MD05G1194800.v1.1

H ACA ribonucleoprotein complex subunit 3-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012395
Physical Location & Seq
Forward (+)
32222749 .. 32224241
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1194800.v1.1.491

Sequence Viewer

Length: 195 bp
ATGTATCTTCAGTACTACATAAACGAGAACGGCAACAAAGTGTACACTACCAAGAAGGAATCACCACTTGGGGAAGCTACACAATCTGCCCATCCAGCCCGCTTCTCCCCAGATGACAAATTTTCGAGGCAAAGATATCTTCTGAAGAAGCGCTTTGGATTGTTGCCAACCCAGCAGTCACCTCTAAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0000723 GO:0000741 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005697 GO:0005730 GO:0005732 GO:0006139 GO:0006259 GO:0006278 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007004 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009451 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0010833 GO:0015030 GO:0016043 GO:0016070 GO:0016072 GO:0016073 GO:0016604 GO:0018130 GO:0019438 GO:0022613 GO:0030154 GO:0030515 GO:0031118 GO:0031120 GO:0031429 GO:0031974 GO:0031981 GO:0032200 GO:0032501 GO:0032502 GO:0032879 GO:0032991 GO:0034470 GO:0034513 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0040031 GO:0042254 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048518 GO:0048856 GO:0048869 GO:0050789 GO:0051276 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0070034 GO:0071704 GO:0071840 GO:0071897 GO:0072588 GO:0072589 GO:0090304 GO:0090661 GO:0097159 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1904872 GO:1904874 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nop10p

Protein Analysis

65

Amino Acids

7.52

Weight (kDa)

9.85

Isoelectric Point (pI)

61.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop10p PF04135 3 - 52 2.1e-21 Nucleolar RNA-binding protein, Nop10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012395)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20490 AT2G20490 AT2G20490
fragaria_vesca FvH4_2g21220 FvH4_2g21220
malus_domestica MD05G1194800.v1.1 MD10G1181400.v1.1
prunus_persica Prupe.8G221500_v2.0.a1
pyrus_communis pycom05g18210 pycom10g15740
rosa_chinensis RchiOBHm_Chr6g0287721
rosa_multiflora Rmu_sc0003877.1_g000014
rosa_roxburghii Rroxscaffold_7G00181100 Rroxscaffold_7G00181250
rosa_rugosa Rorug06G0191300
rosa_samantha Rh6BG307200 Rh6CG302300 Rh6DG298900
rosa_wichuraiana Rw6G026020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 2 cut(s) 14, 44
AfeI AGCGCT 1 cut(s) 152
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Aor51HI AGCGCT 1 cut(s) 152
ApoI RAATTY 1 cut(s) 119
AspLEI GCGC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 54, 171
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 46
BfoI RGCGCY 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 14
BseGI GGATG 1 cut(s) 91
BseYI CCCAGC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 42
BspACI CCGC 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 42
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 100
BstF5I GGATG 1 cut(s) 91
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 95, 172
BtsCI GGATG 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 100
CfoI GCGC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 13, 43
CviJI RGCY 2 cut(s) 77, 98
CviKI_1 RGCY 2 cut(s) 77, 98
CviQI GTAC 2 cut(s) 13, 43
Eco32I GATATC 1 cut(s) 137
Eco47III AGCGCT 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 164
EcoRV GATATC 1 cut(s) 137
FaiI YATR 1 cut(s) 20
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FauI CCCGC 1 cut(s) 107
FokI GGATG 1 cut(s) 78
GlaI GCGC 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 154
HhaI GCGC 1 cut(s) 153
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HinfI GANTC 1 cut(s) 59
HphI GGTGA 2 cut(s) 54, 171
Hpy166II GTNNAC 2 cut(s) 43, 45
Hpy188I TCNGA 1 cut(s) 144
Hpy8I GTNNAC 2 cut(s) 43, 45
HpyAV CCTTC 1 cut(s) 49
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 172
HspAI GCGC 1 cut(s) 151
LpnPI CCDG 3 cut(s) 108, 123, 185
MaeIII GTNAC 1 cut(s) 177
MboII GAAGA 2 cut(s) 131, 157
MluCI AATT 1 cut(s) 119
MnlI CCTC 2 cut(s) 120, 192
MwoI GCNNNNNNNGC 2 cut(s) 95, 172
NmuCI GTSAC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 59
PspFI CCCAGC 1 cut(s) 171
RsaI GTAC 2 cut(s) 14, 44
RsaNI GTAC 2 cut(s) 13, 43
ScaI AGTACT 1 cut(s) 14
SetI ASST 2 cut(s) 79, 184
SgeI CNNG 8 cut(s) 37, 64, 80, 107, 111, 122, 138, 184
Sse9I AATT 1 cut(s) 119
SsiI CCGC 1 cut(s) 100
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 119
TatI WGTACW 2 cut(s) 12, 42
TfiI GAWTC 1 cut(s) 59
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
XapI RAATTY 1 cut(s) 119
ZrmI AGTACT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.