AT2G20440

RabGAP TBC domain-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
8810644 .. 8813696
3053 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20440.2

Sequence Viewer

Length: 1278 bp
ATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGAAGATTTGCAAGGTTTCTATCCAGTTAGACCTGAATGTCAACCAGATGTTCCCAGGACCCGTTTTAAATCAAGGGCTGGAAAGACTCTAAGTGCTAGAAGATGGCACGCTGCCTTTACTGAAGATGGCCATTTGGATATGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCCTTCCATCAAAGGCGCTGTTTGGGAGTTTTTGTTAGGATGCTACGATCCAGACAGCACTTTTGAGGAAAGGAACATACTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGAATGTAAGAAAATGGTTCCTGTCATTGGTAGTGGCAAGTACGTCACAATGGCAGTCGTTCAAGAAAATGGGAACCCAATAGACGAATCTTCTGTAGAAAACCAAGGATGGATCGTGAAAAACACTGTTACAGATGAGAGAGTGCTACAATGGATGCTCTCACTACACCAGATCGGCCTTGATGTTGCTAGAACAGATCGGTATCTCTGTTTTTATGAGAATGATCGTAATCAATCAAAACTATGGGACGTTCTTGCCATATATACGTGGTTGAATCTTGATATTGGTTATGTTCAGGGAATGAATGATATATGTTCCCCAATGATAATCCTCTTTGATGATGAAGGCGACGCTTTCTGGTGCTTTGAGCGGGCAATGCGGAGACTAAGAGAAAATTTCAGGGCAACAGCAACATCAATGGGTGTCCAGACTCAACTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCCATCAACATCTAGAGGATCTCGATGGTGGGGAGTATCTATTTGCTATTCGGATGCTGATGGTACTTTTCAGGAGAGAATTCTCTTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGGCGATGGAGTACAATCCAACCATGTTTGCAACGTACGAGGAACTAGAAAACCGAAACAACGCAGCATCCGATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACAGTGGGCAGAACGAGCAACATCGCAACACGCTTGCTGTTTTTGTGGTCGCAAGCGTTCTACAGACAAAGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATACTAGGAGACATTGCGGGTAATCTTGACGCCAAAAAAGCATGTAAAGAAGCGTTGAAGATCCATGAAAAATTCCTGAAAAAGGCTAATAGTAATAAGCAATAA

Protein Analysis

425

Amino Acids

49.36

Weight (kDa)

8.25

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RabGAP-TBC PF00566 153 - 316 5.5e-36 Rab-GTPase-TBC domain
RabGap-TBC_2 PF23436 191 - 311 2.3e-07 RabGAP TBC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 72
AccBSI CCGCTC 1 cut(s) 706
AccI GTMKAC 1 cut(s) 196
AccII CGCG 1 cut(s) 204
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 5 cut(s) 12, 204, 706, 715, 1190
AclWI GGATC 7 cut(s) 257, 455, 800, 813, 840, 1001, 1228
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 4 cut(s) 210, 730, 893, 1244
AcuI CTGAAG 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 1203
AfaI GTAC 6 cut(s) 320, 377, 879, 917, 947, 971
AfiI CCNNNNNNNGG 2 cut(s) 362, 1255
AgsI TTSAA 5 cut(s) 398, 610, 1040, 1141, 1231
AjnI CCWGG 1 cut(s) 89
AluBI AGCT 1 cut(s) 928
AluI AGCT 1 cut(s) 928
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 4 cut(s) 712, 818, 1139, 1176
AlwI GGATC 7 cut(s) 257, 455, 800, 813, 840, 1001, 1228
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 3 cut(s) 163, 511, 1146
ApeKI GCWGC 3 cut(s) 9, 146, 998
ApoI RAATTY 4 cut(s) 210, 730, 893, 1244
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 2 cut(s) 204, 233
AspS9I GGNCC 1 cut(s) 93
AvaII GGWCC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 165
BamHI GGATCC 1 cut(s) 805
Bbv12I GWGCWC 1 cut(s) 783
BbvI GCAGC 2 cut(s) 133, 1010
BccI CCATC 8 cut(s) 132, 155, 230, 438, 825, 833, 868, 934
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 4 cut(s) 712, 818, 1139, 1176
BfaI CTAG 5 cut(s) 132, 525, 827, 980, 1178
BfmI CTRYAG 2 cut(s) 429, 1115
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 3 cut(s) 10, 147, 999
BlsI GCNGC 3 cut(s) 11, 148, 1000
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 4 cut(s) 95, 354, 410, 807
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 4 cut(s) 245, 480, 858, 1010
BmuI ACTGGG 1 cut(s) 782
BsaAI YACGTR 1 cut(s) 603
BsaBI GATNNNNATC 2 cut(s) 537, 564
BsaHI GRCGYC 1 cut(s) 1203
BsaJI CCNNGG 2 cut(s) 89, 439
BsaWI WCCGGW 1 cut(s) 29
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 917, 947
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 1255
Bse1I ACTGG 2 cut(s) 59, 777
Bse3DI GCAATG 2 cut(s) 717, 1185
Bse8I GATNNNNATC 2 cut(s) 537, 564
BseAI TCCGGA 1 cut(s) 29
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 89, 439
BseGI GGATG 6 cut(s) 214, 260, 449, 495, 873, 1001
BseJI GATNNNNATC 2 cut(s) 537, 564
BseLI CCNNNNNNNGG 2 cut(s) 362, 1255
BseMI GCAATG 2 cut(s) 717, 1185
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 2 cut(s) 59, 777
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 133, 1010
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 3 cut(s) 165, 513, 1148
BsiHKAI GWGCWC 1 cut(s) 783
BsiSI CCGG 1 cut(s) 30
BsiWI CGTACG 1 cut(s) 969
BslFI GGGAC 1 cut(s) 596
BslI CCNNNNNNNGG 2 cut(s) 362, 1255
BsmAI GTCTC 4 cut(s) 712, 818, 1139, 1176
BsmBI CGTCTC 2 cut(s) 818, 1139
BsmFI GGGAC 1 cut(s) 596
BsnI GGCC 3 cut(s) 165, 513, 1148
Bsp1286I GDGCHC 1 cut(s) 783
Bsp13I TCCGGA 1 cut(s) 29
Bsp143I GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
BspACI CCGC 5 cut(s) 12, 204, 706, 715, 1190
BspANI GGCC 3 cut(s) 165, 513, 1148
BspCNI CTCAG 1 cut(s) 288
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 95, 354, 410, 807
BspPI GGATC 7 cut(s) 257, 455, 800, 813, 840, 1001, 1228
BsrBI CCGCTC 1 cut(s) 706
BsrDI GCAATG 2 cut(s) 717, 1185
BsrI ACTGG 2 cut(s) 59, 777
BssECI CCNNGG 2 cut(s) 89, 439
BssMI GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
BssNAI GTATAC 1 cut(s) 197
BssNI GRCGYC 1 cut(s) 1203
BssT1I CCWWGG 1 cut(s) 439
Bst1107I GTATAC 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 91
Bst4CI ACNGT 5 cut(s) 323, 463, 802, 1026, 1058
BstACI GRCGYC 1 cut(s) 1203
BstBAI YACGTR 1 cut(s) 603
BstC8I GCNNGC 4 cut(s) 144, 708, 1089, 1108
BstDEI CTNAG 5 cut(s) 125, 188, 296, 722, 1156
BstENI CCTNNNNNAGG 1 cut(s) 1253
BstF5I GGATG 6 cut(s) 214, 260, 449, 495, 873, 1001
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 2 cut(s) 204, 233
BstKTI GATC 9 cut(s) 265, 450, 510, 535, 562, 808, 835, 1009, 1236
BstMAI GTCTC 4 cut(s) 712, 818, 1139, 1176
BstMBI GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
BstMWI GCNNNNNNNGC 3 cut(s) 712, 1069, 1211
BstNI CCWGG 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 1218
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 2 cut(s) 429, 1115
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 2 cut(s) 133, 1010
BstX2I RGATCY 3 cut(s) 805, 832, 1233
BstYI RGATCY 3 cut(s) 805, 832, 1233
BstZ17I GTATAC 1 cut(s) 197
BsuRI GGCC 3 cut(s) 165, 513, 1148
BtgZI GCGATG 2 cut(s) 953, 1061
BtsCI GGATG 6 cut(s) 214, 260, 449, 495, 873, 1001
BtsIMutI CAGTG 3 cut(s) 459, 807, 1063
Cac8I GCNNGC 4 cut(s) 144, 708, 1089, 1108
CfoI GCGC 2 cut(s) 204, 233
Cfr13I GGNCC 1 cut(s) 93
CseI GACGC 3 cut(s) 695, 917, 1211
Csp6I GTAC 6 cut(s) 319, 376, 878, 916, 946, 970
CviAII CATG 4 cut(s) 327, 958, 1215, 1238
CviJI RGCY 7 cut(s) 113, 165, 513, 928, 1148, 1155, 1259
CviKI_1 RGCY 7 cut(s) 113, 165, 513, 928, 1148, 1155, 1259
CviQI GTAC 6 cut(s) 319, 376, 878, 916, 946, 970
DdeI CTNAG 5 cut(s) 125, 188, 296, 722, 1156
DpnI GATC 9 cut(s) 264, 449, 509, 534, 561, 807, 834, 1008, 1235
DpnII GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
DraI TTTAAA 1 cut(s) 103
DrdI GACNNNNNNGTC 1 cut(s) 72
DseDI GACNNNNNNGTC 1 cut(s) 72
EaeI YGGCCR 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 1253
EcoO109I RGGNCCY 1 cut(s) 93
EcoRI GAATTC 2 cut(s) 210, 893
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 439
Esp3I CGTCTC 2 cut(s) 818, 1139
FaeI CATG 4 cut(s) 330, 961, 1218, 1241
FaqI GGGAC 1 cut(s) 596
FatI CATG 4 cut(s) 326, 957, 1214, 1237
FauI CCCGC 2 cut(s) 699, 1183
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 10, 147, 999
FokI GGATG 6 cut(s) 201, 267, 456, 502, 880, 988
Fsp4HI GCNGC 3 cut(s) 10, 147, 999
FspBI CTAG 5 cut(s) 132, 525, 827, 980, 1178
GlaI GCGC 2 cut(s) 203, 232
GluI GCNGC 3 cut(s) 10, 147, 999
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 3 cut(s) 165, 513, 1148
HapII CCGG 1 cut(s) 30
HgaI GACGC 3 cut(s) 695, 917, 1211
HhaI GCGC 2 cut(s) 204, 233
Hin1I GRCGYC 1 cut(s) 1203
Hin1II CATG 4 cut(s) 330, 961, 1218, 1241
Hin6I GCGC 2 cut(s) 202, 231
HinP1I GCGC 2 cut(s) 202, 231
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HinfI GANTC 5 cut(s) 121, 301, 422, 610, 766
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 77, 197
Hpy188I TCNGA 3 cut(s) 867, 1006, 1173
Hpy8I GTNNAC 2 cut(s) 77, 197
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 4 cut(s) 228, 303, 674, 1135
HpyCH4III ACNGT 5 cut(s) 323, 463, 802, 1026, 1058
HpyCH4IV ACGT 6 cut(s) 193, 378, 585, 602, 968, 1132
HpyCH4V TGCA 3 cut(s) 46, 326, 965
HpyF10VI GCNNNNNNNGC 3 cut(s) 712, 1069, 1211
HpyF3I CTNAG 5 cut(s) 125, 188, 296, 722, 1156
HpySE526I ACGT 6 cut(s) 193, 378, 585, 602, 968, 1132
Hsp92I GRCGYC 1 cut(s) 1203
Hsp92II CATG 4 cut(s) 330, 961, 1218, 1241
HspAI GCGC 2 cut(s) 202, 231
Kpn2I TCCGGA 1 cut(s) 29
Kzo9I GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
LmnI GCTCC 2 cut(s) 313, 925
Lsp1109I GCAGC 2 cut(s) 133, 1010
LweI GCATC 4 cut(s) 245, 480, 858, 1010
MaeI CTAG 5 cut(s) 132, 525, 827, 980, 1178
MaeII ACGT 6 cut(s) 193, 378, 585, 602, 968, 1132
MaeIII GTNAC 3 cut(s) 379, 463, 1014
MalI GATC 9 cut(s) 264, 449, 509, 534, 561, 807, 834, 1008, 1235
MbiI CCGCTC 1 cut(s) 706
MboI GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
MboII GAAGA 6 cut(s) 50, 147, 170, 347, 417, 1243
MflI RGATCY 3 cut(s) 805, 832, 1233
MhlI GDGCHC 1 cut(s) 783
MlsI TGGCCA 1 cut(s) 165
MluCI AATT 4 cut(s) 210, 730, 893, 1244
MluNI TGGCCA 1 cut(s) 165
MlyI GAGTC 2 cut(s) 115, 760
MmeI TCCRAC 1 cut(s) 977
MnlI CCTC 9 cut(s) 26, 200, 274, 291, 677, 819, 823, 967, 1138
Mox20I TGGCCA 1 cut(s) 165
MroI TCCGGA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 165
MseI TTAA 2 cut(s) 102, 795
Msp20I TGGCCA 1 cut(s) 165
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 712, 1069, 1211
NdeII GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
NlaIII CATG 4 cut(s) 330, 961, 1218, 1241
NlaIV GGNNCC 4 cut(s) 95, 354, 410, 807
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 1 cut(s) 1218
PcsI WCGNNNNNNNCGW 1 cut(s) 1002
PfeI GAWTC 3 cut(s) 301, 422, 610
Pfl23II CGTACG 1 cut(s) 969
PkrI GCNGC 3 cut(s) 11, 148, 1000
PleI GAGTC 2 cut(s) 115, 760
PpsI GAGTC 2 cut(s) 115, 760
Ppu21I YACGTR 1 cut(s) 603
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspLI CGTACG 1 cut(s) 969
PspN4I GGNNCC 4 cut(s) 95, 354, 410, 807
PspPI GGNCC 1 cut(s) 93
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 3 cut(s) 805, 832, 1233
RsaI GTAC 6 cut(s) 320, 377, 879, 917, 947, 971
RsaNI GTAC 6 cut(s) 319, 376, 878, 916, 946, 970
SaqAI TTAA 2 cut(s) 102, 795
SatI GCNGC 3 cut(s) 10, 147, 999
Sau3AI GATC 9 cut(s) 262, 447, 507, 532, 559, 805, 832, 1006, 1233
Sau96I GGNCC 1 cut(s) 93
SchI GAGTC 2 cut(s) 115, 760
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 4 cut(s) 245, 480, 858, 1010
SfcI CTRYAG 2 cut(s) 429, 1115
SinI GGWCC 1 cut(s) 93
Sse9I AATT 4 cut(s) 210, 730, 893, 1244
SsiI CCGC 5 cut(s) 12, 204, 706, 715, 1190
SspMI CTAG 5 cut(s) 132, 525, 827, 980, 1178
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 5 cut(s) 323, 463, 802, 1026, 1058
TaiI ACGT 6 cut(s) 196, 381, 588, 605, 971, 1135
TaqI TCGA 1 cut(s) 837
TasI AATT 4 cut(s) 210, 730, 893, 1244
TatI WGTACW 1 cut(s) 945
TfiI GAWTC 3 cut(s) 301, 422, 610
Tru1I TTAA 2 cut(s) 102, 795
Tru9I TTAA 2 cut(s) 102, 795
TscAI CASTG 3 cut(s) 466, 807, 1063
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 3 cut(s) 9, 146, 998
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 4 cut(s) 203, 653, 693, 1254
TspRI CASTG 3 cut(s) 466, 807, 1063
VpaK11BI GGWCC 1 cut(s) 93
XagI CCTNNNNNAGG 1 cut(s) 1253
XapI RAATTY 4 cut(s) 210, 730, 893, 1244
XbaI TCTAGA 1 cut(s) 826
XceI RCATGY 1 cut(s) 1218
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 5 cut(s) 132, 525, 827, 980, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.