RLG00000017037

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000369
Physical Location & Seq
Forward (+)
12324311 .. 12325407
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017037

Sequence Viewer

Length: 681 bp
ATGGAAATCATAGGAGGAAGCGAAGTAAAGGTAAGAAGCACTTATCTTACTGATGATGTTTTAGTAGAAATACTGTCAAGATTAGCAGTGAAGTCTTTACTTAGGTTTATGTGTGTATCAAAGGAGTGGCATGCTCTCACAAAAAGCTCTTATTTCACTGCCATTCATCTTGAACGCTCGGATCGCAACCTCTCCCTTGTCTTTAAGAGGTTTTCTTCAATCACCTTGAACGGGGTGCTGTATTCGCCTCTGCAGATAGAGCATCGAGTATCCCATGTCTTGTCATTCAATTTGCGCTATGAGGTCTTCCATGTGATACCATTACCAGAGAGCATTAGTCGAACAAGTGCACTCTTTTCATGGAAAAATTCATTGGCATTTCTAGGAGGTCATGAACAAGAACCAGACTGTGAGCTTTGGATGATGACTGAGGAGCCTTCTGCTACTACACGAATGCCTTCGGTTAAACAGCTTATCCTCAAACCCTCATCACTGTCAAGATATATCTTTGGATCTTGGAAGGATGAATATCTTTTATGGAGAGATACGAATGATGAAGACCTGCATTTTTACGATCCTACGAGCCAGAAATTGACAAAGCTTCCACAACATGATCAAACACATGGTTACAGATATGATCAAGCAATCAACTATGTGGAGAGCCTAGTTTCAGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

227

Amino Acids

26.25

Weight (kDa)

6.14

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 52 7.3e-09 F-box domain
F-box-like PF12937 18 - 50 2.1e-06 F-box-like
FBA_3 PF08268 72 - 144 2.2e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 570
AccI GTMKAC 1 cut(s) 675
AclWI GGATC 3 cut(s) 189, 520, 569
AcsI RAATTY 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 4 cut(s) 173, 219, 229, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 356, 388
AluBI AGCT 4 cut(s) 147, 415, 472, 601
AluI AGCT 4 cut(s) 147, 415, 472, 601
Alw21I GWGCWC 1 cut(s) 352
Alw44I GTGCAC 1 cut(s) 348
AlwI GGATC 3 cut(s) 189, 520, 569
ApaLI GTGCAC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 457
AspLEI GCGC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 352
BbsI GAAGAC 2 cut(s) 298, 564
Bbv12I GWGCWC 1 cut(s) 352
BciVI GTATCC 1 cut(s) 280
BclI TGATCA 2 cut(s) 613, 637
BfaI CTAG 2 cut(s) 383, 665
BfmI CTRYAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 570
BfuI GTATCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 435
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 2 cut(s) 298, 564
BsaBI GATNNNNATC 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 528
BseGI GGATG 2 cut(s) 426, 529
BseJI GATNNNNATC 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 420
BseRI GAGGAG 1 cut(s) 446
BseSI GKGCMC 1 cut(s) 352
BsiHKAI GWGCWC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 231
BsmI GAATGC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 352
Bsp143I GATC 5 cut(s) 181, 512, 574, 613, 637
BspCNI CTCAG 1 cut(s) 421
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 570
BspPI GGATC 3 cut(s) 189, 520, 569
BssMI GATC 5 cut(s) 181, 512, 574, 613, 637
Bst4CI ACNGT 3 cut(s) 75, 410, 495
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 2 cut(s) 101, 429
BstF5I GGATG 2 cut(s) 426, 529
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 5 cut(s) 184, 515, 577, 616, 640
BstMBI GATC 5 cut(s) 181, 512, 574, 613, 637
BstMWI GCNNNNNNNGC 3 cut(s) 183, 244, 259
BstNSI RCATGY 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 251
BstSLI GKGCMC 1 cut(s) 352
BstV2I GAAGAC 2 cut(s) 298, 564
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuI GTATCC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 426, 529
BtsI GCAGTG 2 cut(s) 93, 156
BtsIMutI CAGTG 3 cut(s) 93, 156, 491
BveI ACCTGC 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 297
CviAII CATG 7 cut(s) 131, 275, 311, 360, 392, 611, 623
CviJI RGCY 7 cut(s) 147, 415, 436, 472, 585, 601, 663
CviKI_1 RGCY 7 cut(s) 147, 415, 436, 472, 585, 601, 663
DdeI CTNAG 2 cut(s) 101, 429
DpnI GATC 5 cut(s) 183, 514, 576, 615, 639
DpnII GATC 5 cut(s) 181, 512, 574, 613, 637
FaeI CATG 7 cut(s) 134, 278, 314, 363, 395, 614, 626
FalI AAGNNNNNCTT 2 cut(s) 25, 57
FatI CATG 7 cut(s) 130, 274, 310, 359, 391, 610, 622
FbaI TGATCA 2 cut(s) 613, 637
FblI GTMKAC 1 cut(s) 675
FokI GGATG 2 cut(s) 433, 536
FspBI CTAG 2 cut(s) 383, 665
GlaI GCGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 297
Hin1II CATG 7 cut(s) 134, 278, 314, 363, 395, 614, 626
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HindIII AAGCTT 1 cut(s) 599
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 350, 676
Hpy188I TCNGA 1 cut(s) 181
Hpy188III TCNNGA 4 cut(s) 78, 170, 392, 498
Hpy8I GTNNAC 2 cut(s) 350, 676
HpyAV CCTTC 3 cut(s) 447, 468, 514
HpyCH4III ACNGT 3 cut(s) 75, 410, 495
HpyCH4V TGCA 3 cut(s) 253, 350, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 244, 259
HpyF3I CTNAG 2 cut(s) 101, 429
Hsp92II CATG 7 cut(s) 134, 278, 314, 363, 395, 614, 626
HspAI GCGC 1 cut(s) 295
Ksp22I TGATCA 2 cut(s) 613, 637
Kzo9I GATC 5 cut(s) 181, 512, 574, 613, 637
LmnI GCTCC 1 cut(s) 433
LpnPI CCDG 4 cut(s) 339, 417, 575, 599
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 383, 665
MaeIII GTNAC 1 cut(s) 626
MalI GATC 5 cut(s) 183, 514, 576, 615, 639
MboI GATC 5 cut(s) 181, 512, 574, 613, 637
MboII GAAGA 3 cut(s) 207, 298, 569
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 352
MluCI AATT 3 cut(s) 289, 367, 590
MnlI CCTC 9 cut(s) 8, 200, 201, 258, 295, 380, 424, 488, 496
MroXI GAANNNNTTC 1 cut(s) 457
MseI TTAA 2 cut(s) 204, 465
Mva1269I GAATGC 1 cut(s) 459
MwoI GCNNNNNNNGC 3 cut(s) 183, 244, 259
NdeII GATC 5 cut(s) 181, 512, 574, 613, 637
NlaIII CATG 7 cut(s) 134, 278, 314, 363, 395, 614, 626
NlaIV GGNNCC 1 cut(s) 435
NspI RCATGY 1 cut(s) 134
PaeI GCATGC 1 cut(s) 134
PagI TCATGA 1 cut(s) 391
PctI GAATGC 1 cut(s) 459
PdmI GAANNNNTTC 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 435
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 512
SaqAI TTAA 2 cut(s) 204, 465
Sau3AI GATC 5 cut(s) 181, 512, 574, 613, 637
SduI GDGCHC 1 cut(s) 352
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 251
SphI GCATGC 1 cut(s) 134
Sse9I AATT 3 cut(s) 289, 367, 590
SspMI CTAG 2 cut(s) 383, 665
TaaI ACNGT 3 cut(s) 75, 410, 495
TaqI TCGA 2 cut(s) 265, 340
TasI AATT 3 cut(s) 289, 367, 590
Tru1I TTAA 2 cut(s) 204, 465
Tru9I TTAA 2 cut(s) 204, 465
TscAI CASTG 3 cut(s) 93, 163, 498
TspDTI ATGAA 6 cut(s) 155, 348, 360, 408, 540, 570
TspRI CASTG 3 cut(s) 93, 163, 498
VneI GTGCAC 1 cut(s) 348
XapI RAATTY 1 cut(s) 367
XceI RCATGY 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 457
XspI CTAG 2 cut(s) 383, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.