Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Reverse (-)

30451742 .. 30452644

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0189700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGTGAATTTGCAATTATGCAGGGTTGATGTTTTGGCTTCTAGTTACAATTTGAATACGGCTACTTCAGCGGATTGGGCCTTTTTACTCGTTGGTCTCTTCCTAGAGATTTCTTCAGTATTCGTTGACCAGGAATCATCTCCAAGTAAGCCCTTGTATGCTTTCGTTGGTATGCTATTAGCAATTGCAGCTCTACTCACTTGCATATGTGAGCTCATTCACAAGGGTATAAAGGAAAGAGTAGTGCTGAGGCGTTGTGGAATGTTATGGTGGTTTCATTATCCCCGTTCCCGTTATGTACTTTTTGGTACCCTTCCCAATTGTTTCGGATTAGTTGGTGGCATCTTTCAGTGCATTTGCTCGACGATTCAGTATGTTTACTACATTCGGTATGGGATGAGACCATTGAACAAAATGATTAAGCAGATTGCGAGAAAGCAAGAGATGGTTCTTAAAGGAAATGTTACTTTAAGTAATGGGAATGCAGTTTGGGATTTATGCAATGAAGGAGTTGGATTGGCTGATATTGAAAGGAGTGATAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

182

Amino Acids

20.52

Weight (kDa)

8.8

Isoelectric Point (pI)

35.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	51, 99
AfaI	GTAC	2 cut(s)	300, 310
AgsI	TTSAA	3 cut(s)	55, 409, 530
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	3 cut(s)	191, 214, 546
AluI	AGCT	3 cut(s)	191, 214, 546
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	101, 394
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	7
Asp718I	GGTACC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	131
BcoDI	GTCTC	2 cut(s)	101, 394
BfaI	CTAG	2 cut(s)	42, 104
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	351
Bpu10I	CCTNAGC	1 cut(s)	248
BsaI	GGTCTC	2 cut(s)	101, 394
Bse3DI	GCAATG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	216
BsmAI	GTCTC	2 cut(s)	101, 394
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	2 cut(s)	101, 394
Bsp1286I	GDGCHC	1 cut(s)	216
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	308
BspTNI	GGTCTC	2 cut(s)	101, 394
BsrDI	GCAATG	1 cut(s)	508
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	104
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	402
BstMAI	GTCTC	2 cut(s)	101, 394
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 77, 188
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	356
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	299, 309
CviJI	RGCY	8 cut(s)	38, 62, 80, 151, 191, 214, 521, 546
CviKI_1	RGCY	8 cut(s)	38, 62, 80, 151, 191, 214, 521, 546
CviQI	GTAC	2 cut(s)	299, 309
DdeI	CTNAG	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	2 cut(s)	101, 394
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	2 cut(s)	51, 99
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	216
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	189
FokI	GGATG	1 cut(s)	409
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	2 cut(s)	42, 104
GluI	GCNGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	80
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	134, 367
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	127, 379
Hpy188I	TCNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	127, 379
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	323, 500
HpyCH4V	TGCA	7 cut(s)	13, 21, 188, 204, 354, 485, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 77, 188
HpyF3I	CTNAG	1 cut(s)	248
KpnI	GGTACC	1 cut(s)	312
LpnPI	CCDG	3 cut(s)	7, 116, 143
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	2 cut(s)	42, 104
MaeIII	GTNAC	2 cut(s)	44, 463
MboII	GAAGA	2 cut(s)	91, 105
MfeI	CAATTG	2 cut(s)	183, 319
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	5 cut(s)	7, 14, 49, 183, 319
MmeI	TCCRAC	1 cut(s)	493
MnlI	CCTC	1 cut(s)	243
MseI	TTAA	3 cut(s)	420, 453, 470
MspA1I	CMGCKG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	2 cut(s)	183, 319
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	3 cut(s)	68, 77, 188
NdeI	CATATG	1 cut(s)	206
NlaIV	GGNNCC	1 cut(s)	310
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	134, 367
PkrI	GCNGC	1 cut(s)	190
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	129
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	310
PspPI	GGNCC	1 cut(s)	78
RsaI	GTAC	2 cut(s)	300, 310
RsaNI	GTAC	2 cut(s)	299, 309
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	3 cut(s)	420, 453, 470
SatI	GCNGC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	3 cut(s)	193, 216, 548
SfaNI	GCATC	1 cut(s)	351
Sse9I	AATT	5 cut(s)	7, 14, 49, 183, 319
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	2 cut(s)	42, 104
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	1 cut(s)	362
TasI	AATT	5 cut(s)	7, 14, 49, 183, 319
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	2 cut(s)	134, 367
Tru1I	TTAA	3 cut(s)	420, 453, 470
Tru9I	TTAA	3 cut(s)	420, 453, 470
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	266, 519
TspRI	CASTG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	7
XspI	CTAG	2 cut(s)	42, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.