AT2G20490

H ACA ribonucleoprotein complex subunit 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012395
Physical Location & Seq
Forward (+)
8831681 .. 8832929
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20490.1

Sequence Viewer

Length: 195 bp
ATGTATCTTCAGTGCTATATCAACGAGAAGGGTGAGAAGGTTTACACAACTAAGAAGGAATCACCGCTAGGGCTAGCCACTGAATCTGCCCATCCAGCCCGGTTCTCCCCTGACGATAAATACTCAAAGCAGAGAGTATTGTTGAAGAAGCGATTTGGTCTCTTACCGACCCAAAACGCACCTCTCCAGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000723 GO:0000741 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0005730 GO:0005732 GO:0006139 GO:0006259 GO:0006278 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0010833 GO:0015030 GO:0016043 GO:0016070 GO:0016072 GO:0016073 GO:0016604 GO:0018130 GO:0019438 GO:0022613 GO:0030154 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032200 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0040031 GO:0042254 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0072588 GO:0072589 GO:0090304 GO:0090661 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1904872 GO:1904874 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nop10p

Protein Analysis

64

Amino Acids

7.39

Weight (kDa)

9.52

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop10p PF04135 3 - 52 1.6e-20 Nucleolar RNA-binding protein, Nop10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20490 AT2G20490 AT2G20490
fragaria_vesca FvH4_2g21220 FvH4_2g21220
malus_domestica MD05G1194800.v1.1 MD10G1181400.v1.1
prunus_persica Prupe.8G221500_v2.0.a1
pyrus_communis pycom05g18210 pycom10g15740
rosa_chinensis RchiOBHm_Chr6g0287721
rosa_multiflora Rmu_sc0003877.1_g000014
rosa_roxburghii Rroxscaffold_7G00181100 Rroxscaffold_7G00181250
rosa_rugosa Rorug06G0191300
rosa_samantha Rh6BG307200 Rh6CG302300 Rh6DG298900
rosa_wichuraiana Rw6G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 65
AfaI GTAC 1 cut(s) 191
AgsI TTSAA 1 cut(s) 145
Alw26I GTCTC 1 cut(s) 164
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 2 cut(s) 44, 54
AsuNHI GCTAGC 1 cut(s) 73
BccI CCATC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 2 cut(s) 68, 74
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 100
BmtI GCTAGC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 187
BsiSI CCGG 1 cut(s) 100
BsmAI GTCTC 1 cut(s) 164
Bso31I GGTCTC 1 cut(s) 164
BspACI CCGC 1 cut(s) 65
BspOI GCTAGC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 17, 78
Cac8I GCNNGC 1 cut(s) 75
Csp6I GTAC 1 cut(s) 190
CviJI RGCY 3 cut(s) 73, 77, 98
CviKI_1 RGCY 3 cut(s) 73, 77, 98
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 164
FaiI YATR 1 cut(s) 18
FokI GGATG 1 cut(s) 78
FspBI CTAG 2 cut(s) 68, 74
GsuI CTGGAG 1 cut(s) 170
HapII CCGG 1 cut(s) 100
HinfI GANTC 2 cut(s) 59, 83
HpaII CCGG 1 cut(s) 100
HphI GGTGA 2 cut(s) 44, 54
Hpy166II GTNNAC 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 3 cut(s) 22, 31, 49
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 51
LpnPI CCDG 3 cut(s) 108, 113, 123
MaeI CTAG 2 cut(s) 68, 74
MboII GAAGA 1 cut(s) 157
MnlI CCTC 1 cut(s) 192
MspI CCGG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 95
NciI CCSGG 1 cut(s) 100
NheI GCTAGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 59, 83
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
ScaI AGTACT 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 100
SetI ASST 2 cut(s) 42, 184
SgeI CNNG 7 cut(s) 37, 80, 86, 107, 111, 112, 122
SsiI CCGC 1 cut(s) 65
SspMI CTAG 2 cut(s) 68, 74
StyD4I CCNGG 1 cut(s) 98
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 2 cut(s) 59, 83
TscAI CASTG 2 cut(s) 17, 85
TspRI CASTG 2 cut(s) 17, 85
XspI CTAG 2 cut(s) 68, 74
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.