Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Reverse (-)

49960401 .. 49966004

Gene Structure 5604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG297900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAGTTTTTTATGAAGAAAGCTTCCACAGCTGAGTTGGATGCTTTCTATCCAGTTAGAGAGGAATGCCGAGTTGAAGTCCCCAAGACCCGATTTAGGCTGAGGGCTGGGAAAACTCTTAGTGCAAGAAGATGGCATGCTGCCTTCTCTGAAGATGGTCATTTGGATATAGCGTCAGTGCTTAGACGAATCCAACGAGGGGGCATCCATCCTGCAATTAAAGGTGTAGTCTGGGAATTCTTGTTAGGTTGTTTTGATCCAAATAGCACCTTTGATGAACGGAATGATCTCAGGCAGCAGCGAAGGGAGATGTATGTCAGATTGAAAGCTGAATGCAATAAGATGGTTCCAGTTATTGGTAGTGGAAAATTTATTACAACACCGCTGGTCACGGATGATGGCGATCCGATAGATGGAGCACCAAATGGAGCAAGGCATGATGTTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTGCATCAAATTGGTTTGGACGTTGTTCGCACTGATCGGACACTTGTATTTTATGAGAGTGAAACTAATCAGGCAAAACTTTGGGAAATTCTTTCAGTTTATGCTTGGATGGACAATGACATTGGTTATGTTCAAGGAATGAATGATATATGCTCGCCAATTGTCATTCTTATTGAAAATCACGCAGATGCATTTTGGTGTTTCGAACGTGCAATGCGAAAGCTGAGAGAAAATTTTAGGTGCACTTCTACTTCGATGGGGGTGCAATCTCAGCTGGCTACGCTCTCCCAAGTAATCAGAACTATTGATCCTAAACTTCATCAACACCTCGAGGAGCTGGATGGTGGGGAGTATTTATTTGCATTCCGCATGCTGATGGTACTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCACTGTATCTTTGGGAGCTGATGTGGGCCATGGAATACAACCCAAACATATTCTCATCTTACGAAACATCAAGCGCTGGTACTACACCACCTAATGCAAGTGACAAAGAACTAAAGGCATTTGGCAAGTTTGAGAGAAATAATGTCAAAACTGGATACGCAGAACAACATGGTGCACTTTCTGTATTTCTTGTTGCCAGTGTTCTTGAGACCAAAAACAAGCTACTTTTAAAAAATGCCAAGGGTCTGGACGATGTTGTCAATATCTTAGGCGACATAACAGGGAATCTGGATGCTAGAAAGGCATGTAATGAGGCATTGAAGATTCACAAAAAGTACCTGAAGTTGCACTTGCAGAATGTGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

419

Amino Acids

48.0

Weight (kDa)

8.06

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	150 - 309	6.7e-36	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	184 - 304	1.1e-09	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1145
AbsI	CCTCGAGG	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	2 cut(s)	383, 844
AclWI	GGATC	3 cut(s)	251, 398, 779
AcsI	RAATTY	4 cut(s)	236, 368, 564, 709
AcuI	CTGAAG	2 cut(s)	171, 1250
AfaI	GTAC	3 cut(s)	858, 970, 1226
AfeI	AGCGCT	1 cut(s)	964
AfiI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
AgsI	TTSAA	5 cut(s)	77, 325, 611, 653, 1210
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	9 cut(s)	23, 32, 329, 472, 700, 751, 814, 907, 1111
AluI	AGCT	9 cut(s)	23, 32, 329, 472, 700, 751, 814, 907, 1111
Alw21I	GWGCWC	3 cut(s)	421, 722, 1066
Alw26I	GTCTC	1 cut(s)	1091
Alw44I	GTGCAC	2 cut(s)	718, 1062
AlwI	GGATC	3 cut(s)	251, 398, 779
Ama87I	CYCGRG	1 cut(s)	806
Aor51HI	AGCGCT	1 cut(s)	964
AoxI	GGCC	1 cut(s)	915
ApaLI	GTGCAC	2 cut(s)	718, 1062
ApeKI	GCWGC	3 cut(s)	140, 295, 298
ApoI	RAATTY	4 cut(s)	236, 368, 564, 709
Asp700I	GAANNNNTTC	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	965
AspS9I	GGNCC	1 cut(s)	915
AsuII	TTCGAA	1 cut(s)	681
AvaI	CYCGRG	1 cut(s)	806
BaeGI	GKGCMC	2 cut(s)	722, 1066
Bbv12I	GWGCWC	3 cut(s)	421, 722, 1066
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	127, 307, 310
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BciVI	GTATCC	1 cut(s)	1037
BcoDI	GTCTC	1 cut(s)	1091
BfaI	CTAG	1 cut(s)	1185
BfoI	RGCGCY	1 cut(s)	966
BfuI	GTATCC	1 cut(s)	1037
BisI	GCNGC	3 cut(s)	141, 296, 299
BlsI	GCNGC	3 cut(s)	142, 297, 300
BmeT110I	CYCGRG	1 cut(s)	806
BmgT120I	GGNCC	1 cut(s)	915
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	5 cut(s)	31, 213, 490, 655, 1171
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	1115
BsaBI	GATNNNNATC	1 cut(s)	402
BsaI	GGTCTC	1 cut(s)	1091
BsaJI	CCNNGG	2 cut(s)	918, 1128
BsaXI	ACNNNNNCTCC	2 cut(s)	896, 926
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
Bse1I	ACTGG	4 cut(s)	53, 350, 1045, 1086
Bse3DI	GCAATG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	2 cut(s)	918, 1128
BseGI	GGATG	7 cut(s)	46, 204, 208, 400, 591, 823, 1186
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
BseMI	GCAATG	1 cut(s)	696
BseMII	CTCAG	5 cut(s)	24, 92, 304, 692, 761
BseNI	ACTGG	4 cut(s)	53, 350, 1045, 1086
BseRI	GAGGAG	1 cut(s)	824
BseSI	GKGCMC	2 cut(s)	722, 1066
BseXI	GCAGC	3 cut(s)	127, 307, 310
BseYI	CCCAGC	1 cut(s)	107
BshFI	GGCC	1 cut(s)	917
BsiHKAI	GWGCWC	3 cut(s)	421, 722, 1066
BsiHKCI	CYCGRG	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
BsmAI	GTCTC	1 cut(s)	1091
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	3 cut(s)	71, 338, 839
BsnI	GGCC	1 cut(s)	917
Bso31I	GGTCTC	1 cut(s)	1091
BsoBI	CYCGRG	1 cut(s)	806
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	3 cut(s)	421, 722, 1066
Bsp143I	GATC	5 cut(s)	256, 286, 403, 511, 784
Bsp19I	CCATGG	1 cut(s)	918
BspACI	CCGC	2 cut(s)	383, 844
BspANI	GGCC	1 cut(s)	917
BspCNI	CTCAG	5 cut(s)	25, 93, 303, 693, 760
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	251, 398, 779
BspT104I	TTCGAA	1 cut(s)	681
BspTNI	GGTCTC	1 cut(s)	1091
BsrDI	GCAATG	1 cut(s)	696
BsrI	ACTGG	4 cut(s)	53, 350, 1045, 1086
BssECI	CCNNGG	2 cut(s)	918, 1128
BssMI	GATC	5 cut(s)	256, 286, 403, 511, 784
BssT1I	CCWWGG	2 cut(s)	918, 1128
Bst4CI	ACNGT	2 cut(s)	861, 894
Bst6I	CTCTTC	1 cut(s)	862
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	4 cut(s)	138, 632, 753, 848
BstDEI	CTNAG	8 cut(s)	33, 101, 119, 182, 290, 701, 747, 1156
BstDSI	CCRYGG	1 cut(s)	918
BstF5I	GGATG	7 cut(s)	46, 204, 208, 400, 591, 823, 1186
BstH2I	RGCGCY	1 cut(s)	966
BstHHI	GCGC	1 cut(s)	965
BstKTI	GATC	5 cut(s)	259, 289, 406, 514, 787
BstMAI	GTCTC	1 cut(s)	1091
BstMBI	GATC	5 cut(s)	256, 286, 403, 511, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 478, 748, 757, 1190
BstNSI	RCATGY	3 cut(s)	140, 850, 1197
BstSLI	GKGCMC	2 cut(s)	722, 1066
BstV1I	GCAGC	3 cut(s)	127, 307, 310
BstXI	CCANNNNNNTGG	1 cut(s)	1135
BsuI	GTATCC	1 cut(s)	1037
BsuRI	GGCC	1 cut(s)	917
BtgI	CCRYGG	1 cut(s)	918
BtsCI	GGATG	7 cut(s)	46, 204, 208, 400, 591, 823, 1186
BtsIMutI	CAGTG	5 cut(s)	183, 470, 507, 890, 1093
Cac8I	GCNNGC	4 cut(s)	138, 632, 753, 848
CfoI	GCGC	1 cut(s)	965
Cfr13I	GGNCC	1 cut(s)	915
CseI	GACGC	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	857, 969, 1225
CviAII	CATG	6 cut(s)	137, 437, 847, 919, 1058, 1194
CviQI	GTAC	3 cut(s)	857, 969, 1225
DdeI	CTNAG	8 cut(s)	33, 101, 119, 182, 290, 701, 747, 1156
DpnI	GATC	5 cut(s)	258, 288, 405, 513, 786
DpnII	GATC	5 cut(s)	256, 286, 403, 511, 784
DraI	TTTAAA	1 cut(s)	1119
DrdI	GACNNNNNNGTC	1 cut(s)	1145
DseDI	GACNNNNNNGTC	1 cut(s)	1145
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco130I	CCWWGG	2 cut(s)	918, 1128
Eco31I	GGTCTC	1 cut(s)	1091
Eco47III	AGCGCT	1 cut(s)	964
Eco57I	CTGAAG	2 cut(s)	171, 1250
Eco88I	CYCGRG	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	918, 1128
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	2 cut(s)	918, 1128
FaeI	CATG	6 cut(s)	140, 440, 850, 922, 1061, 1197
FalI	AAGNNNNNCTT	4 cut(s)	461, 493, 1223, 1255
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	6 cut(s)	136, 436, 846, 918, 1057, 1193
Fnu4HI	GCNGC	3 cut(s)	141, 296, 299
FokI	GGATG	7 cut(s)	53, 191, 195, 407, 598, 830, 1193
Fsp4HI	GCNGC	3 cut(s)	141, 296, 299
FspBI	CTAG	1 cut(s)	1185
GlaI	GCGC	1 cut(s)	964
GluI	GCNGC	3 cut(s)	141, 296, 299
GsaI	CCCAGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	966
HaeIII	GGCC	1 cut(s)	917
HgaI	GACGC	1 cut(s)	162
HhaI	GCGC	1 cut(s)	965
Hin1II	CATG	6 cut(s)	140, 440, 850, 922, 1061, 1197
Hin6I	GCGC	1 cut(s)	963
HinP1I	GCGC	1 cut(s)	963
HindIII	AAGCTT	2 cut(s)	21, 470
HinfI	GANTC	5 cut(s)	189, 460, 887, 1174, 1213
Hpy166II	GTNNAC	2 cut(s)	720, 1064
Hpy188I	TCNGA	7 cut(s)	151, 320, 408, 448, 516, 776, 866
Hpy188III	TCNNGA	3 cut(s)	1094, 1136, 1178
Hpy8I	GTNNAC	2 cut(s)	720, 1064
HpyAV	CCTTC	2 cut(s)	154, 297
HpyCH4III	ACNGT	2 cut(s)	861, 894
HpyCH4IV	ACGT	2 cut(s)	498, 685
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 478, 748, 757, 1190
HpyF3I	CTNAG	8 cut(s)	33, 101, 119, 182, 290, 701, 747, 1156
HpySE526I	ACGT	2 cut(s)	498, 685
Hsp92II	CATG	6 cut(s)	140, 440, 850, 922, 1061, 1197
HspAI	GCGC	1 cut(s)	963
Kzo9I	GATC	5 cut(s)	256, 286, 403, 511, 784
LmnI	GCTCC	4 cut(s)	416, 428, 811, 904
Lsp1109I	GCAGC	3 cut(s)	127, 307, 310
LweI	GCATC	5 cut(s)	31, 213, 490, 655, 1171
MaeI	CTAG	1 cut(s)	1185
MaeII	ACGT	2 cut(s)	498, 685
MaeIII	GTNAC	2 cut(s)	388, 989
MalI	GATC	5 cut(s)	258, 288, 405, 513, 786
MboI	GATC	5 cut(s)	256, 286, 403, 511, 784
MboII	GAAGA	5 cut(s)	28, 141, 164, 879, 1222
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	3 cut(s)	421, 722, 1066
MluCI	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
MmeI	TCCRAC	2 cut(s)	18, 217
MnlI	CCTC	6 cut(s)	55, 96, 191, 802, 815, 1195
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	2 cut(s)	219, 1118
MslI	CAYNNNNRTG	3 cut(s)	663, 673, 851
MspA1I	CMGCKG	3 cut(s)	32, 385, 751
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	3 cut(s)	71, 338, 839
MwoI	GCNNNNNNNGC	5 cut(s)	29, 478, 748, 757, 1190
NcoI	CCATGG	1 cut(s)	918
NdeII	GATC	5 cut(s)	256, 286, 403, 511, 784
NlaIII	CATG	6 cut(s)	140, 440, 850, 922, 1061, 1197
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	388, 989
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	3 cut(s)	140, 850, 1197
NspV	TTCGAA	1 cut(s)	681
PaeI	GCATGC	2 cut(s)	140, 850
PaeR7I	CTCGAG	1 cut(s)	806
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 691
PctI	GAATGC	3 cut(s)	71, 338, 839
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	5 cut(s)	189, 460, 887, 1174, 1213
PflMI	CCANNNNNTGG	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	142, 297, 300
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	1 cut(s)	915
PspXI	VCTCGAGB	1 cut(s)	806
PvuII	CAGCTG	2 cut(s)	32, 751
RsaI	GTAC	3 cut(s)	858, 970, 1226
RsaNI	GTAC	3 cut(s)	857, 969, 1225
RseI	CAYNNNNRTG	3 cut(s)	663, 673, 851
SaqAI	TTAA	2 cut(s)	219, 1118
SatI	GCNGC	3 cut(s)	141, 296, 299
Sau3AI	GATC	5 cut(s)	256, 286, 403, 511, 784
Sau96I	GGNCC	1 cut(s)	915
SduI	GDGCHC	3 cut(s)	421, 722, 1066
SfaNI	GCATC	5 cut(s)	31, 213, 490, 655, 1171
Sfr274I	CTCGAG	1 cut(s)	806
SfuI	TTCGAA	1 cut(s)	681
SlaI	CTCGAG	1 cut(s)	806
SmiMI	CAYNNNNRTG	3 cut(s)	663, 673, 851
SmlI	CTYRAG	2 cut(s)	806, 1094
SmoI	CTYRAG	2 cut(s)	806, 1094
SphI	GCATGC	2 cut(s)	140, 850
Sse9I	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
SsiI	CCGC	2 cut(s)	383, 844
SspMI	CTAG	1 cut(s)	1185
StyI	CCWWGG	2 cut(s)	918, 1128
TaaI	ACNGT	2 cut(s)	861, 894
TaiI	ACGT	2 cut(s)	501, 688
TaqI	TCGA	3 cut(s)	681, 731, 807
TasI	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
TfiI	GAWTC	5 cut(s)	189, 460, 887, 1174, 1213
Tru1I	TTAA	2 cut(s)	219, 1118
Tru9I	TTAA	2 cut(s)	219, 1118
TscAI	CASTG	5 cut(s)	183, 470, 514, 897, 1093
TseFI	GTSAC	2 cut(s)	388, 989
TseI	GCWGC	3 cut(s)	140, 295, 298
Tsp45I	GTSAC	2 cut(s)	388, 989
TspDTI	ATGAA	4 cut(s)	29, 291, 632, 785
TspGWI	ACGGA	2 cut(s)	295, 407
TspRI	CASTG	5 cut(s)	183, 470, 514, 897, 1093
Van91I	CCANNNNNTGG	1 cut(s)	356
VneI	GTGCAC	2 cut(s)	718, 1062
XapI	RAATTY	4 cut(s)	236, 368, 564, 709
XceI	RCATGY	3 cut(s)	140, 850, 1197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XhoI	CTCGAG	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	1185
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.