGG 5 cut(s) 575, 620, 681, 726, 756
BseDI CCNNGG 1 cut(s) 680
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 731
BseNI ACTGG 2 cut(s) 184, 397
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 1 cut(s) 243
BshFI GGCC 3 cut(s) 111, 417, 468
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 2 cut(s) 201, 280
BslI CCNNNNNNNGG 1 cut(s) 731
BsmAI GTCTC 1 cut(s) 691
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 3 cut(s) 111, 417, 468
Bso31I GGTCTC 1 cut(s) 691
Bsp119I TTCGAA 1 cut(s) 246
Bsp1286I GDGCHC 2 cut(s) 201, 280
Bsp143I GATC 2 cut(s) 9, 429
BspANI GGCC 3 cut(s) 111, 417, 468
BspLI GGNNCC 2 cut(s) 112, 352
BspPI GGATC 2 cut(s) 4, 424
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 691
BsrI ACTGG 2 cut(s) 184, 397
BssECI CCNNGG 1 cut(s) 680
BssMI GATC 2 cut(s) 9, 429
Bst2UI CCWGG 5 cut(s) 575, 620, 681, 726, 756
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 1 cut(s) 206
BstBI TTCGAA 1 cut(s) 246
BstF5I GGATG 1 cut(s) 399
BstKTI GATC 2 cut(s) 12, 432
BstMAI GTCTC 1 cut(s) 691
BstMBI GATC 2 cut(s) 9, 429
BstNI CCWGG 5 cut(s) 575, 620, 681, 726, 756
BstNSI RCATGY 1 cut(s) 694
BstSCI CCNGG 5 cut(s) 573, 618, 679, 724, 754
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
Bsu36I CCTNAGG 1 cut(s) 405
BsuRI GGCC 3 cut(s) 111, 417, 468
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 3 cut(s) 177, 322, 716
Cfr13I GGNCC 2 cut(s) 110, 466
Csp6I GTAC 1 cut(s) 509
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 2 cut(s) 691, 816
CviQI GTAC 1 cut(s) 509
DpnI GATC 2 cut(s) 11, 431
DpnII GATC 2 cut(s) 9, 429
DraI TTTAAA 1 cut(s) 738
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 691
Eco53kI GAGCTC 1 cut(s) 199
Eco81I CCTNAGG 1 cut(s) 405
EcoICRI GAGCTC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 750
EcoRII CCWGG 5 cut(s) 573, 618, 679, 724, 754
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 2 cut(s) 694, 819
FaiI YATR 4 cut(s) 133, 597, 692, 817
FatI CATG 2 cut(s) 690, 815
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 1 cut(s) 215
GluI GCNGC 1 cut(s) 257
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 3 cut(s) 111, 417, 468
Hin1II CATG 2 cut(s) 694, 819
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 2 cut(s) 165, 721
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 7 cut(s) 164, 264, 427, 462, 567, 585, 747
Hpy188III TCNNGA 2 cut(s) 47, 191
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 124, 242, 355
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 6 cut(s) 221, 278, 399, 675, 694, 761
Hsp92II CATG 2 cut(s) 694, 819
Kzo9I GATC 2 cut(s) 9, 429
LguI GCTCTTC 1 cut(s) 206
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 2 cut(s) 208, 408
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 92, 332
MalI GATC 2 cut(s) 11, 431
MboI GATC 2 cut(s) 9, 429
MboII GAAGA 2 cut(s) 193, 697
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 2 cut(s) 201, 280
MseI TTAA 1 cut(s) 737
MslI CAYNNNNRTG 1 cut(s) 814
MspR9I CCNGG 5 cut(s) 575, 620, 681, 726, 756
Mva1269I GAATGC 1 cut(s) 675
MvaI CCWGG 5 cut(s) 575, 620, 681, 726, 756
NdeII GATC 2 cut(s) 9, 429
NlaIII CATG 2 cut(s) 694, 819
NlaIV GGNNCC 2 cut(s) 112, 352
NspI RCATGY 1 cut(s) 694
NspV TTCGAA 1 cut(s) 246
PciSI GCTCTTC 1 cut(s) 206
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 165, 721
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 1 cut(s) 258
PsiI TTATAA 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 5 cut(s) 573, 618, 679, 724, 754
PspGI CCWGG 5 cut(s) 573, 618, 679, 724, 754
PspN4I GGNNCC 2 cut(s) 112, 352
PspPI GGNCC 2 cut(s) 110, 466
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 814
SacI GAGCTC 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 2 cut(s) 9, 429
Sau96I GGNCC 2 cut(s) 110, 466
ScaI AGTACT 1 cut(s) 510
ScrFI CCNGG 5 cut(s) 575, 620, 681, 726, 756
SduI GDGCHC 2 cut(s) 201, 280
SfaNI GCATC 2 cut(s) 208, 408
SfuI TTCGAA 1 cut(s) 246
SmiMI CAYNNNNRTG 1 cut(s) 814
SspMI CTAG 1 cut(s) 215
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 5 cut(s) 573, 618, 679, 724, 754
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 1 cut(s) 246
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 2 cut(s) 165, 721
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TscAI CASTG 3 cut(s) 184, 322, 716
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 334
TspRI CASTG 3 cut(s) 184, 322, 716
VneI GTGCAC 1 cut(s) 276
XapI RAATTY 1 cut(s) 750
XceI RCATGY 1 cut(s) 694
XspI CTAG 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.