Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Forward (+)

30463206 .. 30463716

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0189900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAAGGTCCATCCAATCCCCAAGAGGCGCAACATCTCCATCCAGTACCATTCAAGAAGCCCACTCTCTGAAGCCCAGGCCCTCCTCGGCCTCACCCACAAGAAGCTCCGCCGCCTCCCCCATGTCTTCAGCCGCGTCCTCGAGCTCCCTTTCCGCTCCGACGCCGACGTCCTCATCGAGGAGAACCCCGACTGCTTCCGCTTCGTCGCCGAAACCGAGAGCTTCGGCCACGACGTCAGGGCCCACACCGTCGAAATCCACCCCGGGGTGACCAAGATTGTCGTCAGGGAAAGAGGGTCCGCGGCGGAGCTGACGTTGGACGAGCTGGAGCTGGACATGTGGAGGTTCCGCCTGCCAGAGTCGACCCGGCCGGAGCTGGCCAGGGCGGTTTTTGTCGACGGGGAGCTCATTGTGACGGTGCCGAAGATGGAGGGGATGGAGAATTCGGAGGGCGGAGATGGTGGGGAGGTTTGGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

159

Amino Acids

18.03

Weight (kDa)

5.81

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	2 cut(s)	171, 237
AccB1I	GGYRCC	1 cut(s)	418
AccBSI	CCGCTC	1 cut(s)	156
AccI	GTMKAC	2 cut(s)	362, 396
AccII	CGCG	2 cut(s)	135, 302
AcoI	YGGCCR	3 cut(s)	226, 368, 378
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	2 cut(s)	90, 112
AcyI	GRCGYC	3 cut(s)	162, 168, 234
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	178, 265
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	1 cut(s)	54
AjnI	CCWGG	2 cut(s)	75, 380
AluBI	AGCT	8 cut(s)	106, 145, 222, 310, 325, 331, 376, 406
AluI	AGCT	8 cut(s)	106, 145, 222, 310, 325, 331, 376, 406
Alw21I	GWGCWC	2 cut(s)	147, 408
Ama87I	CYCGRG	2 cut(s)	140, 263
AoxI	GGCC	6 cut(s)	78, 88, 226, 240, 368, 378
ApaI	GGGCCC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	5 cut(s)	7, 79, 240, 241, 297
AsuC2I	CCSGG	3 cut(s)	264, 265, 367
AsuHPI	GGTGA	2 cut(s)	85, 280
AvaI	CYCGRG	2 cut(s)	140, 263
AvaII	GGWCC	2 cut(s)	7, 297
BaeGI	GKGCMC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	3 cut(s)	147, 244, 408
BbsI	GAAGAC	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	147, 408
BccI	CCATC	5 cut(s)	18, 47, 421, 430, 452
BciT130I	CCWGG	2 cut(s)	77, 382
BcnI	CCSGG	3 cut(s)	264, 265, 367
BisI	GCNGC	3 cut(s)	112, 133, 303
BlsI	GCNGC	3 cut(s)	113, 134, 304
Bme1390I	CCNGG	5 cut(s)	77, 264, 265, 367, 382
Bme18I	GGWCC	2 cut(s)	7, 297
BmeT110I	CYCGRG	2 cut(s)	140, 263
BmgT120I	GGNCC	5 cut(s)	7, 79, 240, 241, 297
BmiI	GGNNCC	4 cut(s)	242, 298, 347, 420
BmrFI	CCNGG	5 cut(s)	77, 264, 265, 367, 382
BpiI	GAAGAC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	347
BpuMI	CCSGG	3 cut(s)	264, 265, 367
BsaHI	GRCGYC	3 cut(s)	162, 168, 234
BsaJI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 265
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	2 cut(s)	77, 382
BseDI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BseGI	GGATG	3 cut(s)	10, 39, 441
BseLI	CCNNNNNNNGG	2 cut(s)	178, 265
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	74, 194
BseSI	GKGCMC	1 cut(s)	244
BseX3I	CGGCCG	1 cut(s)	368
Bsh1236I	CGCG	2 cut(s)	135, 302
Bsh1285I	CGRYCG	1 cut(s)	371
BshFI	GGCC	6 cut(s)	80, 90, 228, 242, 370, 380
BshNI	GGYRCC	1 cut(s)	418
BsiEI	CGRYCG	1 cut(s)	371
BsiHKAI	GWGCWC	2 cut(s)	147, 408
BsiHKCI	CYCGRG	2 cut(s)	140, 263
BsiSI	CCGG	3 cut(s)	264, 367, 371
BslI	CCNNNNNNNGG	2 cut(s)	178, 265
BsnI	GGCC	6 cut(s)	80, 90, 228, 242, 370, 380
BsoBI	CYCGRG	2 cut(s)	140, 263
Bsp120I	GGGCCC	1 cut(s)	240
Bsp1286I	GDGCHC	3 cut(s)	147, 244, 408
BspANI	GGCC	6 cut(s)	80, 90, 228, 242, 370, 380
BspFNI	CGCG	2 cut(s)	135, 302
BspLI	GGNNCC	4 cut(s)	242, 298, 347, 420
BspT107I	GGYRCC	1 cut(s)	418
BsrBI	CCGCTC	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	7 cut(s)	75, 85, 262, 263, 264, 300, 381
BssNI	GRCGYC	3 cut(s)	162, 168, 234
Bst2UI	CCWGG	2 cut(s)	77, 382
Bst4CI	ACNGT	2 cut(s)	250, 418
BstACI	GRCGYC	3 cut(s)	162, 168, 234
BstC8I	GCNNGC	2 cut(s)	353, 378
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	10, 39, 441
BstFNI	CGCG	2 cut(s)	135, 302
BstHHI	GCGC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	371
BstNI	CCWGG	2 cut(s)	77, 382
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	5 cut(s)	75, 262, 263, 365, 380
BstSLI	GKGCMC	1 cut(s)	244
BstUI	CGCG	2 cut(s)	135, 302
BstV2I	GAAGAC	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	368
BsuRI	GGCC	6 cut(s)	80, 90, 228, 242, 370, 380
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	10, 39, 441
Cac8I	GCNNGC	2 cut(s)	353, 378
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	5 cut(s)	7, 79, 240, 241, 297
Cfr42I	CCGCGG	1 cut(s)	303
Cfr9I	CCCGGG	1 cut(s)	263
CseI	GACGC	2 cut(s)	124, 170
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	2 cut(s)	122, 337
CviQI	GTAC	1 cut(s)	46
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	3 cut(s)	226, 368, 378
EagI	CGGCCG	1 cut(s)	368
EciI	GGCGGA	4 cut(s)	98, 320, 338, 468
Ecl136II	GAGCTC	2 cut(s)	145, 406
EclXI	CGGCCG	1 cut(s)	368
Eco24I	GRGCYC	3 cut(s)	147, 244, 408
Eco47I	GGWCC	2 cut(s)	7, 297
Eco52I	CGGCCG	1 cut(s)	368
Eco53kI	GAGCTC	2 cut(s)	145, 406
Eco57I	CTGAAG	2 cut(s)	90, 112
Eco88I	CYCGRG	2 cut(s)	140, 263
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	2 cut(s)	145, 406
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO109I	RGGNCCY	2 cut(s)	79, 240
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	2 cut(s)	75, 380
EcoT38I	GRGCYC	3 cut(s)	147, 244, 408
FaeI	CATG	2 cut(s)	125, 340
FaiI	YATR	2 cut(s)	123, 338
FatI	CATG	2 cut(s)	121, 336
FblI	GTMKAC	2 cut(s)	362, 396
Fnu4HI	GCNGC	3 cut(s)	112, 133, 303
FokI	GGATG	2 cut(s)	26, 448
FriOI	GRGCYC	3 cut(s)	147, 244, 408
Fsp4HI	GCNGC	3 cut(s)	112, 133, 303
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	112, 133, 303
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	6 cut(s)	80, 90, 228, 242, 370, 380
HapII	CCGG	3 cut(s)	264, 367, 371
HgaI	GACGC	2 cut(s)	124, 170
HhaI	GCGC	1 cut(s)	30
Hin1I	GRCGYC	3 cut(s)	162, 168, 234
Hin1II	CATG	2 cut(s)	125, 340
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	2 cut(s)	363, 397
HindII	GTYRAC	2 cut(s)	363, 397
HinfI	GANTC	1 cut(s)	359
HpaII	CCGG	3 cut(s)	264, 367, 371
HphI	GGTGA	2 cut(s)	85, 280
Hpy166II	GTNNAC	2 cut(s)	363, 397
Hpy188I	TCNGA	3 cut(s)	70, 160, 448
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	2 cut(s)	363, 397
Hpy99I	CGWCG	6 cut(s)	164, 170, 209, 236, 254, 401
HpyCH4III	ACNGT	2 cut(s)	250, 418
HpyCH4IV	ACGT	3 cut(s)	168, 234, 314
HpySE526I	ACGT	3 cut(s)	168, 234, 314
Hsp92I	GRCGYC	3 cut(s)	162, 168, 234
Hsp92II	CATG	2 cut(s)	125, 340
HspAI	GCGC	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	303
LmnI	GCTCC	7 cut(s)	111, 150, 161, 307, 328, 373, 403
MaeII	ACGT	3 cut(s)	168, 234, 314
MaeIII	GTNAC	2 cut(s)	268, 412
MbiI	CCGCTC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	118, 436
MhlI	GDGCHC	3 cut(s)	147, 244, 408
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	1 cut(s)	442
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	183, 297
Mox20I	TGGCCA	1 cut(s)	380
MscI	TGGCCA	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	3 cut(s)	264, 367, 371
MspR9I	CCNGG	5 cut(s)	77, 264, 265, 367, 382
MvaI	CCWGG	2 cut(s)	77, 382
MvnI	CGCG	2 cut(s)	135, 302
NciI	CCSGG	3 cut(s)	264, 265, 367
NlaIII	CATG	2 cut(s)	125, 340
NlaIV	GGNNCC	4 cut(s)	242, 298, 347, 420
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	268, 412
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	140
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	3 cut(s)	174, 213, 231
PkrI	GCNGC	3 cut(s)	113, 134, 304
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PscI	ACATGT	1 cut(s)	336
Psp124BI	GAGCTC	2 cut(s)	147, 408
Psp6I	CCWGG	2 cut(s)	75, 380
PspEI	GGTNACC	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	75, 380
PspN4I	GGNNCC	4 cut(s)	242, 298, 347, 420
PspOMI	GGGCCC	1 cut(s)	240
PspPI	GGNCC	5 cut(s)	7, 79, 240, 241, 297
PspXI	VCTCGAGB	1 cut(s)	140
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SacI	GAGCTC	2 cut(s)	147, 408
SacII	CCGCGG	1 cut(s)	303
SalI	GTCGAC	2 cut(s)	361, 395
SatI	GCNGC	3 cut(s)	112, 133, 303
Sau96I	GGNCC	5 cut(s)	7, 79, 240, 241, 297
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	5 cut(s)	77, 264, 265, 367, 382
SduI	GDGCHC	3 cut(s)	147, 244, 408
Sfr274I	CTCGAG	1 cut(s)	140
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	7, 297
SlaI	CTCGAG	1 cut(s)	140
SmaI	CCCGGG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	442
SstI	GAGCTC	2 cut(s)	147, 408
StyD4I	CCNGG	5 cut(s)	75, 262, 263, 365, 380
TaaI	ACNGT	2 cut(s)	250, 418
TaiI	ACGT	3 cut(s)	171, 237, 317
TaqI	TCGA	5 cut(s)	141, 177, 252, 362, 396
TasI	AATT	1 cut(s)	442
TauI	GCSGC	3 cut(s)	114, 135, 305
TseFI	GTSAC	2 cut(s)	268, 412
Tsp45I	GTSAC	2 cut(s)	268, 412
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	263
VpaK11BI	GGWCC	2 cut(s)	7, 297
XagI	CCTNNNNNAGG	1 cut(s)	176
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	140
XmaI	CCCGGG	1 cut(s)	263
XmiI	GTMKAC	2 cut(s)	362, 396
ZraI	GACGTC	2 cut(s)	169, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.