FvH4_2g21221

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000369
Physical Location & Seq
Reverse (-)
17647795 .. 17648964
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g21221.t1

Sequence Viewer

Length: 1170 bp
ATGGAAGCTCGTTGTTTAAAAAGAATAAAAGCTGGAAGCTCTGATTTTGATGAAAGTGTTCTAGTAGAAATTCTCTCAAAACTGCCTCTCAAGTCTATATATAGATTTAGGTGTGTCTCAACAGAGTGGAATGCTCTCACTAGAACTTCTTATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGCCTTCTCCTCATCTCCTCCTCTTCTCCTGCTGATAAGAAATCAGCTGGAGTCTCATTACTTGCCGACGAAGAAGCAGCACTTTCAAGTTTGAACATACCTTTTCTCCCCAGCGATGCAAGATGGGATATAGGAGTTGTGGGATCTAGTAATGGGTTAGTTTGCTGCAATAAGATTCTTGATGGAAATGTATTGGCCACAATAGTATGGAACCCTGCAACACACCAATTTGATTATAATCCTCTTTCTCCTTTGGTGGAGGAACCTGAGAATGCTACTGACTATCCTCTGATCGGTTTTGATTTCATGCATAGCAGTAGTGTGTACAAATTGGTGGCAGTTGATCTGTATGGTAGTGATGATCCGGATGATCCCCTAAAAGTTTGTTTTAAAGCCGAAGTCTTCACCCAGGATACACCTTCTTGGAGAGTAGTTGAGTCGACACTTGGACTTGGATCATGTAAAATGTGTTATACTACTGTGTCGATTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCACACATCCAATGGATTTGCTGTCGTTTCGTTTCGTTTACATGATGAGGTCTTCGAGGATACATGTAAAGCACTACCGGAAGAAATACGCAATGTCAGTGACAATAGGATGCTCCCACTTTTATTTTCATGGAGAAACTCACTAGCAGTTGTAGGTTTCGATCAGAGTGACAACTTAGTGCTTTGGGTGGATGGCACTGCTGATCAAGAATGTGATTGGATTGAACAAATGAGATTCAAATGGCCGTCGCTATGTGAAGGAAGGTGGCTGCTCTTGAGAGGAGTTTGGAAGGATCAATTTGTTTTCAGAAAAAACGGATATGAATATGGTGATCACGATAATGAACCAGACAATCTGTTCTTGTTTGACCCTATAACTGAGACATTGAGGAAGTTGCATGCAGAAACAGACACTTGCTTTAAATATGCAGTAGGTTATGCAGAAAGTAATGTCCAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

390

Amino Acids

44.11

Weight (kDa)

4.88

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 53 9e-07 F-box domain
FBA_3 PF08268 62 - 370 6.1e-14 F-box associated beta propeller domain
FBA_1 PF07734 103 - 320 9.6e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 423
AccI GTMKAC 1 cut(s) 626
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 1 cut(s) 187
AclWI GGATC 5 cut(s) 337, 542, 551, 649, 1008
AcoI YGGCCR 2 cut(s) 381, 950
AcsI RAATTY 1 cut(s) 69
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 770
AgsI TTSAA 5 cut(s) 273, 280, 682, 932, 946
AjnI CCWGG 2 cut(s) 156, 594
AluBI AGCT 6 cut(s) 8, 32, 39, 180, 233, 1165
AluI AGCT 6 cut(s) 8, 32, 39, 180, 233, 1165
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 3 cut(s) 121, 244, 1082
AlwI GGATC 5 cut(s) 337, 542, 551, 649, 1008
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 2 cut(s) 381, 950
ApeKI GCWGC 3 cut(s) 263, 351, 976
ApoI RAATTY 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 583, 1049
BalI TGGCCA 1 cut(s) 383
BbsI GAAGAC 3 cut(s) 164, 580, 751
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 3 cut(s) 275, 338, 963
BccI CCATC 3 cut(s) 303, 362, 893
BceAI ACGGC 1 cut(s) 937
BciT130I CCWGG 2 cut(s) 158, 596
BciVI GTATCC 2 cut(s) 592, 760
BclI TGATCA 2 cut(s) 910, 1039
BcoDI GTCTC 3 cut(s) 121, 244, 1082
BfaI CTAG 4 cut(s) 62, 141, 333, 851
BfuI GTATCC 2 cut(s) 592, 760
BisI GCNGC 4 cut(s) 187, 264, 352, 977
BlsI GCNGC 4 cut(s) 188, 265, 353, 978
Bme1390I CCNGG 2 cut(s) 158, 596
BmiI GGNNCC 2 cut(s) 398, 450
BmrFI CCNGG 2 cut(s) 158, 596
BmsI GCATC 2 cut(s) 292, 807
BpiI GAAGAC 3 cut(s) 164, 580, 751
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 2 cut(s) 74, 1003
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 1 cut(s) 594
BsaWI WCCGGW 2 cut(s) 550, 784
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse3DI GCAATG 1 cut(s) 805
Bse8I GATNNNNATC 1 cut(s) 423
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 2 cut(s) 158, 596
BseDI CCNNGG 1 cut(s) 594
BseGI GGATG 4 cut(s) 559, 713, 822, 904
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 1 cut(s) 805
BseMII CTCAG 2 cut(s) 444, 1077
BseRI GAGGAG 4 cut(s) 185, 193, 196, 1002
BseXI GCAGC 3 cut(s) 275, 338, 963
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 2 cut(s) 383, 952
BsiHKAI GWGCWC 1 cut(s) 711
BsiSI CCGG 2 cut(s) 551, 785
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 3 cut(s) 121, 244, 1082
BsmI GAATGC 2 cut(s) 136, 463
BsnI GGCC 2 cut(s) 383, 952
Bsp1286I GDGCHC 1 cut(s) 711
Bsp13I TCCGGA 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 510
BspACI CCGC 1 cut(s) 187
BspANI GGCC 2 cut(s) 383, 952
BspCNI CTCAG 2 cut(s) 445, 1078
BspEI TCCGGA 1 cut(s) 550
BspLI GGNNCC 2 cut(s) 398, 450
BspPI GGATC 5 cut(s) 337, 542, 551, 649, 1008
BsrDI GCAATG 1 cut(s) 805
BsrGI TGTACA 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 594
Bst2UI CCWGG 2 cut(s) 158, 596
Bst4CI ACNGT 1 cut(s) 667
Bst6I CTCTTC 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 510
BstC8I GCNNGC 1 cut(s) 1107
BstDEI CTNAG 3 cut(s) 453, 883, 1086
BstF5I GGATG 4 cut(s) 559, 713, 822, 904
BstMAI GTCTC 3 cut(s) 121, 244, 1082
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstNI CCWGG 2 cut(s) 158, 596
BstNSI RCATGY 2 cut(s) 774, 1109
BstSCI CCNGG 2 cut(s) 156, 594
BstV1I GCAGC 3 cut(s) 275, 338, 963
BstV2I GAAGAC 3 cut(s) 164, 580, 751
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
BsuI GTATCC 2 cut(s) 592, 760
BsuRI GGCC 2 cut(s) 383, 952
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 4 cut(s) 559, 713, 822, 904
BtsI GCAGTG 1 cut(s) 903
BtsIMutI CAGTG 2 cut(s) 811, 903
Cac8I GCNNGC 1 cut(s) 1107
Csp6I GTAC 1 cut(s) 511
CviAII CATG 6 cut(s) 493, 645, 749, 771, 837, 1106
CviQI GTAC 1 cut(s) 511
DdeI CTNAG 3 cut(s) 453, 883, 1086
DraI TTTAAA 3 cut(s) 18, 577, 1129
EaeI YGGCCR 2 cut(s) 381, 950
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 156, 594
EcoT22I ATGCAT 1 cut(s) 498
FaeI CATG 6 cut(s) 496, 648, 752, 774, 840, 1109
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 6 cut(s) 492, 644, 748, 770, 836, 1105
FbaI TGATCA 2 cut(s) 910, 1039
FblI GTMKAC 1 cut(s) 626
Fnu4HI GCNGC 4 cut(s) 187, 264, 352, 977
FokI GGATG 4 cut(s) 566, 700, 829, 911
Fsp4HI GCNGC 4 cut(s) 187, 264, 352, 977
FspBI CTAG 4 cut(s) 62, 141, 333, 851
GluI GCNGC 4 cut(s) 187, 264, 352, 977
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 383, 952
HapII CCGG 2 cut(s) 551, 785
Hin1II CATG 6 cut(s) 496, 648, 752, 774, 840, 1109
HincII GTYRAC 1 cut(s) 627
HindII GTYRAC 1 cut(s) 627
HinfI GANTC 4 cut(s) 237, 361, 623, 942
HpaII CCGG 2 cut(s) 551, 785
HphI GGTGA 2 cut(s) 583, 1049
Hpy166II GTNNAC 3 cut(s) 511, 627, 746
Hpy188I TCNGA 4 cut(s) 43, 477, 873, 1016
Hpy188III TCNNGA 5 cut(s) 365, 551, 914, 982, 1043
Hpy8I GTNNAC 3 cut(s) 511, 627, 746
Hpy99I CGWCG 2 cut(s) 257, 958
HpyAV CCTTC 5 cut(s) 200, 615, 959, 963, 991
HpyCH4III ACNGT 1 cut(s) 667
HpyCH4V TGCA 8 cut(s) 305, 354, 404, 496, 1105, 1109, 1136, 1148
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 3 cut(s) 453, 883, 1086
Hsp92II CATG 6 cut(s) 496, 648, 752, 774, 840, 1109
Kpn2I TCCGGA 1 cut(s) 550
Ksp22I TGATCA 2 cut(s) 910, 1039
LmnI GCTCC 1 cut(s) 825
Lsp1109I GCAGC 3 cut(s) 275, 338, 963
LweI GCATC 2 cut(s) 292, 807
MaeI CTAG 4 cut(s) 62, 141, 333, 851
MaeIII GTNAC 2 cut(s) 806, 875
MboII GAAGA 6 cut(s) 164, 201, 269, 580, 751, 800
MflI RGATCY 1 cut(s) 329
MhlI GDGCHC 1 cut(s) 711
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 4 cut(s) 69, 413, 515, 1004
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 2 cut(s) 246, 632
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 498
MroI TCCGGA 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 57
MscI TGGCCA 1 cut(s) 383
MseI TTAA 4 cut(s) 17, 576, 1128, 1168
MslI CAYNNNNRTG 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 2 cut(s) 551, 785
MspR9I CCNGG 2 cut(s) 158, 596
Mva1269I GAATGC 2 cut(s) 136, 463
MvaI CCWGG 2 cut(s) 158, 596
MwoI GCNNNNNNNGC 1 cut(s) 186
NlaIII CATG 6 cut(s) 496, 648, 752, 774, 840, 1109
NlaIV GGNNCC 2 cut(s) 398, 450
NmuCI GTSAC 2 cut(s) 806, 875
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 2 cut(s) 774, 1109
PaeI GCATGC 1 cut(s) 1109
PciI ACATGT 1 cut(s) 770
PctI GAATGC 2 cut(s) 136, 463
PdmI GAANNNNTTC 1 cut(s) 57
PfeI GAWTC 2 cut(s) 361, 942
PflFI GACNNNGTC 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 4 cut(s) 188, 265, 353, 978
PleI GAGTC 2 cut(s) 245, 631
PpsI GAGTC 2 cut(s) 245, 631
PscI ACATGT 1 cut(s) 770
PsiI TTATAA 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 156, 594
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 156, 594
PspN4I GGNNCC 2 cut(s) 398, 450
PsuI RGATCY 1 cut(s) 329
PsyI GACNNNGTC 1 cut(s) 168
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
RseI CAYNNNNRTG 1 cut(s) 1047
SalI GTCGAC 1 cut(s) 625
SaqAI TTAA 4 cut(s) 17, 576, 1128, 1168
SatI GCNGC 4 cut(s) 187, 264, 352, 977
SchI GAGTC 2 cut(s) 246, 632
ScrFI CCNGG 2 cut(s) 158, 596
SduI GDGCHC 1 cut(s) 711
SfaNI GCATC 2 cut(s) 292, 807
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 2 cut(s) 89, 982
SmoI CTYRAG 2 cut(s) 89, 982
SphI GCATGC 1 cut(s) 1109
Sse9I AATT 4 cut(s) 69, 413, 515, 1004
SsiI CCGC 1 cut(s) 187
SspMI CTAG 4 cut(s) 62, 141, 333, 851
StyD4I CCNGG 2 cut(s) 156, 594
TaaI ACNGT 1 cut(s) 667
TaqI TCGA 4 cut(s) 626, 671, 762, 867
TasI AATT 4 cut(s) 69, 413, 515, 1004
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 2 cut(s) 361, 942
Tru1I TTAA 4 cut(s) 17, 576, 1128, 1168
Tru9I TTAA 4 cut(s) 17, 576, 1128, 1168
TscAI CASTG 2 cut(s) 811, 910
TseFI GTSAC 2 cut(s) 806, 875
TseI GCWGC 3 cut(s) 263, 351, 976
Tsp45I GTSAC 2 cut(s) 806, 875
TspDTI ATGAA 5 cut(s) 66, 481, 825, 1044, 1065
TspGWI ACGGA 1 cut(s) 1038
TspRI CASTG 2 cut(s) 811, 910
Tth111I GACNNNGTC 1 cut(s) 168
XapI RAATTY 1 cut(s) 69
XceI RCATGY 2 cut(s) 774, 1109
XmiI GTMKAC 1 cut(s) 626
XmnI GAANNNNTTC 1 cut(s) 57
XspI CTAG 4 cut(s) 62, 141, 333, 851
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.