Rorug06G0191300

H ACA ribonucleoprotein complex subunit 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000369
Physical Location & Seq
Forward (+)
30764721 .. 30769136
4416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0191300.1

Sequence Viewer

Length: 2190 bp
ATGAGTGGAATGGAGTTCAGTGATGGTTTTGTCTCAAATGAGCATCGGGAGCTCCATCGTTCTGCTACAGAAAGTGCAGATCCATTATCTGCCTCTCCGCTGCACATTGGTCCAAAGTCTCCAAGGTCCCCAAAGTCTCCCAAATCCCCAAAGTCCCCAAACTCTCCAAGGTCCCTAAAGGTGCAGGGAAAAACTGGAAAAGTTAGTCCACTCGCGCATGATAGGCATTCACATTCTTCTGTAGATGGGCGTCCTAAAAAGGGTGGTTCTGGGGGAAAAGGCACCTGGGGAGGGTTACTTGATACCGAGGACAGTTGCACCGTTGACTCTAGTGACCCTAACTTTGATAGCAGTGAGGAATGTGACCAATCAAATGCAAAATCTGAGAGAGTGGATTTTGAGGAATACAAAAAGAAAGCAACAGTAATAGTGGAGGAATTCTTTGCTACCGATGACATTACCTCCACTGCAAATGAACTAAGAGAACTTGATATGCCTAGCTATAGCTTCTACTTTGTAAAGAAACTTGTTTCTAAGGCTATGGATAGGCATGACAAGGAGAAAGAAATGGCTGCTGTTCTTTTATCTGCATTATATGCTGATTTCATTGATCCCCCACAGGTTTACAAAGGGTTCTGTAAATTGGTAGAATCTGCAGATGACTTGATTGTGGATATACCAGATACAGTTGATGTTCTTGCACTTTTCATTGCCCGAGCTGTTGTTGATGACATACTTCCTCCTGCATTTTTGAAAAAACAAATGAATTATTTACCCAAGGACTCAAAAGGGGTTGAAGTTTTGAAGAGAGCTGAGAAGGGCTACTTAGCAGCCCCTCTCCATGCTGAAATCATCGAGCGGCGGTGGGGAGGTAGCAAGAAGAGAACTGTTGAGGATGTTAAGGCTAAGATAAATAATTTGTTGATAGAGTATGTAGTCAGTGGTGACAAGAAAGAGGCTTGCAGATGCATCAAGGATTTGAAAGTTCCTTTTTTCCACCATGAAATAGTTAAGCGAGCTCTTGTAATGGCAATGGAGAGGTGGCAAGCTGAAGGCCGGCTACTAGATTTGCTGAAAGAAGCTGCCGAAGAAGGTTTAATCAACTCAAGCCAAGTATCAAAAGGCTTTGGTAGGATGATCGACTATGTTGATGACTTGTCGCTTGACATACCAAATGCCCGGGGAATATTACAGTCATTGATCTCTAAGGCAGCATCGGAGGGCTGGGTGTGTGCTTCGTCCTTAAAGTCACTCTCATTGGAGCCAGAAAAGCCATCATTAGAAGATAGTGTTGCGAGAGCTTTCAAGATGAAGGCTCAATCTATTATTCAAGAGTACTTCTTGTCTGGGGATATCTCAGAGGTAAGCAGTTGTCTAGAGTCAGAGAACAGTACTTGCTCGTCCGAACTGAATGCTATCTTTGTTAAAAGACTGATAACTCTAGCAATGGATCGGAAGAACAGGGAGAAGGAAATGGCATCCGTGTTGCTGTCTTCTCTATGTTTTCCAGCTGATGATGTTGTAAATGGGTTTGTAATGCTGATAGAATCCGCAGATGACACAGCTCTGGATAATCCTATTGTTGTTGAAGACCTTGCAATGTTTCTTGCTAGATCAGTGGTGGATGAAGTTCTAGCCCCACAACATTTGGAAGAGATTGGAAGTCAGTGTGTGGCACCTGATTCAATCGGGAGCAAGGTTCTTAAAATGGCAAAGTCACTGCTAAAGGCCCGGCTTTCTGGGGAGCGAATACTAAGGTGTTGGGGTGGTGGAGGAAGCAGCAGGCCTGGATGGGCAGTTGAGGATGTTAAGGACAAGATTGGGAAGTTGCTAGAAGAGTTTGAGTCTGGAGGTGGCGTGAGGGAGGCTTGCCGCTGCATGAAGGAGTTAGGCATGCCATTTTTCAACCATGAGGTTGTCAAAAAAGCTTTGGTTAGCATTATGGAAAAGAAGAATGAAAGACTTTGGATTCTGCTCGAGGAATGTTTTGGCTCTGGACTCATAACAATGAACCAAATGACCAAGGGGTTCGGGAGAGTTGCAGAATCTCTAGATGATTTAGCTTTGGATGTTCCTGATGCCCAGAAACAATTCGCTCATTACGTCGAACTAGCAAAGACTGCAGGGTGGTTGGATTCCTCATTTTGTTTCAGCAAATCTGGACATGTTACAGAGAATGGGACCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
Nop10p

Protein Analysis

729

Amino Acids

80.29

Weight (kDa)

5.47

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 137 - 247 2e-21 MA3 domain
MA3 PF02847 301 - 409 7.8e-27 MA3 domain
MA3 PF02847 435 - 545 1.2e-17 MA3 domain
MA3 PF02847 603 - 712 1.4e-28 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 281, 1675
AccBSI CCGCTC 1 cut(s) 859
AccII CGCG 1 cut(s) 215
AciI CCGC 5 cut(s) 98, 859, 862, 1551, 1873
AclWI GGATC 3 cut(s) 74, 605, 1458
AcsI RAATTY 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 1071
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 2 cut(s) 1337, 1393
AfiI CCNNNNNNNGG 2 cut(s) 260, 291
AflIII ACRYGT 1 cut(s) 2164
AgsI TTSAA 9 cut(s) 754, 797, 805, 982, 1306, 1331, 1589, 1686, 1906
AjnI CCWGG 2 cut(s) 284, 1786
Alw21I GWGCWC 2 cut(s) 54, 1021
Alw26I GTCTC 3 cut(s) 37, 123, 141
AlwI GGATC 3 cut(s) 74, 605, 1458
Ama87I CYCGRG 3 cut(s) 714, 1179, 1976
AoxI GGCC 3 cut(s) 1054, 1728, 1784
ApeKI GCWGC 7 cut(s) 100, 572, 830, 1082, 1211, 1779, 1875
ApoI RAATTY 1 cut(s) 437
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
Asp700I GAANNNNTTC 1 cut(s) 2090
AspLEI GCGC 1 cut(s) 217
AspS9I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
AsuC2I CCSGG 3 cut(s) 1180, 1181, 1732
AsuHPI GGTGA 1 cut(s) 956
AvaI CYCGRG 3 cut(s) 714, 1179, 1976
AvaII GGWCC 4 cut(s) 110, 126, 171, 2181
BanI GGYRCC 2 cut(s) 281, 1675
BanII GRGCYC 2 cut(s) 54, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 1044, 1076
BbsI GAAGAC 2 cut(s) 1485, 1596
Bbv12I GWGCWC 2 cut(s) 54, 1021
BbvI GCAGC 7 cut(s) 87, 559, 842, 1069, 1223, 1791, 1862
BccI CCATC 5 cut(s) 17, 63, 239, 1282, 1785
BcgI CGANNNNNNTGC 2 cut(s) 1394, 1428
BciT130I CCWGG 2 cut(s) 286, 1788
BcnI CCSGG 3 cut(s) 1180, 1181, 1732
BcoDI GTCTC 3 cut(s) 37, 123, 141
BfmI CTRYAG 5 cut(s) 66, 240, 502, 654, 2121
BisI GCNGC 9 cut(s) 101, 573, 831, 860, 1083, 1212, 1780, 1873, 1876
BlsI GCNGC 9 cut(s) 102, 574, 832, 861, 1084, 1213, 1781, 1874, 1877
BmcAI AGTACT 2 cut(s) 1337, 1393
Bme1390I CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
Bme18I GGWCC 4 cut(s) 110, 126, 171, 2181
BmeT110I CYCGRG 3 cut(s) 714, 1179, 1976
BmgT120I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
BmiI GGNNCC 6 cut(s) 128, 173, 283, 1263, 1677, 2182
BmrFI CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
BmsI GCATC 6 cut(s) 52, 956, 978, 1223, 1487, 2068
BpiI GAAGAC 2 cut(s) 1485, 1596
BpmI CTGGAG 1 cut(s) 1869
BpuEI CTTGAG 1 cut(s) 1090
BpuMI CCSGG 3 cut(s) 1180, 1181, 1732
BsaHI GRCGYC 1 cut(s) 250
BsaJI CCNNGG 8 cut(s) 122, 167, 285, 306, 777, 1179, 1180, 2022
BsaXI ACNNNNNCTCC 4 cut(s) 446, 476, 1842, 1872
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 291
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 1 cut(s) 199
Bse3DI GCAATG 4 cut(s) 708, 1038, 1452, 1605
BseBI CCWGG 2 cut(s) 286, 1788
BseDI CCNNGG 8 cut(s) 122, 167, 285, 306, 777, 1179, 1180, 2022
BseGI GGATG 7 cut(s) 901, 1140, 1478, 1630, 1796, 1810, 2074
BseLI CCNNNNNNNGG 2 cut(s) 260, 291
BseMI GCAATG 4 cut(s) 708, 1038, 1452, 1605
BseMII CTCAG 3 cut(s) 375, 804, 1371
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 7 cut(s) 87, 559, 842, 1069, 1223, 1791, 1862
BseYI CCCAGC 1 cut(s) 1224
BsgI GTGCAG 3 cut(s) 86, 96, 203
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 1056, 1730, 1786
BshNI GGYRCC 2 cut(s) 281, 1675
BsiHKAI GWGCWC 2 cut(s) 54, 1021
BsiHKCI CYCGRG 3 cut(s) 714, 1179, 1976
BsiSI CCGG 3 cut(s) 1057, 1180, 1732
BslFI GGGAC 3 cut(s) 112, 139, 157
BslI CCNNNNNNNGG 2 cut(s) 260, 291
BsmAI GTCTC 3 cut(s) 37, 123, 141
BsmFI GGGAC 3 cut(s) 112, 139, 157
BsmI GAATGC 2 cut(s) 226, 1417
BsnI GGCC 3 cut(s) 1056, 1730, 1786
BsoBI CYCGRG 3 cut(s) 714, 1179, 1976
Bsp1286I GDGCHC 2 cut(s) 54, 1021
Bsp143I GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
BspACI CCGC 5 cut(s) 98, 859, 862, 1551, 1873
BspANI GGCC 3 cut(s) 1056, 1730, 1786
BspCNI CTCAG 3 cut(s) 376, 805, 1370
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 6 cut(s) 128, 173, 283, 1263, 1677, 2182
BspMAI CTGCAG 2 cut(s) 658, 2125
BspPI GGATC 3 cut(s) 74, 605, 1458
BspT107I GGYRCC 2 cut(s) 281, 1675
BsrBI CCGCTC 1 cut(s) 859
BsrDI GCAATG 4 cut(s) 708, 1038, 1452, 1605
BsrFI RCCGGY 1 cut(s) 1056
BsrI ACTGG 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 8 cut(s) 122, 167, 285, 306, 777, 1179, 1180, 2022
BssMI GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
BssNI GRCGYC 1 cut(s) 250
BssT1I CCWWGG 4 cut(s) 122, 167, 777, 2022
Bst2UI CCWGG 2 cut(s) 286, 1788
Bst4CI ACNGT 7 cut(s) 314, 322, 424, 688, 889, 1194, 1391
Bst6I CTCTTC 4 cut(s) 800, 875, 1647, 1830
BstACI GRCGYC 1 cut(s) 250
BstAPI GCANNNNNTGC 2 cut(s) 596, 2120
BstC8I GCNNGC 7 cut(s) 961, 1017, 1047, 1058, 1784, 1870, 1895
BstDEI CTNAG 9 cut(s) 384, 479, 534, 813, 826, 906, 1206, 1357, 1754
BstF5I GGATG 7 cut(s) 901, 1140, 1478, 1630, 1796, 1810, 2074
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 6 cut(s) 82, 613, 1140, 1203, 1453, 1616
BstMAI GTCTC 3 cut(s) 37, 123, 141
BstMBI GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
BstMWI GCNNNNNNNGC 5 cut(s) 49, 223, 596, 1270, 2120
BstNI CCWGG 2 cut(s) 286, 1788
BstNSI RCATGY 2 cut(s) 1897, 2168
BstSCI CCNGG 5 cut(s) 284, 1178, 1179, 1730, 1786
BstSFI CTRYAG 5 cut(s) 66, 240, 502, 654, 2121
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 7 cut(s) 87, 559, 842, 1069, 1223, 1791, 1862
BstV2I GAAGAC 2 cut(s) 1485, 1596
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 3 cut(s) 1056, 1730, 1786
BtsCI GGATG 7 cut(s) 901, 1140, 1478, 1630, 1796, 1810, 2074
BtsI GCAGTG 3 cut(s) 358, 465, 1718
BtsIMutI CAGTG 7 cut(s) 25, 358, 465, 946, 1623, 1673, 1718
Cac8I GCNNGC 7 cut(s) 961, 1017, 1047, 1058, 1784, 1870, 1895
CfoI GCGC 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
Cfr9I CCCGGG 1 cut(s) 1179
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 1336, 1392
CspCI CAANNNNNGTGG 2 cut(s) 1629, 1664
CviAII CATG 8 cut(s) 218, 551, 842, 1001, 1879, 1894, 1910, 2165
CviQI GTAC 2 cut(s) 1336, 1392
DdeI CTNAG 9 cut(s) 384, 479, 534, 813, 826, 906, 1206, 1357, 1754
DpnI GATC 6 cut(s) 81, 612, 1139, 1202, 1452, 1615
DpnII GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
Eam1104I CTCTTC 4 cut(s) 800, 875, 1647, 1830
EarI CTCTTC 4 cut(s) 800, 875, 1647, 1830
Ecl136II GAGCTC 2 cut(s) 52, 1019
Eco130I CCWWGG 4 cut(s) 122, 167, 777, 2022
Eco147I AGGCCT 1 cut(s) 1786
Eco24I GRGCYC 2 cut(s) 54, 1021
Eco32I GATATC 1 cut(s) 1354
Eco47I GGWCC 4 cut(s) 110, 126, 171, 2181
Eco53kI GAGCTC 2 cut(s) 52, 1019
Eco57I CTGAAG 1 cut(s) 1071
Eco88I CYCGRG 3 cut(s) 714, 1179, 1976
EcoICRI GAGCTC 2 cut(s) 52, 1019
EcoO109I RGGNCCY 3 cut(s) 126, 171, 2181
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 2 cut(s) 284, 1786
EcoRV GATATC 1 cut(s) 1354
EcoT14I CCWWGG 4 cut(s) 122, 167, 777, 2022
EcoT22I ATGCAT 1 cut(s) 971
EcoT38I GRGCYC 2 cut(s) 54, 1021
ErhI CCWWGG 4 cut(s) 122, 167, 777, 2022
FaeI CATG 8 cut(s) 221, 554, 845, 1004, 1882, 1897, 1913, 2168
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 3 cut(s) 112, 139, 157
FatI CATG 8 cut(s) 217, 550, 841, 1000, 1878, 1893, 1909, 2164
Fnu4HI GCNGC 9 cut(s) 101, 573, 831, 860, 1083, 1212, 1780, 1873, 1876
FokI GGATG 7 cut(s) 908, 1147, 1465, 1637, 1803, 1817, 2081
FriOI GRGCYC 2 cut(s) 54, 1021
Fsp4HI GCNGC 9 cut(s) 101, 573, 831, 860, 1083, 1212, 1780, 1873, 1876
GlaI GCGC 1 cut(s) 216
GluI GCNGC 9 cut(s) 101, 573, 831, 860, 1083, 1212, 1780, 1873, 1876
GsaI CCCAGC 1 cut(s) 1228
GsuI CTGGAG 1 cut(s) 1869
HaeIII GGCC 3 cut(s) 1056, 1730, 1786
HapII CCGG 3 cut(s) 1057, 1180, 1732
HgaI GACGC 1 cut(s) 239
HhaI GCGC 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 8 cut(s) 221, 554, 845, 1004, 1882, 1897, 1913, 2168
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 1926
HpaII CCGG 3 cut(s) 1057, 1180, 1732
HphI GGTGA 1 cut(s) 956
Hpy166II GTNNAC 3 cut(s) 209, 325, 625
Hpy188I TCNGA 6 cut(s) 385, 1219, 1360, 1384, 1405, 1455
Hpy8I GTNNAC 3 cut(s) 209, 325, 625
Hpy99I CGWCG 1 cut(s) 2108
HpyAV CCTTC 6 cut(s) 811, 1046, 1085, 1306, 1462, 1876
HpyCH4III ACNGT 7 cut(s) 314, 322, 424, 688, 889, 1194, 1391
HpyCH4IV ACGT 1 cut(s) 2103
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 223, 596, 1270, 2120
HpyF3I CTNAG 9 cut(s) 384, 479, 534, 813, 826, 906, 1206, 1357, 1754
HpySE526I ACGT 1 cut(s) 2103
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 8 cut(s) 221, 554, 845, 1004, 1882, 1897, 1913, 2168
HspAI GCGC 1 cut(s) 215
KroI GCCGGC 1 cut(s) 1056
KroNI GCCGGC 1 cut(s) 1058
Kzo9I GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
LmnI GCTCC 5 cut(s) 49, 57, 1261, 1692, 1744
Lsp1109I GCAGC 7 cut(s) 87, 559, 842, 1069, 1223, 1791, 1862
LweI GCATC 6 cut(s) 52, 956, 978, 1223, 1487, 2068
MaeII ACGT 1 cut(s) 2103
MaeIII GTNAC 7 cut(s) 294, 332, 362, 944, 1248, 1716, 2167
MalI GATC 6 cut(s) 81, 612, 1139, 1202, 1452, 1615
MbiI CCGCTC 1 cut(s) 859
MboI GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 2 cut(s) 54, 1021
MluCI AATT 5 cut(s) 437, 641, 766, 916, 2090
MlyI GAGTC 5 cut(s) 320, 776, 1388, 1853, 1992
MmeI TCCRAC 1 cut(s) 2112
Mph1103I ATGCAT 1 cut(s) 971
MroNI GCCGGC 1 cut(s) 1056
MroXI GAANNNNTTC 1 cut(s) 2090
MseI TTAA 8 cut(s) 900, 1011, 1097, 1244, 1425, 1704, 1809, 2188
MslI CAYNNNNRTG 1 cut(s) 2006
MspA1I CMGCKG 3 cut(s) 100, 1511, 1875
MspI CCGG 3 cut(s) 1057, 1180, 1732
MspR9I CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
Mva1269I GAATGC 2 cut(s) 226, 1417
MvaI CCWGG 2 cut(s) 286, 1788
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 49, 223, 596, 1270, 2120
NaeI GCCGGC 1 cut(s) 1058
NciI CCSGG 3 cut(s) 1180, 1181, 1732
NdeII GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
NgoMIV GCCGGC 1 cut(s) 1056
NlaIII CATG 8 cut(s) 221, 554, 845, 1004, 1882, 1897, 1913, 2168
NlaIV GGNNCC 6 cut(s) 128, 173, 283, 1263, 1677, 2182
NmuCI GTSAC 5 cut(s) 332, 362, 944, 1248, 1716
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 2 cut(s) 1897, 2168
PaeI GCATGC 1 cut(s) 1897
PaeR7I CTCGAG 1 cut(s) 1976
PceI AGGCCT 1 cut(s) 1786
PciI ACATGT 1 cut(s) 2164
PcsI WCGNNNNNNNCGW 1 cut(s) 2100
PctI GAATGC 2 cut(s) 226, 1417
PdiI GCCGGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 2090
PfeI GAWTC 6 cut(s) 650, 1547, 1682, 1969, 2045, 2135
PkrI GCNGC 9 cut(s) 102, 574, 832, 861, 1084, 1213, 1781, 1874, 1877
PleI GAGTC 5 cut(s) 320, 776, 1387, 1852, 1992
PpsI GAGTC 5 cut(s) 320, 776, 1387, 1852, 1992
PpuMI RGGWCCY 3 cut(s) 126, 171, 2181
PscI ACATGT 1 cut(s) 2164
Psp124BI GAGCTC 2 cut(s) 54, 1021
Psp5II RGGWCCY 3 cut(s) 126, 171, 2181
Psp6I CCWGG 2 cut(s) 284, 1786
PspFI CCCAGC 1 cut(s) 1224
PspGI CCWGG 2 cut(s) 284, 1786
PspN4I GGNNCC 6 cut(s) 128, 173, 283, 1263, 1677, 2182
PspPI GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
PspPPI RGGWCCY 3 cut(s) 126, 171, 2181
PspXI VCTCGAGB 1 cut(s) 1976
PstI CTGCAG 2 cut(s) 658, 2125
PsuI RGATCY 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 1511
RsaI GTAC 2 cut(s) 1337, 1393
RsaNI GTAC 2 cut(s) 1336, 1392
RseI CAYNNNNRTG 1 cut(s) 2006
SacI GAGCTC 2 cut(s) 54, 1021
SaqAI TTAA 8 cut(s) 900, 1011, 1097, 1244, 1425, 1704, 1809, 2188
SatI GCNGC 9 cut(s) 101, 573, 831, 860, 1083, 1212, 1780, 1873, 1876
Sau3AI GATC 6 cut(s) 79, 610, 1137, 1200, 1450, 1613
Sau96I GGNCC 5 cut(s) 110, 126, 171, 1729, 2181
ScaI AGTACT 2 cut(s) 1337, 1393
SchI GAGTC 5 cut(s) 320, 776, 1388, 1853, 1992
ScrFI CCNGG 5 cut(s) 286, 1180, 1181, 1732, 1788
SduI GDGCHC 2 cut(s) 54, 1021
SfaNI GCATC 6 cut(s) 52, 956, 978, 1223, 1487, 2068
SfcI CTRYAG 5 cut(s) 66, 240, 502, 654, 2121
Sfr274I CTCGAG 1 cut(s) 1976
SinI GGWCC 4 cut(s) 110, 126, 171, 2181
SlaI CTCGAG 1 cut(s) 1976
SmaI CCCGGG 1 cut(s) 1181
SmiMI CAYNNNNRTG 1 cut(s) 2006
SmlI CTYRAG 2 cut(s) 1105, 1976
SmoI CTYRAG 2 cut(s) 1105, 1976
SphI GCATGC 1 cut(s) 1897
Sse9I AATT 5 cut(s) 437, 641, 766, 916, 2090
SseBI AGGCCT 1 cut(s) 1786
SsiI CCGC 5 cut(s) 98, 859, 862, 1551, 1873
SspI AATATT 1 cut(s) 1188
SstI GAGCTC 2 cut(s) 54, 1021
StuI AGGCCT 1 cut(s) 1786
StyD4I CCNGG 5 cut(s) 284, 1178, 1179, 1730, 1786
StyI CCWWGG 4 cut(s) 122, 167, 777, 2022
TaaI ACNGT 7 cut(s) 314, 322, 424, 688, 889, 1194, 1391
TaiI ACGT 1 cut(s) 2106
TaqI TCGA 4 cut(s) 855, 1140, 1977, 2106
TasI AATT 5 cut(s) 437, 641, 766, 916, 2090
TatI WGTACW 2 cut(s) 1335, 1391
TauI GCSGC 2 cut(s) 862, 1875
TfiI GAWTC 6 cut(s) 650, 1547, 1682, 1969, 2045, 2135
Tru1I TTAA 8 cut(s) 900, 1011, 1097, 1244, 1425, 1704, 1809, 2188
Tru9I TTAA 8 cut(s) 900, 1011, 1097, 1244, 1425, 1704, 1809, 2188
TscAI CASTG 7 cut(s) 25, 358, 472, 946, 1623, 1673, 1725
TseFI GTSAC 5 cut(s) 332, 362, 944, 1248, 1716
TseI GCWGC 7 cut(s) 100, 572, 830, 1082, 1211, 1779, 1875
Tsp45I GTSAC 5 cut(s) 332, 362, 944, 1248, 1716
TspGWI ACGGA 1 cut(s) 1471
TspMI CCCGGG 1 cut(s) 1179
TspRI CASTG 7 cut(s) 25, 358, 472, 946, 1623, 1673, 1725
VpaK11BI GGWCC 4 cut(s) 110, 126, 171, 2181
XapI RAATTY 1 cut(s) 437
XbaI TCTAGA 2 cut(s) 1375, 2050
XceI RCATGY 2 cut(s) 1897, 2168
XhoI CTCGAG 1 cut(s) 1976
XmaI CCCGGG 1 cut(s) 1179
XmnI GAANNNNTTC 1 cut(s) 2090
ZrmI AGTACT 2 cut(s) 1337, 1393
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.