Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Reverse (-)

53566334 .. 53571791

Gene Structure 5458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG306000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGTTGGTAATGAAATGTGAAGATTTGGATTTGGATACAGAGAGAAAGATTGAGATTTTGGCCAATGAAGGATCGAAAGTGGGTGAATTGATTGTTGGGGGCTTTGGTTGTGAGGGAAGAATGGAGTTTTTTATGAAGAAAGCTTCCACAGCTGAGTTGGATGCTTTCTATCCAGTTAGAGAGGAATGCCGAGTTGAAGTCCCCAAGACCCGATTTAGGCTGAGGGCTGGGAAAACTCTTAGTGCAAGAAGATGGCATGCTGCCTTCTCTGAAGATGGTCATTTGGATATAGCGTCAGTGCTTAGACGAATCCAACGAGGGGGCATCCATCCTGCAATTAAAGGTGTAGTCTGGGAATTCTTGTTAGGTTGTTTTGATCCAAATAGCACCTTTGATGAACGGAATGATCTCAGGCAGCAGCGAAGGGAGATGTATGTCAGATTGAAAGCTGACTGCAATAAGATGGTTCCAGTTATTGGTAGTGGAAAATTTATTACAACACCGCTGGTCACGGATGATGGCGATCCGATAGATGGAGCACCAAATGGAGCAAGGCATGATGTTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTGCATCAAATTGGTTTGGACGTTGTTCGCACTGATCGGACACTTGTATTTTATGAGAGTGAAACTAATCAGGCAAAACTTTGGGAAATTCTTTCAGTTTATGCTTGGATGGACAATGACATTGGTTATGTTCAAGGAATGAATGATATATGCTCGCCAATTGTCATTCTTATTGAAAATCACGCAGATGCATTTTGGTGTTTCGAACGTGCGATGCGAAAGCTGAGAGAAAATTTTAGGTGCACTTCTACTTCGATGGGGGTGCAATCTCAGCTGGCTACGCTCTCCCAAGTAATCAGAACTATTGATCCTAAACTTCATCAACACCTTGAGGAACTGGATGGTGGGGAGTATTTATTTGCATTCCGCATGCTGATGGTACTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCACTGTATCTTTGGGAGCTGATGTGGGCCATGGAATACAACCCAAACATATTCTCATCTTACGAAACGTCAAGCGCTGGTACTACACCACCTAATGCAAGTGACAAAGAACTAAAGGCATTTGGCAAGTTTGAGAGAAATAATGTCAAAACTGGATACACAGAACAACATGGTGCACTTTCCGTATTTCTTGTTGCCAGTGTTCTTGAGACCAAAAACAAGCAACTTTTAAAAAATGCCAAGGGTCTGGACGATGTTGTCAATATCTTAGGCGACATAACGGGGAATCTGGATGCTAGAAAGGCATGTAATGAGGCATTGAAGATTCACAAAAAGTACCTGAAGAATGTGAAGTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

455

Amino Acids

51.89

Weight (kDa)

6.58

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	190 - 349	8e-36	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	224 - 344	1.3e-09	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1265
AccB7I	CCANNNNNTGG	1 cut(s)	476
AciI	CCGC	2 cut(s)	503, 964
AclWI	GGATC	4 cut(s)	79, 371, 518, 899
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	4 cut(s)	356, 488, 684, 829
AcuI	CTGAAG	1 cut(s)	291
AfaI	GTAC	3 cut(s)	978, 1090, 1346
AfeI	AGCGCT	1 cut(s)	1084
AfiI	CCNNNNNNNGG	4 cut(s)	216, 319, 476, 533
AgsI	TTSAA	5 cut(s)	197, 445, 731, 773, 1330
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AloI	GAACNNNNNNTCC	2 cut(s)	889, 921
AluBI	AGCT	7 cut(s)	143, 152, 449, 592, 820, 871, 1027
AluI	AGCT	7 cut(s)	143, 152, 449, 592, 820, 871, 1027
Alw21I	GWGCWC	3 cut(s)	541, 842, 1186
Alw26I	GTCTC	1 cut(s)	1211
Alw44I	GTGCAC	2 cut(s)	838, 1182
AlwI	GGATC	4 cut(s)	79, 371, 518, 899
Aor51HI	AGCGCT	1 cut(s)	1084
AoxI	GGCC	2 cut(s)	60, 1035
ApaLI	GTGCAC	2 cut(s)	838, 1182
ApeKI	GCWGC	3 cut(s)	260, 415, 418
ApoI	RAATTY	4 cut(s)	356, 488, 684, 829
Asp700I	GAANNNNTTC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	1085
AspS9I	GGNCC	1 cut(s)	1035
AsuHPI	GGTGA	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	801
BaeGI	GKGCMC	2 cut(s)	842, 1186
BalI	TGGCCA	1 cut(s)	62
Bbv12I	GWGCWC	3 cut(s)	541, 842, 1186
BbvCI	CCTCAGC	1 cut(s)	221
BbvI	GCAGC	3 cut(s)	247, 427, 430
BcgI	CGANNNNNNTGC	2 cut(s)	841, 875
BciVI	GTATCC	2 cut(s)	28, 1157
BcoDI	GTCTC	1 cut(s)	1211
BfaI	CTAG	1 cut(s)	1305
BfoI	RGCGCY	1 cut(s)	1086
BfuI	GTATCC	2 cut(s)	28, 1157
BisI	GCNGC	3 cut(s)	261, 416, 419
BlsI	GCNGC	3 cut(s)	262, 417, 420
BmgT120I	GGNCC	1 cut(s)	1035
BmiI	GGNNCC	1 cut(s)	468
BmsI	GCATC	6 cut(s)	151, 333, 610, 775, 801, 1291
Bpu10I	CCTNAGC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	801
BpuEI	CTTGAG	2 cut(s)	947, 1235
BsaBI	GATNNNNATC	1 cut(s)	522
BsaI	GGTCTC	1 cut(s)	1211
BsaJI	CCNNGG	2 cut(s)	1038, 1248
BsaXI	ACNNNNNCTCC	2 cut(s)	1016, 1046
Bsc4I	CCNNNNNNNGG	4 cut(s)	216, 319, 476, 533
Bse1I	ACTGG	5 cut(s)	173, 470, 939, 1165, 1206
Bse8I	GATNNNNATC	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	1038, 1248
BseGI	GGATG	7 cut(s)	166, 324, 328, 520, 711, 943, 1306
BseJI	GATNNNNATC	1 cut(s)	522
BseLI	CCNNNNNNNGG	4 cut(s)	216, 319, 476, 533
BseMII	CTCAG	5 cut(s)	144, 212, 424, 812, 881
BseNI	ACTGG	5 cut(s)	173, 470, 939, 1165, 1206
BseSI	GKGCMC	2 cut(s)	842, 1186
BseXI	GCAGC	3 cut(s)	247, 427, 430
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	2 cut(s)	62, 1037
BsiHKAI	GWGCWC	3 cut(s)	541, 842, 1186
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	4 cut(s)	216, 319, 476, 533
BsmAI	GTCTC	1 cut(s)	1211
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	2 cut(s)	191, 959
BsnI	GGCC	2 cut(s)	62, 1037
Bso31I	GGTCTC	1 cut(s)	1211
Bsp119I	TTCGAA	1 cut(s)	801
Bsp1286I	GDGCHC	3 cut(s)	541, 842, 1186
Bsp143I	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
Bsp19I	CCATGG	1 cut(s)	1038
BspACI	CCGC	2 cut(s)	503, 964
BspANI	GGCC	2 cut(s)	62, 1037
BspCNI	CTCAG	5 cut(s)	145, 213, 423, 813, 880
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	4 cut(s)	79, 371, 518, 899
BspT104I	TTCGAA	1 cut(s)	801
BspTNI	GGTCTC	1 cut(s)	1211
BsrI	ACTGG	5 cut(s)	173, 470, 939, 1165, 1206
BssECI	CCNNGG	2 cut(s)	1038, 1248
BssMI	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
BssT1I	CCWWGG	2 cut(s)	1038, 1248
Bst4CI	ACNGT	2 cut(s)	981, 1014
Bst6I	CTCTTC	1 cut(s)	982
BstBI	TTCGAA	1 cut(s)	801
BstC8I	GCNNGC	4 cut(s)	258, 752, 873, 968
BstDEI	CTNAG	8 cut(s)	153, 221, 239, 302, 410, 821, 867, 1276
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	7 cut(s)	166, 324, 328, 520, 711, 943, 1306
BstH2I	RGCGCY	1 cut(s)	1086
BstHHI	GCGC	1 cut(s)	1085
BstKTI	GATC	6 cut(s)	74, 379, 409, 526, 634, 907
BstMAI	GTCTC	1 cut(s)	1211
BstMBI	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 598, 868, 877, 1310
BstNSI	RCATGY	3 cut(s)	260, 970, 1317
BstSLI	GKGCMC	2 cut(s)	842, 1186
BstV1I	GCAGC	3 cut(s)	247, 427, 430
BstXI	CCANNNNNNTGG	1 cut(s)	1255
BsuI	GTATCC	2 cut(s)	28, 1157
BsuRI	GGCC	2 cut(s)	62, 1037
BtgI	CCRYGG	1 cut(s)	1038
BtgZI	GCGATG	1 cut(s)	824
BtsCI	GGATG	7 cut(s)	166, 324, 328, 520, 711, 943, 1306
BtsIMutI	CAGTG	5 cut(s)	303, 590, 627, 1010, 1213
Cac8I	GCNNGC	4 cut(s)	258, 752, 873, 968
CfoI	GCGC	1 cut(s)	1085
Cfr13I	GGNCC	1 cut(s)	1035
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	3 cut(s)	977, 1089, 1345
CviAII	CATG	6 cut(s)	257, 557, 967, 1039, 1178, 1314
CviQI	GTAC	3 cut(s)	977, 1089, 1345
DdeI	CTNAG	8 cut(s)	153, 221, 239, 302, 410, 821, 867, 1276
DpnI	GATC	6 cut(s)	73, 378, 408, 525, 633, 906
DpnII	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
DraI	TTTAAA	1 cut(s)	1239
DrdI	GACNNNNNNGTC	1 cut(s)	1265
DseDI	GACNNNNNNGTC	1 cut(s)	1265
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	982
EarI	CTCTTC	1 cut(s)	982
Eco130I	CCWWGG	2 cut(s)	1038, 1248
Eco31I	GGTCTC	1 cut(s)	1211
Eco47III	AGCGCT	1 cut(s)	1084
Eco57I	CTGAAG	1 cut(s)	291
EcoRI	GAATTC	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	1038, 1248
EcoT22I	ATGCAT	1 cut(s)	790
ErhI	CCWWGG	2 cut(s)	1038, 1248
FaeI	CATG	6 cut(s)	260, 560, 970, 1042, 1181, 1317
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	6 cut(s)	256, 556, 966, 1038, 1177, 1313
Fnu4HI	GCNGC	3 cut(s)	261, 416, 419
FokI	GGATG	7 cut(s)	173, 311, 315, 527, 718, 950, 1313
Fsp4HI	GCNGC	3 cut(s)	261, 416, 419
FspBI	CTAG	1 cut(s)	1305
GlaI	GCGC	1 cut(s)	1084
GluI	GCNGC	3 cut(s)	261, 416, 419
GsaI	CCCAGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	1086
HaeIII	GGCC	2 cut(s)	62, 1037
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	1 cut(s)	1085
Hin1II	CATG	6 cut(s)	260, 560, 970, 1042, 1181, 1317
Hin6I	GCGC	1 cut(s)	1083
HinP1I	GCGC	1 cut(s)	1083
HindIII	AAGCTT	2 cut(s)	141, 590
HinfI	GANTC	5 cut(s)	309, 580, 1007, 1294, 1333
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	840, 1184
Hpy188I	TCNGA	7 cut(s)	271, 440, 528, 568, 636, 896, 986
Hpy188III	TCNNGA	3 cut(s)	1214, 1256, 1298
Hpy8I	GTNNAC	2 cut(s)	840, 1184
HpyAV	CCTTC	3 cut(s)	62, 274, 417
HpyCH4III	ACNGT	2 cut(s)	981, 1014
HpyCH4IV	ACGT	3 cut(s)	618, 805, 1076
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 598, 868, 877, 1310
HpyF3I	CTNAG	8 cut(s)	153, 221, 239, 302, 410, 821, 867, 1276
HpySE526I	ACGT	3 cut(s)	618, 805, 1076
Hsp92II	CATG	6 cut(s)	260, 560, 970, 1042, 1181, 1317
HspAI	GCGC	1 cut(s)	1083
Kzo9I	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
LmnI	GCTCC	3 cut(s)	536, 548, 1024
Lsp1109I	GCAGC	3 cut(s)	247, 427, 430
LweI	GCATC	6 cut(s)	151, 333, 610, 775, 801, 1291
MaeI	CTAG	1 cut(s)	1305
MaeII	ACGT	3 cut(s)	618, 805, 1076
MaeIII	GTNAC	2 cut(s)	508, 1109
MalI	GATC	6 cut(s)	73, 378, 408, 525, 633, 906
MboI	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
MboII	GAAGA	8 cut(s)	32, 129, 148, 261, 284, 999, 1342, 1363
MfeI	CAATTG	1 cut(s)	756
MhlI	GDGCHC	3 cut(s)	541, 842, 1186
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	8 cut(s)	86, 336, 356, 488, 606, 684, 756, 829
MluNI	TGGCCA	1 cut(s)	62
MmeI	TCCRAC	2 cut(s)	138, 337
MnlI	CCTC	6 cut(s)	106, 175, 216, 311, 922, 1315
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	593
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	339, 1238
MslI	CAYNNNNRTG	3 cut(s)	783, 793, 971
Msp20I	TGGCCA	1 cut(s)	62
MspA1I	CMGCKG	3 cut(s)	152, 505, 871
MunI	CAATTG	1 cut(s)	756
Mva1269I	GAATGC	2 cut(s)	191, 959
MwoI	GCNNNNNNNGC	5 cut(s)	149, 598, 868, 877, 1310
NcoI	CCATGG	1 cut(s)	1038
NdeII	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
NlaIII	CATG	6 cut(s)	260, 560, 970, 1042, 1181, 1317
NlaIV	GGNNCC	1 cut(s)	468
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	2 cut(s)	508, 1109
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	3 cut(s)	260, 970, 1317
NspV	TTCGAA	1 cut(s)	801
PaeI	GCATGC	2 cut(s)	260, 970
PcsI	WCGNNNNNNNCGW	2 cut(s)	313, 811
PctI	GAATGC	2 cut(s)	191, 959
PdmI	GAANNNNTTC	1 cut(s)	593
PfeI	GAWTC	5 cut(s)	309, 580, 1007, 1294, 1333
PflMI	CCANNNNNTGG	1 cut(s)	476
PkrI	GCNGC	3 cut(s)	262, 417, 420
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	1 cut(s)	1035
PvuII	CAGCTG	2 cut(s)	152, 871
RsaI	GTAC	3 cut(s)	978, 1090, 1346
RsaNI	GTAC	3 cut(s)	977, 1089, 1345
RseI	CAYNNNNRTG	3 cut(s)	783, 793, 971
SaqAI	TTAA	2 cut(s)	339, 1238
SatI	GCNGC	3 cut(s)	261, 416, 419
Sau3AI	GATC	6 cut(s)	71, 376, 406, 523, 631, 904
Sau96I	GGNCC	1 cut(s)	1035
SduI	GDGCHC	3 cut(s)	541, 842, 1186
SfaNI	GCATC	6 cut(s)	151, 333, 610, 775, 801, 1291
SfuI	TTCGAA	1 cut(s)	801
SmiMI	CAYNNNNRTG	3 cut(s)	783, 793, 971
SmlI	CTYRAG	2 cut(s)	926, 1214
SmoI	CTYRAG	2 cut(s)	926, 1214
SphI	GCATGC	2 cut(s)	260, 970
Sse9I	AATT	8 cut(s)	86, 336, 356, 488, 606, 684, 756, 829
SsiI	CCGC	2 cut(s)	503, 964
SspMI	CTAG	1 cut(s)	1305
StyI	CCWWGG	2 cut(s)	1038, 1248
TaaI	ACNGT	2 cut(s)	981, 1014
TaiI	ACGT	3 cut(s)	621, 808, 1079
TaqI	TCGA	3 cut(s)	74, 801, 851
TasI	AATT	8 cut(s)	86, 336, 356, 488, 606, 684, 756, 829
TfiI	GAWTC	5 cut(s)	309, 580, 1007, 1294, 1333
Tru1I	TTAA	2 cut(s)	339, 1238
Tru9I	TTAA	2 cut(s)	339, 1238
TscAI	CASTG	5 cut(s)	303, 590, 634, 1017, 1213
TseFI	GTSAC	2 cut(s)	508, 1109
TseI	GCWGC	3 cut(s)	260, 415, 418
Tsp45I	GTSAC	2 cut(s)	508, 1109
TspDTI	ATGAA	6 cut(s)	26, 81, 149, 411, 752, 905
TspGWI	ACGGA	3 cut(s)	415, 527, 1180
TspRI	CASTG	5 cut(s)	303, 590, 634, 1017, 1213
Van91I	CCANNNNNTGG	1 cut(s)	476
VneI	GTGCAC	2 cut(s)	838, 1182
XapI	RAATTY	4 cut(s)	356, 488, 684, 829
XceI	RCATGY	3 cut(s)	260, 970, 1317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	593
XspI	CTAG	1 cut(s)	1305
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.