Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002126

Physical Location & Seq

Genomic Coordinates Reverse (-)

20269030 .. 20274610

Gene Structure 5581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00180980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGAGTTTTTTATGAAGAAAGCTTCCACAGCTGAGTTGGATGCTTTCTATCCAGTTAGAGAGGAATGCCGAGTTGAAGTCCCCAAGACCCGATTTAGGCTGAGGGCTGGGAAAACTCTTAGTGCAAGAAGATGGCATGCTGCCTTCTCTGAAGATGGTCATTTGGATATAGCGTCTGTGCTTAGACGAATCCAACGAGGGGGCATCCATCCTGCAATTAAAGGTGTAGTCTGGGAATTCTTGTTAGGTTGTTTTGATCCAAGTAGCACCTTTGATGAACGGAATGATCTCAGGCAGCAGCGAAGGGAGATGTATGTCAGATTGAAAGCTGAATGCAATAAGATGGTTCCAGTTATTGGTAGTGGAAAATTTATTACAACACCGCTGGTCACGGATGATGGCGATCCAATAGATGGAGCACCAAATGGAGCAAGGCATGATGTTTCAGACAAGAAAGTGATTCAGTGGAAGCTTTTCTTGCATCAAATTGGTTTGGACGTTGTTCGCACTGATCGGACACTTGTATTTTATGAGAGTGAAACTAATCAGGCAAAACTTTGGGAAATTCTTTCAGTTTATGCTTGGATGGACAACGATATTGGTTATGTCCAAGGAATGAATGATATATGCTCGCCAATTGTCATTCTCATTGAAAATCACGCAGATGCATTTTGGTGTTTCGAACGTGCGATGCGAAAGCTGAGAGAAAATTTTAGGTGCACTTCTACTTCGATGGGGGTGCAATCTCAGCTGGCTACGCTCTCGCAAGTAATCAGAACTATTGATCCTAAACTTCATCAACACCTTGAGGAACTAGATGGTGGGGAGTATTTATTTGCATTCCGCATGCTGATGGTGCTGTTCCGAAGAGAGTTTTCCTTTGTGGATTCACTGTATCTTTGGGAGATTGGTTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04137 map04137

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

306

Amino Acids

35.46

Weight (kDa)

6.47

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	150 - 303	3.1e-35	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	184 - 298	1.1e-09	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002126)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20440 AT2G20440 AT2G20440 AT2G20440 AT4G28550 AT4G28550 AT4G28550
fragaria_vesca	FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100 FvH4_2g21100
malus_domestica	MD05G1194200.v1.1 MD10G1180900.v1.1
prunus_persica	Prupe.8G220800_v2.0.a1 Prupe.8G220800_v2.0.a1
pyrus_communis	pycom05g18150 pycom10g15670
rosa_chinensis	RchiOBHm_Chr6g0287601
rosa_laevigata	RLG00000012481
rosa_multiflora	Rmu_sc0004974.1_g000005 Rmu_sc0007029.1_g000007
rosa_roxburghii	Rroxscaffold_7G00180980 Rroxscaffold_7G00181360
rosa_rugosa	Rorug06G0189600 Rorug06G0189700 Rorug06G0189800 Rorug06G0189900 Rorug06G0190000
rosa_samantha	Rh6AG300500 Rh6BG306000 Rh6CG303200 Rh6CG314600 Rh6DG297900
rosa_wichuraiana	Rw6G025920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	356, 413
AciI	CCGC	2 cut(s)	383, 844
AclWI	GGATC	3 cut(s)	251, 398, 779
AcsI	RAATTY	4 cut(s)	236, 368, 564, 709
AcuI	CTGAAG	1 cut(s)	171
AfiI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
AgsI	TTSAA	3 cut(s)	77, 325, 653
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	7 cut(s)	23, 32, 329, 472, 700, 751, 918
AluI	AGCT	7 cut(s)	23, 32, 329, 472, 700, 751, 918
Alw21I	GWGCWC	2 cut(s)	421, 722
Alw44I	GTGCAC	1 cut(s)	718
AlwI	GGATC	3 cut(s)	251, 398, 779
ApaLI	GTGCAC	1 cut(s)	718
ApeKI	GCWGC	3 cut(s)	140, 295, 298
ApoI	RAATTY	4 cut(s)	236, 368, 564, 709
Asp700I	GAANNNNTTC	1 cut(s)	473
AsuII	TTCGAA	1 cut(s)	681
BaeGI	GKGCMC	1 cut(s)	722
Bbv12I	GWGCWC	2 cut(s)	421, 722
BbvCI	CCTCAGC	1 cut(s)	101
BbvI	GCAGC	3 cut(s)	127, 307, 310
BcgI	CGANNNNNNTGC	2 cut(s)	721, 755
BfaI	CTAG	1 cut(s)	815
BisI	GCNGC	3 cut(s)	141, 296, 299
BlsI	GCNGC	3 cut(s)	142, 297, 300
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	5 cut(s)	31, 213, 490, 655, 681
Bpu10I	CCTNAGC	1 cut(s)	101
Bpu14I	TTCGAA	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	827
BsaBI	GATNNNNATC	1 cut(s)	402
BsaJI	CCNNGG	1 cut(s)	610
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
Bse1I	ACTGG	2 cut(s)	53, 350
Bse8I	GATNNNNATC	1 cut(s)	402
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	5 cut(s)	46, 204, 208, 400, 591
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
BseMII	CTCAG	5 cut(s)	24, 92, 304, 692, 761
BseNI	ACTGG	2 cut(s)	53, 350
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	3 cut(s)	127, 307, 310
BseYI	CCCAGC	1 cut(s)	107
BsiHKAI	GWGCWC	2 cut(s)	421, 722
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	96, 199, 356, 413
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	3 cut(s)	71, 338, 839
Bsp119I	TTCGAA	1 cut(s)	681
Bsp1286I	GDGCHC	2 cut(s)	421, 722
Bsp143I	GATC	5 cut(s)	256, 286, 403, 511, 784
BspACI	CCGC	2 cut(s)	383, 844
BspCNI	CTCAG	5 cut(s)	25, 93, 303, 693, 760
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	3 cut(s)	251, 398, 779
BspT104I	TTCGAA	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	53, 350
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	5 cut(s)	256, 286, 403, 511, 784
BssT1I	CCWWGG	1 cut(s)	610
Bst4CI	ACNGT	1 cut(s)	894
Bst6I	CTCTTC	1 cut(s)	862
BstBI	TTCGAA	1 cut(s)	681
BstC8I	GCNNGC	4 cut(s)	138, 632, 753, 848
BstDEI	CTNAG	7 cut(s)	33, 101, 119, 182, 290, 701, 747
BstF5I	GGATG	5 cut(s)	46, 204, 208, 400, 591
BstKTI	GATC	5 cut(s)	259, 289, 406, 514, 787
BstMBI	GATC	5 cut(s)	256, 286, 403, 511, 784
BstMWI	GCNNNNNNNGC	5 cut(s)	29, 478, 748, 757, 856
BstNSI	RCATGY	2 cut(s)	140, 850
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	127, 307, 310
BtgZI	GCGATG	1 cut(s)	704
BtsCI	GGATG	5 cut(s)	46, 204, 208, 400, 591
BtsIMutI	CAGTG	3 cut(s)	470, 507, 890
Cac8I	GCNNGC	4 cut(s)	138, 632, 753, 848
CseI	GACGC	1 cut(s)	162
CviAII	CATG	3 cut(s)	137, 437, 847
DdeI	CTNAG	7 cut(s)	33, 101, 119, 182, 290, 701, 747
DpnI	GATC	5 cut(s)	258, 288, 405, 513, 786
DpnII	GATC	5 cut(s)	256, 286, 403, 511, 784
Eam1104I	CTCTTC	1 cut(s)	862
EarI	CTCTTC	1 cut(s)	862
Eco130I	CCWWGG	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	171
EcoRI	GAATTC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	610
FaeI	CATG	3 cut(s)	140, 440, 850
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	3 cut(s)	136, 436, 846
Fnu4HI	GCNGC	3 cut(s)	141, 296, 299
FokI	GGATG	5 cut(s)	53, 191, 195, 407, 598
Fsp4HI	GCNGC	3 cut(s)	141, 296, 299
FspBI	CTAG	1 cut(s)	815
GluI	GCNGC	3 cut(s)	141, 296, 299
GsaI	CCCAGC	1 cut(s)	111
HgaI	GACGC	1 cut(s)	162
Hin1II	CATG	3 cut(s)	140, 440, 850
HindIII	AAGCTT	2 cut(s)	21, 470
HinfI	GANTC	3 cut(s)	189, 460, 887
Hpy166II	GTNNAC	1 cut(s)	720
Hpy188I	TCNGA	6 cut(s)	151, 320, 448, 516, 776, 866
Hpy8I	GTNNAC	1 cut(s)	720
HpyAV	CCTTC	2 cut(s)	154, 297
HpyCH4III	ACNGT	1 cut(s)	894
HpyCH4IV	ACGT	2 cut(s)	498, 685
HpyCH4V	TGCA	8 cut(s)	125, 215, 336, 481, 668, 720, 742, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	29, 478, 748, 757, 856
HpyF3I	CTNAG	7 cut(s)	33, 101, 119, 182, 290, 701, 747
HpySE526I	ACGT	2 cut(s)	498, 685
Hsp92II	CATG	3 cut(s)	140, 440, 850
Kzo9I	GATC	5 cut(s)	256, 286, 403, 511, 784
LmnI	GCTCC	2 cut(s)	416, 428
LpnPI	CCDG	9 cut(s)	66, 93, 217, 225, 277, 363, 371, 533, 737
Lsp1109I	GCAGC	3 cut(s)	127, 307, 310
LweI	GCATC	5 cut(s)	31, 213, 490, 655, 681
MaeI	CTAG	1 cut(s)	815
MaeII	ACGT	2 cut(s)	498, 685
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	5 cut(s)	258, 288, 405, 513, 786
MboI	GATC	5 cut(s)	256, 286, 403, 511, 784
MboII	GAAGA	4 cut(s)	28, 141, 164, 879
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	2 cut(s)	421, 722
MluCI	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
MmeI	TCCRAC	2 cut(s)	18, 217
MnlI	CCTC	4 cut(s)	55, 96, 191, 802
Mph1103I	ATGCAT	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	473
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	3 cut(s)	663, 673, 851
MspA1I	CMGCKG	4 cut(s)	32, 385, 751, 918
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	3 cut(s)	71, 338, 839
MwoI	GCNNNNNNNGC	5 cut(s)	29, 478, 748, 757, 856
NdeII	GATC	5 cut(s)	256, 286, 403, 511, 784
NlaIII	CATG	3 cut(s)	140, 440, 850
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	2 cut(s)	140, 850
NspV	TTCGAA	1 cut(s)	681
PaeI	GCATGC	2 cut(s)	140, 850
PcsI	WCGNNNNNNNCGW	2 cut(s)	193, 691
PctI	GAATGC	3 cut(s)	71, 338, 839
PdmI	GAANNNNTTC	1 cut(s)	473
PfeI	GAWTC	3 cut(s)	189, 460, 887
PflMI	CCANNNNNTGG	2 cut(s)	356, 413
PkrI	GCNGC	3 cut(s)	142, 297, 300
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	348
PvuII	CAGCTG	3 cut(s)	32, 751, 918
RseI	CAYNNNNRTG	3 cut(s)	663, 673, 851
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	141, 296, 299
Sau3AI	GATC	5 cut(s)	256, 286, 403, 511, 784
SduI	GDGCHC	2 cut(s)	421, 722
SfaNI	GCATC	5 cut(s)	31, 213, 490, 655, 681
SfuI	TTCGAA	1 cut(s)	681
SmiMI	CAYNNNNRTG	3 cut(s)	663, 673, 851
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
SphI	GCATGC	2 cut(s)	140, 850
Sse9I	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
SsiI	CCGC	2 cut(s)	383, 844
SspMI	CTAG	1 cut(s)	815
StyI	CCWWGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	894
TaiI	ACGT	2 cut(s)	501, 688
TaqI	TCGA	2 cut(s)	681, 731
TasI	AATT	7 cut(s)	216, 236, 368, 486, 564, 636, 709
TfiI	GAWTC	3 cut(s)	189, 460, 887
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	3 cut(s)	470, 514, 897
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	140, 295, 298
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	4 cut(s)	29, 291, 632, 785
TspGWI	ACGGA	2 cut(s)	295, 407
TspRI	CASTG	3 cut(s)	470, 514, 897
Van91I	CCANNNNNTGG	2 cut(s)	356, 413
VneI	GTGCAC	1 cut(s)	718
XapI	RAATTY	4 cut(s)	236, 368, 564, 709
XceI	RCATGY	2 cut(s)	140, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmnI	GAANNNNTTC	1 cut(s)	473
XspI	CTAG	1 cut(s)	815
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.