Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Forward (+)

32186532 .. 32191656

Gene Structure 5125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1194200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGTTGTTTTTTATGAAGAAAGCTTCAACAGCTGAGTTAGATGCTTTCTATCCTATTAAACCAGAATGCCAAGTTGACATCCCGAAGACGCGCTTTAGGCTCAGGGCGGGGAAAACTCTTAGTGAAAGAAGATGGCATGCTGCCTTCTCTGAAGATGGTCATTTGGATATAGCTAAAGTGCTTAGACGAATCCAACGAGGGGGTGTCCATCCTGCAATCAAGGGTGTAGTTTGGGAGTTCTTGTTAGGTTGCTTTGATCCAAATAGCACCTTCGATGAACGAAATCAGCTCAGGCAGCGCCGGAGGGAGCAGTATAACAGATTGAAAGCTGAATGCCAGAAGATGGTTCCAGTTATTGGCAGTGGAAAATTTATTACAACGCCAATCATCACAGACGATGGCCAACCAACAGAAGAATCAGAAAATGGCAATATGACAGGGGCTGCAAACCATGCTTCTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTTTTGCATCAAATTGGTTTGGATGTTGTTCGCACCGATCGAGCACTTGTCTTTTATGAAAGTCAAGCTAATCAGGCAAAACTTTGGGACATTCTTTCAATTTATGCTTGGGTGGACAATGATATTGGTTATGTTCAAGGAATGAATGATATATGCTCGCCAATGGTAATTCTTATTGAAAATGAAGCAGATGCCTATTGGTGTTTCGAACGTGCTATGCGAAGGCTGCGAGAAAATTTTAGGTGCAGTGCGAGTTCGATAGGGGTGCAATCTCAGCTGGGTACACTCTCCCAAGTAATCAAAACTATTGATCCTAAACTTCATCAGCACCTTGAGGATCTAGATGGCGGGGAGTATTTATTTGCTTTTCGCATGCTAATGGTCCTGTTCCGAAGAGAGTTTTCCTTTGTGGATGCACTGTATCTTTGGGAGCTGATGTGGGCCATGGAATACAACCCAAACATTTTCTCATCATATGAAGGTCCGAGTGGGGGTGCTACACCACCAAATGTAAATGACAAAGAACTAAAGCAATATGGCAAGTTCGAGAGAAACATTGTGAAGACGGGATACACAGAACAACATGGTGCACTTTCCGTCTTTCTTGTTGCAAGTGTTCTTGAAACCAAAAATAAGCAACTTTTAAAGGAGGCTAAGGGTCTAGATGATGTTGTCTCGATCTTAGGTGGCATAACCGGAAATCTGGATGCTAGAAAGGCATGTAATGAGGCATTGAGAATTCACAAAAAGTACCTGAAGACCGTAAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

422

Amino Acids

48.04

Weight (kDa)

8.51

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	140 - 315	3.7e-36	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	190 - 310	3e-08	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1258
AccB7I	CCANNNNNTGG	2 cut(s)	346, 359
AccII	CGCG	1 cut(s)	94
AciI	CCGC	2 cut(s)	110, 840
AclWI	GGATC	3 cut(s)	254, 797, 837
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	3 cut(s)	371, 727, 1230
AcuI	CTGAAG	2 cut(s)	174, 447
AfaI	GTAC	2 cut(s)	775, 1244
AfiI	CCNNNNNNNGG	4 cut(s)	202, 346, 359, 983
AgsI	TTSAA	6 cut(s)	30, 328, 591, 629, 671, 1115
AluBI	AGCT	9 cut(s)	26, 35, 176, 292, 332, 490, 560, 769, 925
AluI	AGCT	9 cut(s)	26, 35, 176, 292, 332, 490, 560, 769, 925
Alw21I	GWGCWC	2 cut(s)	538, 1084
Alw26I	GTCTC	1 cut(s)	1171
Alw44I	GTGCAC	1 cut(s)	1080
AlwI	GGATC	3 cut(s)	254, 797, 837
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	403, 933
ApaLI	GTGCAC	1 cut(s)	1080
ApeKI	GCWGC	4 cut(s)	143, 298, 446, 718
ApoI	RAATTY	3 cut(s)	371, 727, 1230
AspLEI	GCGC	2 cut(s)	96, 303
AspS9I	GGNCC	3 cut(s)	874, 933, 974
AsuII	TTCGAA	1 cut(s)	699
AvaII	GGWCC	2 cut(s)	874, 974
BaeGI	GKGCMC	1 cut(s)	1084
BalI	TGGCCA	1 cut(s)	405
BarI	GAAGNNNNNNTAC	2 cut(s)	1046, 1078
BbsI	GAAGAC	3 cut(s)	95, 1061, 1256
Bbv12I	GWGCWC	2 cut(s)	538, 1084
BbvI	GCAGC	4 cut(s)	130, 310, 433, 705
BccI	CCATC	6 cut(s)	129, 152, 219, 340, 395, 830
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciVI	GTATCC	1 cut(s)	1055
BcoDI	GTCTC	1 cut(s)	1171
BfaI	CTAG	3 cut(s)	833, 1154, 1203
BfoI	RGCGCY	1 cut(s)	304
BfuI	GTATCC	1 cut(s)	1055
BisI	GCNGC	4 cut(s)	144, 299, 447, 719
BlsI	GCNGC	4 cut(s)	145, 300, 448, 720
Bme18I	GGWCC	2 cut(s)	874, 974
BmgT120I	GGNCC	3 cut(s)	874, 933, 974
BmiI	GGNNCC	1 cut(s)	351
BmsI	GCATC	5 cut(s)	34, 508, 673, 895, 1189
BpiI	GAAGAC	3 cut(s)	95, 1061, 1256
Bpu10I	CCTNAGC	3 cut(s)	104, 293, 1146
Bpu14I	TTCGAA	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	845
BsaJI	CCNNGG	1 cut(s)	936
BsaWI	WCCGGW	1 cut(s)	1187
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 914, 944
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 346, 359, 983
Bse1I	ACTGG	1 cut(s)	353
BseDI	CCNNGG	1 cut(s)	936
BseGI	GGATG	5 cut(s)	81, 211, 520, 910, 1204
BseLI	CCNNNNNNNGG	4 cut(s)	202, 346, 359, 983
BseMII	CTCAG	4 cut(s)	27, 118, 307, 779
BseNI	ACTGG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	1084
BseXI	GCAGC	4 cut(s)	130, 310, 433, 705
BseYI	CCCAGC	1 cut(s)	769
BsgI	GTGCAG	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	532
BshFI	GGCC	2 cut(s)	405, 935
BsiEI	CGRYCG	1 cut(s)	532
BsiHKAI	GWGCWC	2 cut(s)	538, 1084
BsiSI	CCGG	2 cut(s)	304, 1188
BslFI	GGGAC	1 cut(s)	593
BslI	CCNNNNNNNGG	4 cut(s)	202, 346, 359, 983
BsmAI	GTCTC	1 cut(s)	1171
BsmFI	GGGAC	1 cut(s)	593
BsmI	GAATGC	2 cut(s)	74, 341
BsnI	GGCC	2 cut(s)	405, 935
Bsp119I	TTCGAA	1 cut(s)	699
Bsp1286I	GDGCHC	2 cut(s)	538, 1084
Bsp143I	GATC	5 cut(s)	259, 529, 802, 829, 1170
Bsp19I	CCATGG	1 cut(s)	936
BspACI	CCGC	2 cut(s)	110, 840
BspANI	GGCC	2 cut(s)	405, 935
BspCNI	CTCAG	4 cut(s)	28, 117, 306, 778
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	351
BspPI	GGATC	3 cut(s)	254, 797, 837
BspT104I	TTCGAA	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	353
BssECI	CCNNGG	1 cut(s)	936
BssMI	GATC	5 cut(s)	259, 529, 802, 829, 1170
BssT1I	CCWWGG	1 cut(s)	936
Bst4CI	ACNGT	2 cut(s)	912, 1255
Bst6I	CTCTTC	1 cut(s)	880
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstBI	TTCGAA	1 cut(s)	699
BstC8I	GCNNGC	3 cut(s)	141, 650, 866
BstDEI	CTNAG	8 cut(s)	36, 104, 122, 185, 293, 765, 1146, 1174
BstDSI	CCRYGG	1 cut(s)	936
BstF5I	GGATG	5 cut(s)	81, 211, 520, 910, 1204
BstFNI	CGCG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	96, 303
BstKTI	GATC	5 cut(s)	262, 532, 805, 832, 1173
BstMAI	GTCTC	1 cut(s)	1171
BstMBI	GATC	5 cut(s)	259, 529, 802, 829, 1170
BstMCI	CGRYCG	1 cut(s)	532
BstMWI	GCNNNNNNNGC	9 cut(s)	32, 100, 298, 455, 496, 566, 718, 766, 1208
BstNSI	RCATGY	3 cut(s)	143, 868, 1215
BstSLI	GKGCMC	1 cut(s)	1084
BstUI	CGCG	1 cut(s)	94
BstV1I	GCAGC	4 cut(s)	130, 310, 433, 705
BstV2I	GAAGAC	3 cut(s)	95, 1061, 1256
BstX2I	RGATCY	1 cut(s)	829
BstYI	RGATCY	1 cut(s)	829
BsuI	GTATCC	1 cut(s)	1055
BsuRI	GGCC	2 cut(s)	405, 935
BtgI	CCRYGG	1 cut(s)	936
BtsCI	GGATG	5 cut(s)	81, 211, 520, 910, 1204
BtsI	GCAGTG	2 cut(s)	370, 745
BtsIMutI	CAGTG	4 cut(s)	370, 488, 745, 908
Cac8I	GCNNGC	3 cut(s)	141, 650, 866
CaiI	CAGNNNCTG	1 cut(s)	446
CfoI	GCGC	2 cut(s)	96, 303
Cfr13I	GGNCC	3 cut(s)	874, 933, 974
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	774, 1243
CviAII	CATG	6 cut(s)	140, 455, 865, 937, 1076, 1212
CviQI	GTAC	2 cut(s)	774, 1243
DdeI	CTNAG	8 cut(s)	36, 104, 122, 185, 293, 765, 1146, 1174
DpnI	GATC	5 cut(s)	261, 531, 804, 831, 1172
DpnII	GATC	5 cut(s)	259, 529, 802, 829, 1170
DraI	TTTAAA	1 cut(s)	1137
DrdI	GACNNNNNNGTC	1 cut(s)	1258
DseDI	GACNNNNNNGTC	1 cut(s)	1258
EaeI	YGGCCR	1 cut(s)	403
Eam1104I	CTCTTC	1 cut(s)	880
EarI	CTCTTC	1 cut(s)	880
Eco130I	CCWWGG	1 cut(s)	936
Eco47I	GGWCC	2 cut(s)	874, 974
Eco57I	CTGAAG	2 cut(s)	174, 447
EcoRI	GAATTC	1 cut(s)	1230
EcoT14I	CCWWGG	1 cut(s)	936
ErhI	CCWWGG	1 cut(s)	936
FaeI	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	593
FatI	CATG	6 cut(s)	139, 454, 864, 936, 1075, 1211
FauI	CCCGC	2 cut(s)	103, 833
FauNDI	CATATG	1 cut(s)	967
Fnu4HI	GCNGC	4 cut(s)	144, 299, 447, 719
FokI	GGATG	5 cut(s)	68, 198, 527, 917, 1211
Fsp4HI	GCNGC	4 cut(s)	144, 299, 447, 719
FspBI	CTAG	3 cut(s)	833, 1154, 1203
GlaI	GCGC	2 cut(s)	95, 302
GluI	GCNGC	4 cut(s)	144, 299, 447, 719
GsaI	CCCAGC	1 cut(s)	773
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	405, 935
HapII	CCGG	2 cut(s)	304, 1188
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	96, 303
Hin1II	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
Hin6I	GCGC	2 cut(s)	94, 301
HinP1I	GCGC	2 cut(s)	94, 301
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	24, 488
HinfI	GANTC	3 cut(s)	192, 419, 478
HpaII	CCGG	2 cut(s)	304, 1188
Hpy166II	GTNNAC	4 cut(s)	79, 607, 776, 1082
Hpy188I	TCNGA	5 cut(s)	154, 424, 466, 884, 978
Hpy188III	TCNNGA	7 cut(s)	85, 833, 1039, 1112, 1154, 1168, 1196
Hpy8I	GTNNAC	4 cut(s)	79, 607, 776, 1082
HpyAV	CCTTC	4 cut(s)	157, 283, 708, 965
HpyCH4III	ACNGT	2 cut(s)	912, 1255
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	8 cut(s)	218, 449, 499, 738, 760, 908, 1082, 1103
HpyF10VI	GCNNNNNNNGC	9 cut(s)	32, 100, 298, 455, 496, 566, 718, 766, 1208
HpyF3I	CTNAG	8 cut(s)	36, 104, 122, 185, 293, 765, 1146, 1174
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
HspAI	GCGC	2 cut(s)	94, 301
Kzo9I	GATC	5 cut(s)	259, 529, 802, 829, 1170
LmnI	GCTCC	2 cut(s)	310, 922
Lsp1109I	GCAGC	4 cut(s)	130, 310, 433, 705
LweI	GCATC	5 cut(s)	34, 508, 673, 895, 1189
MaeI	CTAG	3 cut(s)	833, 1154, 1203
MaeII	ACGT	1 cut(s)	703
MalI	GATC	5 cut(s)	261, 531, 804, 831, 1172
MboI	GATC	5 cut(s)	259, 529, 802, 829, 1170
MflI	RGATCY	1 cut(s)	829
MhlI	GDGCHC	2 cut(s)	538, 1084
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	6 cut(s)	371, 504, 591, 660, 727, 1230
MluNI	TGGCCA	1 cut(s)	405
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	5 cut(s)	194, 300, 820, 1135, 1213
Mox20I	TGGCCA	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	2 cut(s)	60, 1136
MslI	CAYNNNNRTG	1 cut(s)	869
Msp20I	TGGCCA	1 cut(s)	405
MspA1I	CMGCKG	2 cut(s)	35, 769
MspI	CCGG	2 cut(s)	304, 1188
Mva1269I	GAATGC	2 cut(s)	74, 341
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	9 cut(s)	32, 100, 298, 455, 496, 566, 718, 766, 1208
NcoI	CCATGG	1 cut(s)	936
NdeI	CATATG	1 cut(s)	967
NdeII	GATC	5 cut(s)	259, 529, 802, 829, 1170
NlaIII	CATG	6 cut(s)	143, 458, 868, 940, 1079, 1215
NlaIV	GGNNCC	1 cut(s)	351
NspI	RCATGY	3 cut(s)	143, 868, 1215
NspV	TTCGAA	1 cut(s)	699
PaeI	GCATGC	2 cut(s)	143, 868
PcsI	WCGNNNNNNNCGW	3 cut(s)	196, 529, 709
PctI	GAATGC	2 cut(s)	74, 341
PfeI	GAWTC	3 cut(s)	192, 419, 478
PflMI	CCANNNNNTGG	2 cut(s)	346, 359
PkrI	GCNGC	4 cut(s)	145, 300, 448, 720
Ple19I	CGATCG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	769
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	3 cut(s)	874, 933, 974
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	829
PvuI	CGATCG	1 cut(s)	532
PvuII	CAGCTG	2 cut(s)	35, 769
RsaI	GTAC	2 cut(s)	775, 1244
RsaNI	GTAC	2 cut(s)	774, 1243
RseI	CAYNNNNRTG	1 cut(s)	869
SaqAI	TTAA	2 cut(s)	60, 1136
SatI	GCNGC	4 cut(s)	144, 299, 447, 719
Sau3AI	GATC	5 cut(s)	259, 529, 802, 829, 1170
Sau96I	GGNCC	3 cut(s)	874, 933, 974
SduI	GDGCHC	2 cut(s)	538, 1084
SfaNI	GCATC	5 cut(s)	34, 508, 673, 895, 1189
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	2 cut(s)	874, 974
SmiMI	CAYNNNNRTG	1 cut(s)	869
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
SphI	GCATGC	2 cut(s)	143, 868
Sse9I	AATT	6 cut(s)	371, 504, 591, 660, 727, 1230
SsiI	CCGC	2 cut(s)	110, 840
SspMI	CTAG	3 cut(s)	833, 1154, 1203
StyI	CCWWGG	1 cut(s)	936
TaaI	ACNGT	2 cut(s)	912, 1255
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	6 cut(s)	276, 532, 699, 749, 1038, 1169
TasI	AATT	6 cut(s)	371, 504, 591, 660, 727, 1230
TfiI	GAWTC	3 cut(s)	192, 419, 478
Tru1I	TTAA	2 cut(s)	60, 1136
Tru9I	TTAA	2 cut(s)	60, 1136
TscAI	CASTG	4 cut(s)	370, 488, 745, 915
TseI	GCWGC	4 cut(s)	143, 298, 446, 718
TspDTI	ATGAA	7 cut(s)	32, 294, 564, 650, 690, 803, 984
TspGWI	ACGGA	1 cut(s)	1078
TspRI	CASTG	4 cut(s)	370, 488, 745, 915
Van91I	CCANNNNNTGG	2 cut(s)	346, 359
VneI	GTGCAC	1 cut(s)	1080
VpaK11BI	GGWCC	2 cut(s)	874, 974
XapI	RAATTY	3 cut(s)	371, 727, 1230
XbaI	TCTAGA	2 cut(s)	832, 1153
XceI	RCATGY	3 cut(s)	143, 868, 1215
XspI	CTAG	3 cut(s)	833, 1154, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.