Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Forward (+)

14110799 .. 14113777

Gene Structure 2979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28550.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAGATTTGCAAGGTTTCTATCCAGTTAGAGAAGAATGTGTAGCAGATGTTCCCAGGACTCGATTTAAATCAAGGGCTGGTAAAACTCTTAGTGCTAGAAAATGGCACGCTGCGTTTACTGGAGATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCGAGGGGGAATTCATCCCTCAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGCTTACGATCCAGACAGCACTTTTGAAGAACGGAACAAGTTGAGGAATCACAGAAGGGAGCAGTATTATGCTTGGAAAGAAGAATGTAAGAATATGGTTCCTCTTGTTGGTAGCGGAAAGTTTGTCACGATGGCAGTTGTTGCGGAAGATGGGCAGCCATTAGAAGAATCCTCAGTAGACAATCAAGAATGGGTTGTGAAAACCGCTATAACAGACAAGCGTGTGCTCCAGTGGATGCTTGTGTTGAGTCAAATCGGTCTCGATGTTGTTAGAACGGATCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTATGGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAGGGAATGAACGACATATGTTCCCCCATGATAATCCTACTTGAAGATGAAGCCGACGCTTTCTGGTGCTTTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACAGCAACATCAATGGGCGTCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTCCATCAACATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTATTGTTCAGAAGAGAGTTTTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTATGGAATACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATGAACAACTCCTCAGGACAGGATCCGAGGTTACTTAAGCAGTATGGAAAATTTGAGAGAAAATATATAAAGAGTGGCCAGAACGAGCAACACAACACGCTTGCTGTTTTTGTTGTGGCTAGTGTTCTTGAAACAAAGAACAAACGTCTCTTGAAGGAAGCTAAAGGCCTAGATGACGTTGTTCAGATATTGGGAGGTATTGCAGGTAATTTGGACGCGAGAAAAGCGTGTAAAGAAGCGTTGAAGATTCATGAAAAATTCCTGAAAAAGGCTAATAGTAAGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

424

Amino Acids

49.11

Weight (kDa)

7.11

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	145 - 311	1.7e-36	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	191 - 308	2.6e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1181
AccI	GTMKAC	2 cut(s)	196, 432
AccII	CGCG	1 cut(s)	1205
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	3 cut(s)	369, 398, 459
AclWI	GGATC	6 cut(s)	257, 540, 800, 840, 1004, 1017
AcoI	YGGCCR	1 cut(s)	1063
AcsI	RAATTY	4 cut(s)	210, 730, 1037, 1244
AcyI	GRCGYC	1 cut(s)	759
AfaI	GTAC	1 cut(s)	917
AfiI	CCNNNNNNNGG	3 cut(s)	362, 620, 1255
AflII	CTTAAG	1 cut(s)	1022
AgsI	TTSAA	5 cut(s)	281, 674, 1118, 1141, 1231
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	4 cut(s)	257, 772, 928, 1148
AluI	AGCT	4 cut(s)	257, 772, 928, 1148
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	518, 1139
AlwI	GGATC	6 cut(s)	257, 540, 800, 840, 1004, 1017
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	2 cut(s)	1063, 1153
ApeKI	GCWGC	2 cut(s)	146, 409
ApoI	RAATTY	4 cut(s)	210, 730, 1037, 1244
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
Asp700I	GAANNNNTTC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	1000
BalI	TGGCCA	1 cut(s)	1065
BamHI	GGATCC	1 cut(s)	1009
BbsI	GAAGAC	1 cut(s)	724
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	2 cut(s)	133, 421
BccI	CCATC	6 cut(s)	155, 379, 398, 602, 825, 868
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	518, 1139
BfaI	CTAG	3 cut(s)	132, 1107, 1157
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	1181
BisI	GCNGC	2 cut(s)	147, 410
BlsI	GCNGC	2 cut(s)	148, 411
Bme1390I	CCNGG	1 cut(s)	91
BmiI	GGNNCC	3 cut(s)	354, 815, 1011
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	3 cut(s)	480, 898, 974
BpiI	GAAGAC	1 cut(s)	724
BpmI	CTGGAG	2 cut(s)	177, 467
BpuEI	CTTGAG	1 cut(s)	848
BsaBI	GATNNNNATC	2 cut(s)	103, 537
BsaHI	GRCGYC	1 cut(s)	759
BsaI	GGTCTC	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	89, 809, 1013
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 917, 947
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 620, 1255
Bse1I	ACTGG	3 cut(s)	59, 160, 484
Bse21I	CCTNAGG	1 cut(s)	1000
Bse3DI	GCAATG	1 cut(s)	717
Bse8I	GATNNNNATC	2 cut(s)	103, 537
BseAI	TCCGGA	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	3 cut(s)	89, 809, 1013
BseGI	GGATG	2 cut(s)	214, 495
BseJI	GATNNNNATC	2 cut(s)	103, 537
BseLI	CCNNNNNNNGG	3 cut(s)	362, 620, 1255
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	3 cut(s)	441, 782, 1014
BseNI	ACTGG	3 cut(s)	59, 160, 484
BseRI	GAGGAG	1 cut(s)	988
BseXI	GCAGC	2 cut(s)	133, 421
BseYI	CCCAGC	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	1205
BshFI	GGCC	2 cut(s)	1065, 1155
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	3 cut(s)	362, 620, 1255
BsmAI	GTCTC	2 cut(s)	518, 1139
BsmBI	CGTCTC	1 cut(s)	1139
BsnI	GGCC	2 cut(s)	1065, 1155
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	5 cut(s)	262, 532, 805, 832, 1009
BspACI	CCGC	3 cut(s)	369, 398, 459
BspANI	GGCC	2 cut(s)	1065, 1155
BspCNI	CTCAG	3 cut(s)	440, 781, 1013
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	1205
BspHI	TCATGA	1 cut(s)	1237
BspLI	GGNNCC	3 cut(s)	354, 815, 1011
BspMI	ACCTGC	1 cut(s)	1181
BspPI	GGATC	6 cut(s)	257, 540, 800, 840, 1004, 1017
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	3 cut(s)	59, 160, 484
BssECI	CCNNGG	3 cut(s)	89, 809, 1013
BssMI	GATC	5 cut(s)	262, 532, 805, 832, 1009
BssNAI	GTATAC	1 cut(s)	197
BssNI	GRCGYC	1 cut(s)	759
Bst1107I	GTATAC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	802, 842
Bst6I	CTCTTC	1 cut(s)	883
BstACI	GRCGYC	1 cut(s)	759
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	3 cut(s)	144, 708, 1089
BstDEI	CTNAG	5 cut(s)	125, 427, 722, 768, 1000
BstENI	CCTNNNNNAGG	1 cut(s)	1253
BstF5I	GGATG	2 cut(s)	214, 495
BstFNI	CGCG	1 cut(s)	1205
BstKTI	GATC	5 cut(s)	265, 535, 808, 835, 1012
BstMAI	GTCTC	2 cut(s)	518, 1139
BstMBI	GATC	5 cut(s)	262, 532, 805, 832, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	395, 712, 778, 1211
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	1205
BstV1I	GCAGC	2 cut(s)	133, 421
BstV2I	GAAGAC	1 cut(s)	724
BstX2I	RGATCY	2 cut(s)	832, 1009
BstYI	RGATCY	2 cut(s)	832, 1009
BstZ17I	GTATAC	1 cut(s)	197
Bsu36I	CCTNAGG	1 cut(s)	1000
BsuRI	GGCC	2 cut(s)	1065, 1155
BtsCI	GGATG	2 cut(s)	214, 495
BtsIMutI	CAGTG	1 cut(s)	491
BveI	ACCTGC	1 cut(s)	1181
Cac8I	GCNNGC	3 cut(s)	144, 708, 1089
CciI	TCATGA	1 cut(s)	1237
CseI	GACGC	3 cut(s)	695, 748, 1211
Csp6I	GTAC	1 cut(s)	916
CviAII	CATG	4 cut(s)	603, 658, 988, 1238
CviQI	GTAC	1 cut(s)	916
DdeI	CTNAG	5 cut(s)	125, 427, 722, 768, 1000
DpnI	GATC	5 cut(s)	264, 534, 807, 834, 1011
DpnII	GATC	5 cut(s)	262, 532, 805, 832, 1009
DraI	TTTAAA	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	1063
Eam1104I	CTCTTC	1 cut(s)	883
EarI	CTCTTC	1 cut(s)	883
Eco147I	AGGCCT	1 cut(s)	1155
Eco31I	GGTCTC	1 cut(s)	518
Eco81I	CCTNAGG	1 cut(s)	1000
EcoNI	CCTNNNNNAGG	1 cut(s)	1253
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	1139
FaeI	CATG	4 cut(s)	606, 661, 991, 1241
FatI	CATG	4 cut(s)	602, 657, 987, 1237
FauNDI	CATATG	1 cut(s)	647
FblI	GTMKAC	2 cut(s)	196, 432
Fnu4HI	GCNGC	2 cut(s)	147, 410
FokI	GGATG	2 cut(s)	201, 502
Fsp4HI	GCNGC	2 cut(s)	147, 410
FspBI	CTAG	3 cut(s)	132, 1107, 1157
GluI	GCNGC	2 cut(s)	147, 410
GsaI	CCCAGC	1 cut(s)	776
GsuI	CTGGAG	2 cut(s)	177, 467
HaeIII	GGCC	2 cut(s)	1065, 1155
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	3 cut(s)	695, 748, 1211
Hin1I	GRCGYC	1 cut(s)	759
Hin1II	CATG	4 cut(s)	606, 661, 991, 1241
HinfI	GANTC	6 cut(s)	94, 301, 422, 502, 766, 1234
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	153, 197, 433
Hpy188I	TCNGA	3 cut(s)	887, 1014, 1173
Hpy8I	GTNNAC	3 cut(s)	153, 197, 433
Hpy99I	CGWCG	2 cut(s)	689, 842
HpyAV	CCTTC	3 cut(s)	303, 910, 1135
HpyCH4III	ACNGT	2 cut(s)	802, 842
HpyCH4IV	ACGT	2 cut(s)	1132, 1164
HpyCH4V	TGCA	4 cut(s)	46, 710, 965, 1190
HpyF10VI	GCNNNNNNNGC	4 cut(s)	395, 712, 778, 1211
HpyF3I	CTNAG	5 cut(s)	125, 427, 722, 768, 1000
HpySE526I	ACGT	2 cut(s)	1132, 1164
Hsp92I	GRCGYC	1 cut(s)	759
Hsp92II	CATG	4 cut(s)	606, 661, 991, 1241
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	5 cut(s)	262, 532, 805, 832, 1009
LmnI	GCTCC	5 cut(s)	254, 313, 486, 819, 925
Lsp1109I	GCAGC	2 cut(s)	133, 421
LweI	GCATC	3 cut(s)	480, 898, 974
MaeI	CTAG	3 cut(s)	132, 1107, 1157
MaeII	ACGT	2 cut(s)	1132, 1164
MaeIII	GTNAC	2 cut(s)	379, 1017
MalI	GATC	5 cut(s)	264, 534, 807, 834, 1011
MboI	GATC	5 cut(s)	262, 532, 805, 832, 1009
MflI	RGATCY	2 cut(s)	832, 1009
MhlI	GDGCHC	1 cut(s)	483
MlsI	TGGCCA	1 cut(s)	1065
MluCI	AATT	5 cut(s)	210, 730, 1037, 1195, 1244
MluNI	TGGCCA	1 cut(s)	1065
MlyI	GAGTC	3 cut(s)	88, 511, 760
Mox20I	TGGCCA	1 cut(s)	1065
MroI	TCCGGA	1 cut(s)	29
MroXI	GAANNNNTTC	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	1065
MseI	TTAA	5 cut(s)	102, 608, 795, 1023, 1273
Msp20I	TGGCCA	1 cut(s)	1065
MspA1I	CMGCKG	1 cut(s)	772
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	1205
MwoI	GCNNNNNNNGC	4 cut(s)	395, 712, 778, 1211
NdeI	CATATG	1 cut(s)	647
NdeII	GATC	5 cut(s)	262, 532, 805, 832, 1009
NlaIII	CATG	4 cut(s)	606, 661, 991, 1241
NlaIV	GGNNCC	3 cut(s)	354, 815, 1011
NmeAIII	GCCGAG	1 cut(s)	790
NmuCI	GTSAC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	1237
PceI	AGGCCT	1 cut(s)	1155
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	301, 422, 1234
PkrI	GCNGC	2 cut(s)	148, 411
PleI	GAGTC	3 cut(s)	88, 510, 760
PpsI	GAGTC	3 cut(s)	88, 510, 760
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	1 cut(s)	772
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	3 cut(s)	354, 815, 1011
PsrI	GAACNNNNNNTAC	2 cut(s)	69, 101
PsuI	RGATCY	2 cut(s)	832, 1009
PvuII	CAGCTG	1 cut(s)	772
RsaI	GTAC	1 cut(s)	917
RsaNI	GTAC	1 cut(s)	916
SaqAI	TTAA	5 cut(s)	102, 608, 795, 1023, 1273
SatI	GCNGC	2 cut(s)	147, 410
Sau3AI	GATC	5 cut(s)	262, 532, 805, 832, 1009
SchI	GAGTC	3 cut(s)	88, 511, 760
ScrFI	CCNGG	1 cut(s)	91
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	3 cut(s)	480, 898, 974
SmiI	ATTTAAAT	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	827, 1022
SmoI	CTYRAG	2 cut(s)	827, 1022
Sse9I	AATT	5 cut(s)	210, 730, 1037, 1195, 1244
SseBI	AGGCCT	1 cut(s)	1155
SsiI	CCGC	3 cut(s)	369, 398, 459
SspMI	CTAG	3 cut(s)	132, 1107, 1157
StuI	AGGCCT	1 cut(s)	1155
StyD4I	CCNGG	1 cut(s)	89
SwaI	ATTTAAAT	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	802, 842
TaiI	ACGT	2 cut(s)	1135, 1167
TaqI	TCGA	3 cut(s)	97, 516, 837
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	5 cut(s)	210, 730, 1037, 1195, 1244
TfiI	GAWTC	3 cut(s)	301, 422, 1234
Tru1I	TTAA	5 cut(s)	102, 608, 795, 1023, 1273
Tru9I	TTAA	5 cut(s)	102, 608, 795, 1023, 1273
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	2 cut(s)	146, 409
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	6 cut(s)	203, 653, 693, 1004, 1226, 1254
TspGWI	ACGGA	2 cut(s)	301, 545
TspRI	CASTG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	1022
XagI	CCTNNNNNAGG	1 cut(s)	1253
XapI	RAATTY	4 cut(s)	210, 730, 1037, 1244
XmiI	GTMKAC	2 cut(s)	196, 432
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	3 cut(s)	132, 1107, 1157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.