Rmu_sc0003610.1_g000042

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
OG0000369
Physical Location & Seq
Reverse (-)
184581 .. 186013
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003610.1_g000042.1.cds

Sequence Viewer

Length: 1212 bp
atggaggcaggcgaagcagtaaaggtatcctcttctttggccgacaatcaagaccttgtaatagaaatcctctcacagttacctatcaaatctttagttaggtttatgtgtgtgtcgcaagagtggtctgctctcataaaaagctctcgtttcattgcaattcaccaaaaatgccttcaacgattgaatcctccgaatctctgtttactctacggtcacagttccggaagtagatatgctaaatatcccaagcaccatgggatttcattgcttggcaaagacacacatttggagggattagatctgcctgaacgtgtccagcaagactcttatgataggttgatacttattgcgggatctagcaatggtctagtctgcctttatcctcttaacactccaaaggagataatcgtcgtgtggaacccagcaacaagacagcataggtatcttcctaaaccattgtcttttaagggtaggaaggagacttctgatgctccactgttaggtttcggattcattaacgacaatggtaagtataatactgatttcaaagtcgtgaggatttcccacagcaaggatcgtgatgctgatggaaggtttacatacctaacccaagtcttcacccgaagtgaaaagtcatggagagaagttaaaaactgtattccaccaggcgattataactttgaaccaggctcttcaatttcttcgaatggtgtggtgtattgcttggcaaggactaagggtgttccttttgttttctccttctatctgcatgatgaggtaatccataacatgccaatgccgcctcgttacagtcttttttatggccaacgtctctttacgtgggaaaattcagttgcatttttaacccatgttgaacgtaagtatgatctttgggtgatggagaaagaatccgttgcatttttaacccatgttgaacatacgtatgatctttggttgatggagaaagaatccggtacacaaatgcctacttggaattggactgcgcaatttacaatcaaaaatctgccacaatttatggagttctgggatggtttatttctgtttgtcaaaaggcacgtcaaagctggacaagatctggtaacgtatgatcgagctacaaccggagcgatgaaggctttcaaacttgcaacagggaactcatgccttcaagtggtagattacgttcagagcttggtttcagtattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

403

Amino Acids

46.18

Weight (kDa)

8.66

Isoelectric Point (pI)

34.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
Acc16I TGCGCA 1 cut(s) 1008
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 2 cut(s) 353, 803
AclWI GGATC 2 cut(s) 364, 585
AcoI YGGCCR 2 cut(s) 39, 826
AcsI RAATTY 1 cut(s) 850
AfaI GTAC 1 cut(s) 979
AfiI CCNNNNNNNGG 3 cut(s) 503, 574, 1174
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 9 cut(s) 179, 187, 550, 686, 699, 878, 938, 1144, 1172
AjiI CACGTC 1 cut(s) 1081
AjnI CCWGG 2 cut(s) 667, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
AluBI AGCT 4 cut(s) 144, 1088, 1118, 1194
AluI AGCT 4 cut(s) 144, 1088, 1118, 1194
Alw26I GTCTC 2 cut(s) 476, 839
AlwI GGATC 2 cut(s) 364, 585
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 2 cut(s) 39, 826
ApoI RAATTY 1 cut(s) 850
ArsI GACNNNNNNTTYG 2 cut(s) 1065, 1097
Asp700I GAANNNNTTC 1 cut(s) 1139
AspLEI GCGC 1 cut(s) 1009
AsuHPI GGTGA 3 cut(s) 155, 613, 910
AsuII TTCGAA 1 cut(s) 707
BalI TGGCCA 1 cut(s) 828
BbsI GAAGAC 1 cut(s) 610
BccI CCATC 4 cut(s) 584, 895, 955, 1046
BciT130I CCWGG 2 cut(s) 669, 690
BciVI GTATCC 1 cut(s) 37
BcoDI GTCTC 2 cut(s) 476, 839
BfaI CTAG 2 cut(s) 360, 371
BfuI GTATCC 1 cut(s) 37
BglII AGATCT 2 cut(s) 301, 1096
BisI GCNGC 1 cut(s) 803
BlsI GCNGC 1 cut(s) 804
Bme1390I CCNGG 2 cut(s) 669, 690
BmgBI CACGTC 1 cut(s) 1081
BmiI GGNNCC 1 cut(s) 422
BmrFI CCNGG 2 cut(s) 669, 690
BmsI GCATC 2 cut(s) 481, 574
BpiI GAAGAC 1 cut(s) 610
Bpu14I TTCGAA 1 cut(s) 707
BsaAI YACGTR 2 cut(s) 843, 945
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 3 cut(s) 224, 974, 1124
Bsc4I CCNNNNNNNGG 3 cut(s) 503, 574, 1174
Bse3DI GCAATG 3 cut(s) 153, 266, 370
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 2 cut(s) 669, 690
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 1057
BseLI CCNNNNNNNGG 3 cut(s) 503, 574, 1174
BseMI GCAATG 3 cut(s) 153, 266, 370
BseYI CCCAGC 1 cut(s) 424
BshFI GGCC 2 cut(s) 41, 828
BsiSI CCGG 3 cut(s) 225, 975, 1125
BslI CCNNNNNNNGG 3 cut(s) 503, 574, 1174
BsmAI GTCTC 2 cut(s) 476, 839
BsmBI CGTCTC 1 cut(s) 839
BsnI GGCC 2 cut(s) 41, 828
Bsp119I TTCGAA 1 cut(s) 707
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 2 cut(s) 353, 803
BspANI GGCC 2 cut(s) 41, 828
BspEI TCCGGA 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 422
BspPI GGATC 2 cut(s) 364, 585
BspQI GCTCTTC 1 cut(s) 700
BspT104I TTCGAA 1 cut(s) 707
BsrDI GCAATG 3 cut(s) 153, 266, 370
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
BssT1I CCWWGG 1 cut(s) 256
Bst2UI CCWGG 2 cut(s) 669, 690
Bst4CI ACNGT 6 cut(s) 78, 215, 221, 501, 659, 815
Bst6I CTCTTC 2 cut(s) 37, 700
BstBAI YACGTR 2 cut(s) 843, 945
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 738
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 1057
BstHHI GCGC 1 cut(s) 1009
BstKTI GATC 7 cut(s) 304, 359, 580, 892, 952, 1099, 1114
BstMAI GTCTC 2 cut(s) 476, 839
BstMBI GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 14, 802, 1136
BstNI CCWGG 2 cut(s) 669, 690
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 667, 688
BstSNI TACGTA 1 cut(s) 945
BstV2I GAAGAC 1 cut(s) 610
BstX2I RGATCY 3 cut(s) 301, 356, 1096
BstYI RGATCY 3 cut(s) 301, 356, 1096
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 41, 828
BtgI CCRYGG 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 1145
BtrI CACGTC 1 cut(s) 1081
BtsCI GGATG 1 cut(s) 1057
BtsIMutI CAGTG 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 1 cut(s) 1009
Csp6I GTAC 1 cut(s) 978
CviAII CATG 7 cut(s) 257, 639, 773, 793, 872, 932, 1164
CviJI RGCY 8 cut(s) 41, 144, 693, 828, 1088, 1118, 1139, 1194
CviKI_1 RGCY 8 cut(s) 41, 144, 693, 828, 1088, 1118, 1139, 1194
CviQI GTAC 1 cut(s) 978
DdeI CTNAG 1 cut(s) 738
DpnI GATC 7 cut(s) 303, 358, 579, 891, 951, 1098, 1113
DpnII GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
EaeI YGGCCR 2 cut(s) 39, 826
Eam1104I CTCTTC 2 cut(s) 37, 700
EarI CTCTTC 2 cut(s) 37, 700
Eco105I TACGTA 1 cut(s) 945
Eco130I CCWWGG 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 667, 688
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 839
FaeI CATG 7 cut(s) 260, 642, 776, 796, 875, 935, 1167
FatI CATG 7 cut(s) 256, 638, 772, 792, 871, 931, 1163
FauI CCCGC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 803
FokI GGATG 1 cut(s) 1064
Fsp4HI GCNGC 1 cut(s) 803
FspBI CTAG 2 cut(s) 360, 371
FspI TGCGCA 1 cut(s) 1008
GlaI GCGC 1 cut(s) 1008
GluI GCNGC 1 cut(s) 803
GsaI CCCAGC 1 cut(s) 428
HaeIII GGCC 2 cut(s) 41, 828
HapII CCGG 3 cut(s) 225, 975, 1125
HhaI GCGC 1 cut(s) 1009
Hin1II CATG 7 cut(s) 260, 642, 776, 796, 875, 935, 1167
Hin6I GCGC 1 cut(s) 1007
HinP1I GCGC 1 cut(s) 1007
HinfI GANTC 6 cut(s) 187, 196, 326, 513, 911, 971
HpaII CCGG 3 cut(s) 225, 975, 1125
HphI GGTGA 3 cut(s) 155, 613, 910
Hpy166II GTNNAC 3 cut(s) 206, 600, 980
Hpy188I TCNGA 4 cut(s) 195, 490, 512, 1191
Hpy188III TCNNGA 4 cut(s) 50, 225, 556, 581
Hpy8I GTNNAC 3 cut(s) 206, 600, 980
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 6 cut(s) 185, 472, 588, 772, 1129, 1178
HpyCH4III ACNGT 6 cut(s) 78, 215, 221, 501, 659, 815
HpyCH4IV ACGT 8 cut(s) 313, 832, 842, 880, 944, 1080, 1106, 1185
HpyCH4V TGCA 5 cut(s) 158, 772, 860, 920, 1151
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 802, 1136
HpyF3I CTNAG 1 cut(s) 738
HpySE526I ACGT 8 cut(s) 313, 832, 842, 880, 944, 1080, 1106, 1185
Hsp92II CATG 7 cut(s) 260, 642, 776, 796, 875, 935, 1167
HspAI GCGC 1 cut(s) 1007
Kpn2I TCCGGA 1 cut(s) 224
Kzo9I GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
LguI GCTCTTC 1 cut(s) 700
LmnI GCTCC 2 cut(s) 499, 1127
LweI GCATC 2 cut(s) 481, 574
MaeI CTAG 2 cut(s) 360, 371
MaeII ACGT 8 cut(s) 313, 832, 842, 880, 944, 1080, 1106, 1185
MaeIII GTNAC 4 cut(s) 78, 215, 809, 1102
MalI GATC 7 cut(s) 303, 358, 579, 891, 951, 1098, 1113
MboI GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
MboII GAAGA 5 cut(s) 24, 440, 610, 687, 696
MflI RGATCY 3 cut(s) 301, 356, 1096
MlsI TGGCCA 1 cut(s) 828
MluCI AATT 6 cut(s) 159, 699, 850, 997, 1010, 1034
MluNI TGGCCA 1 cut(s) 828
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 8 cut(s) 40, 80, 201, 286, 396, 552, 772, 816
Mox20I TGGCCA 1 cut(s) 828
MroI TCCGGA 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 1139
MscI TGGCCA 1 cut(s) 828
MseI TTAA 6 cut(s) 390, 468, 519, 651, 866, 926
MslI CAYNNNNRTG 2 cut(s) 797, 945
Msp20I TGGCCA 1 cut(s) 828
MspI CCGG 3 cut(s) 225, 975, 1125
MspR9I CCNGG 2 cut(s) 669, 690
MvaI CCWGG 2 cut(s) 669, 690
MwoI GCNNNNNNNGC 3 cut(s) 14, 802, 1136
NcoI CCATGG 1 cut(s) 256
NdeII GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
NlaIII CATG 7 cut(s) 260, 642, 776, 796, 875, 935, 1167
NlaIV GGNNCC 1 cut(s) 422
NmuCI GTSAC 1 cut(s) 215
NsbI TGCGCA 1 cut(s) 1008
NspI RCATGY 1 cut(s) 796
NspV TTCGAA 1 cut(s) 707
PciSI GCTCTTC 1 cut(s) 700
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 5 cut(s) 187, 196, 513, 911, 971
PkrI GCNGC 1 cut(s) 804
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Ppu21I YACGTR 2 cut(s) 843, 945
PsiI TTATAA 1 cut(s) 678
Psp6I CCWGG 2 cut(s) 667, 688
PspFI CCCAGC 1 cut(s) 424
PspGI CCWGG 2 cut(s) 667, 688
PspN4I GGNNCC 1 cut(s) 422
PsrI GAACNNNNNNTAC 2 cut(s) 1170, 1202
PsuI RGATCY 3 cut(s) 301, 356, 1096
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
RseI CAYNNNNRTG 2 cut(s) 797, 945
SapI GCTCTTC 1 cut(s) 700
SaqAI TTAA 6 cut(s) 390, 468, 519, 651, 866, 926
SatI GCNGC 1 cut(s) 803
Sau3AI GATC 7 cut(s) 301, 356, 577, 889, 949, 1096, 1111
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 2 cut(s) 669, 690
SfaNI GCATC 2 cut(s) 481, 574
SfuI TTCGAA 1 cut(s) 707
SmiMI CAYNNNNRTG 2 cut(s) 797, 945
SnaBI TACGTA 1 cut(s) 945
Sse9I AATT 6 cut(s) 159, 699, 850, 997, 1010, 1034
SsiI CCGC 2 cut(s) 353, 803
SspMI CTAG 2 cut(s) 360, 371
StyD4I CCNGG 2 cut(s) 667, 688
StyI CCWWGG 1 cut(s) 256
TaaI ACNGT 6 cut(s) 78, 215, 221, 501, 659, 815
TaiI ACGT 8 cut(s) 316, 835, 845, 883, 947, 1083, 1109, 1188
TaqI TCGA 2 cut(s) 707, 1114
TasI AATT 6 cut(s) 159, 699, 850, 997, 1010, 1034
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 5 cut(s) 187, 196, 513, 911, 971
Tru1I TTAA 6 cut(s) 390, 468, 519, 651, 866, 926
Tru9I TTAA 6 cut(s) 390, 468, 519, 651, 866, 926
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 4 cut(s) 142, 255, 505, 1148
TspGWI ACGGA 1 cut(s) 904
TspRI CASTG 1 cut(s) 504
XapI RAATTY 1 cut(s) 850
XceI RCATGY 1 cut(s) 796
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 2 cut(s) 360, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.