Prupe.8G220800_v2.0.a1

TBC1 domain family member

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
20041459 .. 20047260
5802 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G220800.2

Sequence Viewer

Length: 1275 bp
ATGGCGTTGTTTTTTATGAGGAAAGCTTCGACAGCTGAGTTGGATGCTTTCTATCCAATTAGACCAGAATGCCAAGTTGATGTCCCGAAGACCCGGTTTAGGCTCAGGGCTGGGAAAACTCTTAGTGCAAGAAGATGGCATGCTGCCTTCTCTGAAGACGGTCACTTGGATATAGCCAAAGTACTAAGACGAATCCAACGAGGGGGTGTCCATCCTGCAATCAAAGGTGTAGTCTGGGAATTCTTGTTAGGTTGCTTTGATCCAAATAGCACATTTGATGACCGGAATCAGCTCAGGCAGGGCCGGAGGGAGCAGTACAGCAGATTGAAATCTGAATGCCAAAAGATGGTTCCAGTTATTGGCAGTGGAAAATTTCTTACAACACCAATCATCACAGATGATGGCCAACCAATAGAAGAATCAGCAAATGGCAATATAAGTAACAATGGAGGGGATGCAAACCATGCTACTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTACATCAAATTGGTTTGGATGTTGTTCGCACAGATCGATCACTTGTCTTTTATGAGAGTCAAGCTCATCAGGCAAAACTTTGGGACATTCTTTCAGTTTATGCTTGGGTGGACAATGATATTGGTTATGTTCAAGGAATGAATGATATATGTTCGCCAATGGTAATTCTTATTGACAATGAAGCAGATGCCTTTTGGTGTTTCGAACGTGCGATGCGAAGGCTGAGAGAAAATTTTAGGTGCAGTGCTAGTTCGATTGGGGTGCAATCTCAGCTGAGCACACTCTCCCAAGTAATCAAAACTATTGATCCTAAACTTCATCAGCACCTCGAGGATCTAGATGGTGGGGAGTATTTATTTGCATTTCGCATGCTGATGGTCCTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCACTGTATCTTTGGGAGCTGATGTGGGCCATGGAATACAACCCAAACATTTTCTCATCATATGAAGTGCCAAGTGGTGGCGCCACACCATCTAATGTAAATGACAAAGAACTAAAGCAATACGGCAAGTTTGAGAGAAACATTGTGAAGACAGGATACACAGAAAAACATGGTGCACTTTCCGTTTTTCTTGTTGCAAGTGTTCTTGAGACCAAGCAAAAGCAACTTTTAAAGGAGGCTACGGGTCTAGATGATGTTGTCAAGATCTTAGGTGACATAACTGGGAATCTGGATGCTAAAAAGGCATGTAATGAGGCATTGAGGATTCACAAAAAGTACCTCAAGACTGTGAAGCAATAG

Protein Analysis

425

Amino Acids

48.33

Weight (kDa)

8.52

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 833
AccB1I GGYRCC 1 cut(s) 995
AccB7I CCANNNNNTGG 3 cut(s) 346, 359, 992
AclWI GGATC 3 cut(s) 254, 806, 846
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 3 cut(s) 239, 371, 736
AcuI CTGAAG 2 cut(s) 174, 456
AcyI GRCGYC 1 cut(s) 996
AfaI GTAC 3 cut(s) 183, 317, 1253
AfiI CCNNNNNNNGG 5 cut(s) 99, 202, 346, 359, 992
AgsI TTSAA 2 cut(s) 328, 638
AjuI GAANNNNNNNTTGG 2 cut(s) 333, 365
AluBI AGCT 7 cut(s) 26, 35, 292, 499, 569, 778, 934
AluI AGCT 7 cut(s) 26, 35, 292, 499, 569, 778, 934
Alw21I GWGCWC 2 cut(s) 785, 1093
Alw26I GTCTC 1 cut(s) 1118
Alw44I GTGCAC 1 cut(s) 1089
AlwI GGATC 3 cut(s) 254, 806, 846
Ama87I CYCGRG 1 cut(s) 833
AoxI GGCC 3 cut(s) 301, 403, 942
ApaLI GTGCAC 1 cut(s) 1089
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 3 cut(s) 239, 371, 736
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
Asp700I GAANNNNTTC 1 cut(s) 500
AspLEI GCGC 1 cut(s) 998
AspS9I GGNCC 3 cut(s) 301, 883, 942
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 1199
AsuII TTCGAA 1 cut(s) 708
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 1 cut(s) 883
BaeGI GKGCMC 1 cut(s) 1093
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 995
BarI GAAGNNNNNNTAC 2 cut(s) 1055, 1087
BbsI GAAGAC 3 cut(s) 95, 162, 1070
Bbv12I GWGCWC 2 cut(s) 785, 1093
BbvI GCAGC 1 cut(s) 130
BccI CCATC 7 cut(s) 129, 219, 340, 395, 839, 874, 1012
BceAI ACGGC 1 cut(s) 1054
BcgI CGANNNNNNTGC 2 cut(s) 748, 782
BciVI GTATCC 1 cut(s) 1064
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 1 cut(s) 1118
BfaI CTAG 3 cut(s) 753, 842, 1163
BfoI RGCGCY 1 cut(s) 999
BfuI GTATCC 1 cut(s) 1064
BglII AGATCT 1 cut(s) 1179
BisI GCNGC 1 cut(s) 144
BlpI GCTNAGC 1 cut(s) 779
BlsI GCNGC 1 cut(s) 145
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 883
BmeT110I CYCGRG 1 cut(s) 833
BmgT120I GGNCC 3 cut(s) 301, 883, 942
BmiI GGNNCC 2 cut(s) 351, 997
BmrFI CCNGG 1 cut(s) 94
BmrI ACTGGG 1 cut(s) 1206
BmsI GCATC 5 cut(s) 34, 445, 682, 708, 1198
BmuI ACTGGG 1 cut(s) 1206
BpiI GAAGAC 3 cut(s) 95, 162, 1070
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu10I CCTNAGC 2 cut(s) 104, 293
Bpu1102I GCTNAGC 1 cut(s) 779
Bpu14I TTCGAA 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 1142, 1241
BpuMI CCSGG 1 cut(s) 94
Bsa29I ATCGAT 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 996
BsaI GGTCTC 1 cut(s) 1118
BsaJI CCNNGG 1 cut(s) 945
BsaWI WCCGGW 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 923, 953
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 202, 346, 359, 992
Bse1I ACTGG 2 cut(s) 353, 1201
Bse8I GATNNNNATC 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 541
BseDI CCNNGG 1 cut(s) 945
BseGI GGATG 5 cut(s) 49, 211, 460, 529, 1213
BseJI GATNNNNATC 1 cut(s) 328
BseLI CCNNNNNNNGG 5 cut(s) 99, 202, 346, 359, 992
BseMII CTCAG 6 cut(s) 27, 118, 307, 719, 770, 788
BseNI ACTGG 2 cut(s) 353, 1201
BseSI GKGCMC 1 cut(s) 1093
BseXI GCAGC 1 cut(s) 130
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 766
BshFI GGCC 3 cut(s) 303, 405, 944
BshNI GGYRCC 1 cut(s) 995
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 785, 1093
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 3 cut(s) 94, 283, 304
BslFI GGGAC 2 cut(s) 68, 602
BslI CCNNNNNNNGG 5 cut(s) 99, 202, 346, 359, 992
BsmAI GTCTC 1 cut(s) 1118
BsmFI GGGAC 2 cut(s) 68, 602
BsmI GAATGC 2 cut(s) 74, 341
BsnI GGCC 3 cut(s) 303, 405, 944
Bso31I GGTCTC 1 cut(s) 1118
BsoBI CYCGRG 1 cut(s) 833
Bsp119I TTCGAA 1 cut(s) 708
Bsp1286I GDGCHC 2 cut(s) 785, 1093
Bsp143I GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
Bsp1720I GCTNAGC 1 cut(s) 779
Bsp19I CCATGG 1 cut(s) 945
BspANI GGCC 3 cut(s) 303, 405, 944
BspCNI CTCAG 6 cut(s) 28, 117, 306, 720, 771, 787
BspDI ATCGAT 1 cut(s) 541
BspLI GGNNCC 2 cut(s) 351, 997
BspPI GGATC 3 cut(s) 254, 806, 846
BspT104I TTCGAA 1 cut(s) 708
BspT107I GGYRCC 1 cut(s) 995
BspTNI GGTCTC 1 cut(s) 1118
BsrI ACTGG 2 cut(s) 353, 1201
BssECI CCNNGG 1 cut(s) 945
BssMI GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
BssNI GRCGYC 1 cut(s) 996
BssT1I CCWWGG 1 cut(s) 945
Bst4CI ACNGT 3 cut(s) 161, 921, 1264
Bst6I CTCTTC 1 cut(s) 889
BstACI GRCGYC 1 cut(s) 996
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBI TTCGAA 1 cut(s) 708
BstC8I GCNNGC 2 cut(s) 141, 875
BstDEI CTNAG 9 cut(s) 36, 104, 122, 185, 293, 728, 774, 779, 1183
BstDSI CCRYGG 1 cut(s) 945
BstF5I GGATG 5 cut(s) 49, 211, 460, 529, 1213
BstH2I RGCGCY 1 cut(s) 999
BstHHI GCGC 1 cut(s) 998
BstKTI GATC 6 cut(s) 262, 541, 545, 814, 841, 1182
BstMAI GTCTC 1 cut(s) 1118
BstMBI GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
BstMWI GCNNNNNNNGC 5 cut(s) 32, 464, 575, 775, 1217
BstNSI RCATGY 3 cut(s) 143, 877, 1224
BstSCI CCNGG 1 cut(s) 92
BstSLI GKGCMC 1 cut(s) 1093
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 3 cut(s) 95, 162, 1070
BstX2I RGATCY 2 cut(s) 838, 1179
BstYI RGATCY 2 cut(s) 838, 1179
Bsu15I ATCGAT 1 cut(s) 541
BsuI GTATCC 1 cut(s) 1064
BsuRI GGCC 3 cut(s) 303, 405, 944
BsuTUI ATCGAT 1 cut(s) 541
BtgI CCRYGG 1 cut(s) 945
BtgZI GCGATG 1 cut(s) 731
BtsCI GGATG 5 cut(s) 49, 211, 460, 529, 1213
BtsI GCAGTG 2 cut(s) 370, 754
BtsIMutI CAGTG 4 cut(s) 370, 497, 754, 917
Cac8I GCNNGC 2 cut(s) 141, 875
CfoI GCGC 1 cut(s) 998
Cfr13I GGNCC 3 cut(s) 301, 883, 942
ClaI ATCGAT 1 cut(s) 541
Csp6I GTAC 3 cut(s) 182, 316, 1252
CviAII CATG 6 cut(s) 140, 464, 874, 946, 1085, 1221
CviQI GTAC 3 cut(s) 182, 316, 1252
DdeI CTNAG 9 cut(s) 36, 104, 122, 185, 293, 728, 774, 779, 1183
DinI GGCGCC 1 cut(s) 997
DpnI GATC 6 cut(s) 261, 540, 544, 813, 840, 1181
DpnII GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
DraI TTTAAA 1 cut(s) 1146
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 889
EarI CTCTTC 1 cut(s) 889
Eco130I CCWWGG 1 cut(s) 945
Eco31I GGTCTC 1 cut(s) 1118
Eco47I GGWCC 1 cut(s) 883
Eco57I CTGAAG 2 cut(s) 174, 456
Eco88I CYCGRG 1 cut(s) 833
EcoRI GAATTC 1 cut(s) 239
EcoT14I CCWWGG 1 cut(s) 945
EgeI GGCGCC 1 cut(s) 997
EheI GGCGCC 1 cut(s) 997
ErhI CCWWGG 1 cut(s) 945
FaeI CATG 6 cut(s) 143, 467, 877, 949, 1088, 1224
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 2 cut(s) 68, 602
FatI CATG 6 cut(s) 139, 463, 873, 945, 1084, 1220
FauNDI CATATG 1 cut(s) 976
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 5 cut(s) 56, 198, 467, 536, 1220
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 3 cut(s) 753, 842, 1163
GlaI GCGC 1 cut(s) 997
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 999
HaeIII GGCC 3 cut(s) 303, 405, 944
HapII CCGG 3 cut(s) 94, 283, 304
HhaI GCGC 1 cut(s) 998
Hin1I GRCGYC 1 cut(s) 996
Hin1II CATG 6 cut(s) 143, 467, 877, 949, 1088, 1224
Hin6I GCGC 1 cut(s) 996
HinP1I GCGC 1 cut(s) 996
HindIII AAGCTT 2 cut(s) 24, 497
HinfI GANTC 8 cut(s) 192, 286, 419, 487, 562, 914, 1201, 1240
HpaII CCGG 3 cut(s) 94, 283, 304
HphI GGTGA 1 cut(s) 1199
Hpy166II GTNNAC 2 cut(s) 616, 1091
Hpy188I TCNGA 4 cut(s) 154, 334, 475, 893
Hpy188III TCNNGA 7 cut(s) 85, 842, 1121, 1163, 1177, 1205, 1258
Hpy8I GTNNAC 2 cut(s) 616, 1091
HpyAV CCTTC 2 cut(s) 157, 717
HpyCH4III ACNGT 3 cut(s) 161, 921, 1264
HpyCH4IV ACGT 1 cut(s) 712
HpyCH4V TGCA 8 cut(s) 128, 218, 458, 747, 769, 866, 1091, 1112
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 464, 575, 775, 1217
HpyF3I CTNAG 9 cut(s) 36, 104, 122, 185, 293, 728, 774, 779, 1183
HpySE526I ACGT 1 cut(s) 712
Hsp92I GRCGYC 1 cut(s) 996
Hsp92II CATG 6 cut(s) 143, 467, 877, 949, 1088, 1224
HspAI GCGC 1 cut(s) 996
KasI GGCGCC 1 cut(s) 995
Kzo9I GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
LmnI GCTCC 2 cut(s) 310, 931
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 5 cut(s) 34, 445, 682, 708, 1198
MaeI CTAG 3 cut(s) 753, 842, 1163
MaeII ACGT 1 cut(s) 712
MaeIII GTNAC 3 cut(s) 161, 440, 1187
MalI GATC 6 cut(s) 261, 540, 544, 813, 840, 1181
MboI GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
MboII GAAGA 6 cut(s) 100, 144, 167, 428, 906, 1075
MflI RGATCY 2 cut(s) 838, 1179
MhlI GDGCHC 2 cut(s) 785, 1093
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 6 cut(s) 57, 239, 371, 513, 669, 736
MluNI TGGCCA 1 cut(s) 405
Mly113I GGCGCC 1 cut(s) 996
MlyI GAGTC 1 cut(s) 571
MmeI TCCRAC 2 cut(s) 21, 220
Mox20I TGGCCA 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 500
MscI TGGCCA 1 cut(s) 405
MseI TTAA 1 cut(s) 1145
MslI CAYNNNNRTG 1 cut(s) 878
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 2 cut(s) 35, 778
MspI CCGG 3 cut(s) 94, 283, 304
MspR9I CCNGG 1 cut(s) 94
Mva1269I GAATGC 2 cut(s) 74, 341
MwoI GCNNNNNNNGC 5 cut(s) 32, 464, 575, 775, 1217
NarI GGCGCC 1 cut(s) 996
NciI CCSGG 1 cut(s) 94
NcoI CCATGG 1 cut(s) 945
NdeI CATATG 1 cut(s) 976
NdeII GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
NlaIII CATG 6 cut(s) 143, 467, 877, 949, 1088, 1224
NlaIV GGNNCC 2 cut(s) 351, 997
NmuCI GTSAC 2 cut(s) 161, 1187
NspI RCATGY 3 cut(s) 143, 877, 1224
NspV TTCGAA 1 cut(s) 708
PaeI GCATGC 2 cut(s) 143, 877
PaeR7I CTCGAG 1 cut(s) 833
PcsI WCGNNNNNNNCGW 3 cut(s) 196, 538, 718
PctI GAATGC 2 cut(s) 74, 341
PdmI GAANNNNTTC 1 cut(s) 500
PfeI GAWTC 7 cut(s) 192, 286, 419, 487, 914, 1201, 1240
PflMI CCANNNNNTGG 3 cut(s) 346, 359, 992
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 570
PluTI GGCGCC 1 cut(s) 999
PpsI GAGTC 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 110
PspN4I GGNNCC 2 cut(s) 351, 997
PspPI GGNCC 3 cut(s) 301, 883, 942
PspXI VCTCGAGB 1 cut(s) 833
PsuI RGATCY 2 cut(s) 838, 1179
PvuII CAGCTG 2 cut(s) 35, 778
RsaI GTAC 3 cut(s) 183, 317, 1253
RsaNI GTAC 3 cut(s) 182, 316, 1252
RseI CAYNNNNRTG 1 cut(s) 878
SaqAI TTAA 1 cut(s) 1145
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 6 cut(s) 259, 538, 542, 811, 838, 1179
Sau96I GGNCC 3 cut(s) 301, 883, 942
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 1 cut(s) 571
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 2 cut(s) 785, 1093
SfaNI GCATC 5 cut(s) 34, 445, 682, 708, 1198
SfoI GGCGCC 1 cut(s) 997
Sfr274I CTCGAG 1 cut(s) 833
SfuI TTCGAA 1 cut(s) 708
SinI GGWCC 1 cut(s) 883
SlaI CTCGAG 1 cut(s) 833
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 3 cut(s) 833, 1121, 1256
SmoI CTYRAG 3 cut(s) 833, 1121, 1256
SphI GCATGC 2 cut(s) 143, 877
Sse9I AATT 6 cut(s) 57, 239, 371, 513, 669, 736
SspDI GGCGCC 1 cut(s) 995
SspMI CTAG 3 cut(s) 753, 842, 1163
StyD4I CCNGG 1 cut(s) 92
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 3 cut(s) 161, 921, 1264
TaiI ACGT 1 cut(s) 715
TaqI TCGA 5 cut(s) 29, 541, 708, 758, 834
TasI AATT 6 cut(s) 57, 239, 371, 513, 669, 736
TatI WGTACW 2 cut(s) 181, 315
TfiI GAWTC 7 cut(s) 192, 286, 419, 487, 914, 1201, 1240
Tru1I TTAA 1 cut(s) 1145
Tru9I TTAA 1 cut(s) 1145
TscAI CASTG 4 cut(s) 370, 497, 754, 924
TseFI GTSAC 2 cut(s) 161, 1187
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 161, 1187
TspDTI ATGAA 4 cut(s) 659, 699, 812, 993
TspGWI ACGGA 1 cut(s) 1087
TspRI CASTG 4 cut(s) 370, 497, 754, 924
Van91I CCANNNNNTGG 3 cut(s) 346, 359, 992
VneI GTGCAC 1 cut(s) 1089
VpaK11BI GGWCC 1 cut(s) 883
XapI RAATTY 3 cut(s) 239, 371, 736
XbaI TCTAGA 2 cut(s) 841, 1162
XceI RCATGY 3 cut(s) 143, 877, 1224
XhoI CTCGAG 1 cut(s) 833
XmnI GAANNNNTTC 1 cut(s) 500
XspI CTAG 3 cut(s) 753, 842, 1163
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.