Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Forward (+)

27405735 .. 27411252

Gene Structure 5518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1180900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCATTGTTTTTTATGAAGAAAGCTTCAACAGCTGAGTTGGATGCTTTCTATCCTGTTAGACCAGAATGCCAAGTTGACATCCCGAAGACACACTTTAGGCTAAGGGCGGGGAAAACTCTTAGTGAAAGAAGATGGCATGCTGCGTTCTCTGAAGATGGTCATTTGGATATAGCTAAAGTGCTTAGACGAATCCAACGAGGGGGCGTCCATCCTGCAATCAAAGGTGTAGTTTGGGAGTTCTTGTTAGGTTGCTTTGATCCAAATAGCACCTTCGATGAACGAAATCAGCTCAGGCAATGCCGGAGGGAGCAGTATAACAGATTGAAGGCTGAATGCCAGAAGATGGTTCCAGTTATTGGCAGTGGAAAATTTCTTACAACACCAATCATCACGGATGATGGCCAACCGATAGAAGAATCAGCAAATGGCAATATGAGAGAGGATGCAAACCATGCTTCTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTGCATCAAATTGGTTTGGATGTTGCTCGCACGGATCGAACACTTGTCTTTTATGAGAGTCAAGCTAATCAGGCAAAACTTTGGGACATTCTTTCAATTTATGCTTGGGTGGACAATGATATTGGTTATGTTCAAGGAATGAATGATATATGCTCGCCAATGGTAATTCTTATTGAAAATGAAGCAGATGCCTATTGGTGTTTCGAACGTACTATGCGAAGGCTGAGAGAGAATTTTAGGTGCAGTGCGAGTTCGATAGGGGTGCAATCTCAGCTGGGTACACTCTCCCAAGTAATCAGAACTATTGATCCTAAACTTCATCAGCACCTTGATGATCTAGACGGCGGGGAGTATTTATTTGCTTTTCGCATGTTAATGGTCCTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCACTGTATCTGTGGGAGCTGATGTGGGCCATGGAATACAACCCAAACATTTTCTCATCGTATGAAGTTCCAAGTGGTGCTGCTACACCACCAAATGTAAATGACAAAGAACTAAAGCAATATGGCAAGTTCGAGAGAAACATTGTGAAGACAGGATACACAGAACAACATGGTGCACTTTCTGTCTTTCTTGTTGCAAGTGTTCTTGAGACCAAAAATAAGCAACTTTTAAAGGAGGCTAAGGGTCTAGATGATGTTGTCTCGATCTTAGGTGACATAACCGGAAATCTGGATGCTAAAAAGGCATGTAACGAGGCATTGAGGATTCACAAAAAGTACCTGAAGACCGTGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

422

Amino Acids

48.25

Weight (kDa)

7.6

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	145 - 315	3.9e-36	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	190 - 310	7.2e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1258
AccB7I	CCANNNNNTGG	2 cut(s)	346, 359
AciI	CCGC	2 cut(s)	110, 840
AclWI	GGATC	3 cut(s)	254, 537, 797
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	371, 727
AcuI	CTGAAG	2 cut(s)	174, 447
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	3 cut(s)	706, 775, 1244
AfiI	CCNNNNNNNGG	3 cut(s)	202, 346, 359
AgsI	TTSAA	5 cut(s)	30, 328, 591, 629, 671
AloI	GAACNNNNNNTCC	2 cut(s)	787, 819
AluBI	AGCT	8 cut(s)	26, 35, 176, 292, 490, 560, 769, 925
AluI	AGCT	8 cut(s)	26, 35, 176, 292, 490, 560, 769, 925
Alw21I	GWGCWC	1 cut(s)	1084
Alw26I	GTCTC	2 cut(s)	1109, 1171
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	3 cut(s)	254, 537, 797
AoxI	GGCC	2 cut(s)	403, 933
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	2 cut(s)	143, 986
ApoI	RAATTY	2 cut(s)	371, 727
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	2 cut(s)	874, 933
AsuHPI	GGTGA	1 cut(s)	1190
AsuII	TTCGAA	1 cut(s)	699
AvaII	GGWCC	1 cut(s)	874
BaeGI	GKGCMC	1 cut(s)	1084
BalI	TGGCCA	1 cut(s)	405
BarI	GAAGNNNNNNTAC	2 cut(s)	1046, 1078
BbsI	GAAGAC	3 cut(s)	95, 1061, 1256
Bbv12I	GWGCWC	1 cut(s)	1084
BbvI	GCAGC	2 cut(s)	130, 973
BccI	CCATC	5 cut(s)	129, 152, 219, 340, 395
BceAI	ACGGC	1 cut(s)	853
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciVI	GTATCC	1 cut(s)	1055
BcoDI	GTCTC	2 cut(s)	1109, 1171
BfaI	CTAG	2 cut(s)	833, 1154
BfuI	GTATCC	1 cut(s)	1055
BisI	GCNGC	2 cut(s)	144, 987
BlsI	GCNGC	2 cut(s)	145, 988
Bme18I	GGWCC	1 cut(s)	874
BmgT120I	GGNCC	2 cut(s)	874, 933
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	5 cut(s)	34, 436, 508, 673, 1189
BpiI	GAAGAC	3 cut(s)	95, 1061, 1256
Bpu10I	CCTNAGC	3 cut(s)	104, 293, 1146
Bpu14I	TTCGAA	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	1133
BsaHI	GRCGYC	1 cut(s)	207
BsaI	GGTCTC	1 cut(s)	1109
BsaJI	CCNNGG	1 cut(s)	936
BsaWI	WCCGGW	1 cut(s)	1187
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 914, 944
Bsc4I	CCNNNNNNNGG	3 cut(s)	202, 346, 359
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	936
BseGI	GGATG	7 cut(s)	49, 81, 211, 403, 451, 520, 1204
BseLI	CCNNNNNNNGG	3 cut(s)	202, 346, 359
BseMI	GCAATG	1 cut(s)	305
BseMII	CTCAG	4 cut(s)	27, 307, 710, 779
BseNI	ACTGG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	2 cut(s)	130, 973
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	757
BshFI	GGCC	2 cut(s)	405, 935
BsiHKAI	GWGCWC	1 cut(s)	1084
BsiSI	CCGG	2 cut(s)	304, 1188
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	3 cut(s)	202, 346, 359
BsmAI	GTCTC	2 cut(s)	1109, 1171
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	2 cut(s)	74, 341
BsnI	GGCC	2 cut(s)	405, 935
Bso31I	GGTCTC	1 cut(s)	1109
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	1 cut(s)	1084
Bsp143I	GATC	5 cut(s)	259, 529, 802, 829, 1170
Bsp19I	CCATGG	1 cut(s)	936
BspACI	CCGC	2 cut(s)	110, 840
BspANI	GGCC	2 cut(s)	405, 935
BspCNI	CTCAG	4 cut(s)	28, 306, 711, 778
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	254, 537, 797
BspT104I	TTCGAA	1 cut(s)	699
BspTNI	GGTCTC	1 cut(s)	1109
BsrDI	GCAATG	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	936
BssMI	GATC	5 cut(s)	259, 529, 802, 829, 1170
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	936
Bst4CI	ACNGT	2 cut(s)	912, 1255
Bst6I	CTCTTC	1 cut(s)	880
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	141, 523, 650
BstDEI	CTNAG	9 cut(s)	36, 104, 122, 185, 293, 719, 765, 1146, 1174
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	7 cut(s)	49, 81, 211, 403, 451, 520, 1204
BstKTI	GATC	5 cut(s)	262, 532, 805, 832, 1173
BstMAI	GTCTC	2 cut(s)	1109, 1171
BstMBI	GATC	5 cut(s)	259, 529, 802, 829, 1170
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 455, 496, 566, 766, 1208
BstNSI	RCATGY	3 cut(s)	143, 868, 1215
BstSLI	GKGCMC	1 cut(s)	1084
BstV1I	GCAGC	2 cut(s)	130, 973
BstV2I	GAAGAC	3 cut(s)	95, 1061, 1256
BsuI	GTATCC	1 cut(s)	1055
BsuRI	GGCC	2 cut(s)	405, 935
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	7 cut(s)	49, 81, 211, 403, 451, 520, 1204
BtsI	GCAGTG	2 cut(s)	370, 745
BtsIMutI	CAGTG	4 cut(s)	370, 488, 745, 908
Cac8I	GCNNGC	3 cut(s)	141, 523, 650
Cfr13I	GGNCC	2 cut(s)	874, 933
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	3 cut(s)	705, 774, 1243
CviAII	CATG	6 cut(s)	140, 455, 865, 937, 1076, 1212
CviQI	GTAC	3 cut(s)	705, 774, 1243
DdeI	CTNAG	9 cut(s)	36, 104, 122, 185, 293, 719, 765, 1146, 1174
DpnI	GATC	5 cut(s)	261, 531, 804, 831, 1172
DpnII	GATC	5 cut(s)	259, 529, 802, 829, 1170
DraI	TTTAAA	1 cut(s)	1137
DrdI	GACNNNNNNGTC	1 cut(s)	1258
DseDI	GACNNNNNNGTC	1 cut(s)	1258
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
Eco130I	CCWWGG	1 cut(s)	936
Eco31I	GGTCTC	1 cut(s)	1109
Eco47I	GGWCC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	174, 447
EcoT14I	CCWWGG	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	936
FaeI	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 479, 511
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	6 cut(s)	139, 454, 864, 936, 1075, 1211
FauI	CCCGC	2 cut(s)	103, 833
Fnu4HI	GCNGC	2 cut(s)	144, 987
FokI	GGATG	7 cut(s)	56, 68, 198, 410, 458, 527, 1211
Fsp4HI	GCNGC	2 cut(s)	144, 987
FspBI	CTAG	2 cut(s)	833, 1154
GluI	GCNGC	2 cut(s)	144, 987
GsaI	CCCAGC	1 cut(s)	773
HaeIII	GGCC	2 cut(s)	405, 935
HapII	CCGG	2 cut(s)	304, 1188
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	24, 488
HinfI	GANTC	6 cut(s)	192, 419, 478, 553, 905, 1231
HpaII	CCGG	2 cut(s)	304, 1188
HphI	GGTGA	1 cut(s)	1190
Hpy166II	GTNNAC	4 cut(s)	79, 607, 776, 1082
Hpy188I	TCNGA	4 cut(s)	154, 466, 794, 884
Hpy188III	TCNNGA	7 cut(s)	85, 833, 1039, 1112, 1154, 1168, 1196
Hpy8I	GTNNAC	4 cut(s)	79, 607, 776, 1082
HpyAV	CCTTC	3 cut(s)	283, 322, 708
HpyCH4III	ACNGT	2 cut(s)	912, 1255
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	7 cut(s)	218, 449, 499, 738, 760, 1082, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 455, 496, 566, 766, 1208
HpyF3I	CTNAG	9 cut(s)	36, 104, 122, 185, 293, 719, 765, 1146, 1174
HpySE526I	ACGT	1 cut(s)	703
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
Kzo9I	GATC	5 cut(s)	259, 529, 802, 829, 1170
LmnI	GCTCC	2 cut(s)	310, 922
Lsp1109I	GCAGC	2 cut(s)	130, 973
LweI	GCATC	5 cut(s)	34, 436, 508, 673, 1189
MaeI	CTAG	2 cut(s)	833, 1154
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	2 cut(s)	1178, 1214
MalI	GATC	5 cut(s)	261, 531, 804, 831, 1172
MboI	GATC	5 cut(s)	259, 529, 802, 829, 1170
MhlI	GDGCHC	1 cut(s)	1084
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	5 cut(s)	371, 504, 591, 660, 727
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	562
MmeI	TCCRAC	2 cut(s)	21, 220
MnlI	CCTC	6 cut(s)	194, 300, 436, 1135, 1213, 1221
Mox20I	TGGCCA	1 cut(s)	405
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	2 cut(s)	869, 1136
MslI	CAYNNNNRTG	2 cut(s)	825, 869
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	35, 769
MspI	CCGG	2 cut(s)	304, 1188
Mva1269I	GAATGC	2 cut(s)	74, 341
MwoI	GCNNNNNNNGC	6 cut(s)	32, 455, 496, 566, 766, 1208
NcoI	CCATGG	1 cut(s)	936
NdeII	GATC	5 cut(s)	259, 529, 802, 829, 1170
NlaIII	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
NlaIV	GGNNCC	1 cut(s)	351
NmuCI	GTSAC	1 cut(s)	1178
NspI	RCATGY	3 cut(s)	143, 868, 1215
NspV	TTCGAA	1 cut(s)	699
PaeI	GCATGC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	3 cut(s)	196, 529, 709
PctI	GAATGC	2 cut(s)	74, 341
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	5 cut(s)	192, 419, 478, 905, 1231
PflMI	CCANNNNNTGG	2 cut(s)	346, 359
PkrI	GCNGC	2 cut(s)	145, 988
PleI	GAGTC	1 cut(s)	561
PpsI	GAGTC	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	769
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	2 cut(s)	874, 933
PvuII	CAGCTG	2 cut(s)	35, 769
RsaI	GTAC	3 cut(s)	706, 775, 1244
RsaNI	GTAC	3 cut(s)	705, 774, 1243
RseI	CAYNNNNRTG	2 cut(s)	825, 869
SaqAI	TTAA	2 cut(s)	869, 1136
SatI	GCNGC	2 cut(s)	144, 987
Sau3AI	GATC	5 cut(s)	259, 529, 802, 829, 1170
Sau96I	GGNCC	2 cut(s)	874, 933
SchI	GAGTC	1 cut(s)	562
SduI	GDGCHC	1 cut(s)	1084
SfaNI	GCATC	5 cut(s)	34, 436, 508, 673, 1189
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	1 cut(s)	874
SmiMI	CAYNNNNRTG	2 cut(s)	825, 869
SmlI	CTYRAG	1 cut(s)	1112
SmoI	CTYRAG	1 cut(s)	1112
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	5 cut(s)	371, 504, 591, 660, 727
SsiI	CCGC	2 cut(s)	110, 840
SspMI	CTAG	2 cut(s)	833, 1154
StyI	CCWWGG	1 cut(s)	936
TaaI	ACNGT	2 cut(s)	912, 1255
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	6 cut(s)	276, 532, 699, 749, 1038, 1169
TasI	AATT	5 cut(s)	371, 504, 591, 660, 727
TfiI	GAWTC	5 cut(s)	192, 419, 478, 905, 1231
Tru1I	TTAA	2 cut(s)	869, 1136
Tru9I	TTAA	2 cut(s)	869, 1136
TscAI	CASTG	4 cut(s)	370, 488, 745, 915
TseFI	GTSAC	1 cut(s)	1178
TseI	GCWGC	2 cut(s)	143, 986
Tsp45I	GTSAC	1 cut(s)	1178
TspDTI	ATGAA	6 cut(s)	32, 294, 650, 690, 803, 984
TspGWI	ACGGA	2 cut(s)	410, 542
TspRI	CASTG	4 cut(s)	370, 488, 745, 915
Van91I	CCANNNNNTGG	2 cut(s)	346, 359
VneI	GTGCAC	1 cut(s)	1080
VpaK11BI	GGWCC	1 cut(s)	874
XapI	RAATTY	2 cut(s)	371, 727
XbaI	TCTAGA	2 cut(s)	832, 1153
XceI	RCATGY	3 cut(s)	143, 868, 1215
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	2 cut(s)	833, 1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.