Rmu_sc0015519.1_g000001

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015519.1
OG0000369
Physical Location & Seq
Forward (+)
480 .. 1610
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015519.1_g000001.1.cds

Sequence Viewer

Length: 1131 bp
atggaaactagtagaagcaaagttgttaaggtgagcgatactttaacactaggtctgcaggaagatgtcctagtagaaattctctcatatctgcctgtcaagtctttacttaggtttcgttgcgtatcgcaagagtggtatgctctcaccaaaagtccttatttcatttccagacaccttgtgcatcgctctagatgctctaatccacatcatccttgtcttctctttctctcgcgtctagctggaagttctgaaaataatttcaaaccactacttggattctcattgcttggagatgaagaaacaacgtttttgagattacctttctggaaccttattacaagccaaagaaggggtggtttatggcttgtgggatctagtaatggcctggtttgctgtgttctgttaattgggattgagaatgataagaatagaactacagagggtgaagaaaataatgctactgtgttccaacaattaatagtagtatggaacccagcaacagaacgatttaggtttcttcctaaacctaataataatattcctttggatcaggacgaggaggaggatatactacgtgtaaaggacaactctttgtcctgtcctcttataggttttgatttcgtacatgatcatgacattactgaatataaactggtcagagttttccatcatgatagtgatgatccctacgatcatggcaaagtacttacaacttttcgagctcaagtcttcgtccaaagcacaaattcttggagacaagccaagaacgagttagggtttccatcatgtgaaaattcttttgcatcaacttcgattacattgaatggagtgctgtattggaaggtacagcgagcaggggacgagtgctgtgttctgtcattcaatttacgtgaggaggttttcaatgtgatacagctaccaatggatctacgaaatcatgatgattggggcggactccaattatattcatggagaaattcaccggcgactgtagcacttgattattcggccaatgacgatctcagcgcagcgctttgggtgatgagtactgatcaattagcaatacccaaggaaccagcaaaacaacccatacaattacccaagtggtcacgaaaaatacctccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

376

Amino Acids

42.97

Weight (kDa)

5.84

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 1 cut(s) 235
AciI CCGC 1 cut(s) 954
AclI AACGTT 1 cut(s) 308
AclWI GGATC 4 cut(s) 382, 558, 680, 936
AcoI YGGCCR 1 cut(s) 1011
AcsI RAATTY 4 cut(s) 78, 748, 796, 979
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 4 cut(s) 627, 708, 849, 1051
AfeI AGCGCT 1 cut(s) 1035
AfiI CCNNNNNNNGG 3 cut(s) 275, 352, 611
AflIII ACRYGT 1 cut(s) 577
AgsI TTSAA 4 cut(s) 265, 826, 886, 907
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 1 cut(s) 387
AluBI AGCT 3 cut(s) 242, 725, 919
AluI AGCT 3 cut(s) 242, 725, 919
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 1 cut(s) 751
AlwI GGATC 4 cut(s) 382, 558, 680, 936
Aor51HI AGCGCT 1 cut(s) 1035
AoxI GGCC 2 cut(s) 385, 1011
ApeKI GCWGC 1 cut(s) 1031
ApoI RAATTY 4 cut(s) 78, 748, 796, 979
AseI ATTAAT 1 cut(s) 479
AspLEI GCGC 2 cut(s) 1031, 1036
AsuHPI GGTGA 5 cut(s) 43, 139, 458, 975, 1054
BanII GRGCYC 1 cut(s) 727
BbsI GAAGAC 2 cut(s) 212, 724
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 1 cut(s) 1043
BccI CCATC 2 cut(s) 678, 793
BcgI CGANNNNNNTGC 2 cut(s) 795, 829
BciT130I CCWGG 1 cut(s) 389
BclI TGATCA 2 cut(s) 631, 1054
BcoDI GTCTC 1 cut(s) 751
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 6 cut(s) 9, 50, 71, 192, 239, 378
BfmI CTRYAG 3 cut(s) 56, 438, 993
BfoI RGCGCY 1 cut(s) 1037
BisI GCNGC 1 cut(s) 1032
BlsI GCNGC 1 cut(s) 1033
BmcAI AGTACT 2 cut(s) 708, 1051
Bme1390I CCNGG 1 cut(s) 389
BmiI GGNNCC 3 cut(s) 332, 494, 1077
BmrFI CCNGG 1 cut(s) 389
BmsI GCATC 3 cut(s) 185, 193, 815
BpiI GAAGAC 2 cut(s) 212, 724
BpuEI CTTGAG 1 cut(s) 711
BsaAI YACGTR 2 cut(s) 578, 893
BsaJI CCNNGG 1 cut(s) 1071
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 352, 611
Bse118I RCCGGY 1 cut(s) 985
Bse1I ACTGG 1 cut(s) 660
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 389
BseDI CCNNGG 1 cut(s) 1071
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 275, 352, 611
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 1039
BseNI ACTGG 1 cut(s) 660
BseRI GAGGAG 3 cut(s) 575, 578, 911
BseXI GCAGC 1 cut(s) 1043
BseYI CCCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 2 cut(s) 387, 1013
BsiHKAI GWGCWC 1 cut(s) 727
BsiSI CCGG 1 cut(s) 986
BslFI GGGAC 1 cut(s) 875
BslI CCNNNNNNNGG 3 cut(s) 275, 352, 611
BsmAI GTCTC 1 cut(s) 751
BsmFI GGGAC 1 cut(s) 875
BsnI GGCC 2 cut(s) 387, 1013
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
BspACI CCGC 1 cut(s) 954
BspANI GGCC 2 cut(s) 387, 1013
BspCNI CTCAG 1 cut(s) 1038
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 3 cut(s) 634, 673, 940
BspLI GGNNCC 3 cut(s) 332, 494, 1077
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 4 cut(s) 382, 558, 680, 936
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 985
BsrI ACTGG 1 cut(s) 660
BssAI RCCGGY 1 cut(s) 985
BssECI CCNNGG 1 cut(s) 1071
BssMI GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
BssT1I CCWWGG 1 cut(s) 1071
Bst2UI CCWGG 1 cut(s) 389
Bst4CI ACNGT 2 cut(s) 466, 994
BstBAI YACGTR 2 cut(s) 578, 893
BstC8I GCNNGC 1 cut(s) 855
BstDEI CTNAG 2 cut(s) 110, 1025
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 235
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 2 cut(s) 1031, 1036
BstKTI GATC 8 cut(s) 377, 553, 634, 688, 697, 931, 1024, 1057
BstMAI GTCTC 1 cut(s) 751
BstMBI GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
BstMWI GCNNNNNNNGC 3 cut(s) 195, 393, 995
BstNI CCWGG 1 cut(s) 389
BstSCI CCNGG 1 cut(s) 387
BstSFI CTRYAG 3 cut(s) 56, 438, 993
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 1043
BstV2I GAAGAC 2 cut(s) 212, 724
BstX2I RGATCY 2 cut(s) 374, 928
BstYI RGATCY 2 cut(s) 374, 928
BsuRI GGCC 2 cut(s) 387, 1013
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 855
CciI TCATGA 3 cut(s) 634, 673, 940
CfoI GCGC 2 cut(s) 1031, 1036
Cfr10I RCCGGY 1 cut(s) 985
CseI GACGC 1 cut(s) 224
Csp6I GTAC 4 cut(s) 626, 707, 848, 1050
CviAII CATG 7 cut(s) 629, 635, 674, 698, 789, 941, 972
CviJI RGCY 8 cut(s) 242, 345, 367, 387, 725, 764, 919, 1013
CviKI_1 RGCY 8 cut(s) 242, 345, 367, 387, 725, 764, 919, 1013
CviQI GTAC 4 cut(s) 626, 707, 848, 1050
DdeI CTNAG 2 cut(s) 110, 1025
DpnI GATC 8 cut(s) 376, 552, 633, 687, 696, 930, 1023, 1056
DpnII GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 1011
EciI GGCGGA 1 cut(s) 969
Ecl136II GAGCTC 1 cut(s) 725
Eco130I CCWWGG 1 cut(s) 1071
Eco24I GRGCYC 1 cut(s) 727
Eco47III AGCGCT 1 cut(s) 1035
Eco53kI GAGCTC 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 725
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoRII CCWGG 1 cut(s) 387
EcoT14I CCWWGG 1 cut(s) 1071
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 1071
FaeI CATG 7 cut(s) 632, 638, 677, 701, 792, 944, 975
FaqI GGGAC 1 cut(s) 875
FatI CATG 7 cut(s) 628, 634, 673, 697, 788, 940, 971
FbaI TGATCA 2 cut(s) 631, 1054
Fnu4HI GCNGC 1 cut(s) 1032
FokI GGATG 1 cut(s) 198
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 1 cut(s) 1032
FspBI CTAG 6 cut(s) 9, 50, 71, 192, 239, 378
GlaI GCGC 2 cut(s) 1030, 1035
GluI GCNGC 1 cut(s) 1032
GsaI CCCAGC 1 cut(s) 500
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 2 cut(s) 387, 1013
HapII CCGG 1 cut(s) 986
HgaI GACGC 1 cut(s) 224
HhaI GCGC 2 cut(s) 1031, 1036
Hin1II CATG 7 cut(s) 632, 638, 677, 701, 792, 944, 975
Hin6I GCGC 2 cut(s) 1029, 1034
HinP1I GCGC 2 cut(s) 1029, 1034
HinfI GANTC 2 cut(s) 279, 957
HpaII CCGG 1 cut(s) 986
HphI GGTGA 5 cut(s) 43, 139, 458, 975, 1054
Hpy188I TCNGA 2 cut(s) 253, 662
Hpy188III TCNNGA 8 cut(s) 171, 192, 328, 554, 635, 674, 941, 1113
HpyAV CCTTC 2 cut(s) 345, 838
HpyCH4III ACNGT 2 cut(s) 466, 994
HpyCH4IV ACGT 3 cut(s) 308, 577, 892
HpyCH4V TGCA 3 cut(s) 58, 184, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 393, 995
HpyF3I CTNAG 2 cut(s) 110, 1025
HpySE526I ACGT 3 cut(s) 308, 577, 892
Hsp92II CATG 7 cut(s) 632, 638, 677, 701, 792, 944, 975
HspAI GCGC 2 cut(s) 1029, 1034
Ksp22I TGATCA 2 cut(s) 631, 1054
Kzo9I GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
Lsp1109I GCAGC 1 cut(s) 1043
LweI GCATC 3 cut(s) 185, 193, 815
MaeI CTAG 6 cut(s) 9, 50, 71, 192, 239, 378
MaeII ACGT 3 cut(s) 308, 577, 892
MaeIII GTNAC 1 cut(s) 1110
MalI GATC 8 cut(s) 376, 552, 633, 687, 696, 930, 1023, 1056
MboI GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
MboII GAAGA 6 cut(s) 74, 212, 311, 461, 512, 724
MflI RGATCY 2 cut(s) 374, 928
MhlI GDGCHC 1 cut(s) 727
MlyI GAGTC 1 cut(s) 951
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 7 cut(s) 436, 553, 556, 559, 615, 889, 892
MseI TTAA 4 cut(s) 27, 44, 407, 479
MslI CAYNNNNRTG 2 cut(s) 633, 678
MspI CCGG 1 cut(s) 986
MspR9I CCNGG 1 cut(s) 389
MteI GCGCNGCGC 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 389
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 195, 393, 995
NdeII GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
NlaIII CATG 7 cut(s) 632, 638, 677, 701, 792, 944, 975
NlaIV GGNNCC 3 cut(s) 332, 494, 1077
NmuCI GTSAC 1 cut(s) 1110
PagI TCATGA 3 cut(s) 634, 673, 940
PfeI GAWTC 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 1033
PleI GAGTC 1 cut(s) 951
PpsI GAGTC 1 cut(s) 951
Ppu21I YACGTR 2 cut(s) 578, 893
PshBI ATTAAT 1 cut(s) 479
Psp124BI GAGCTC 1 cut(s) 727
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 1 cut(s) 387
PspFI CCCAGC 1 cut(s) 496
PspGI CCWGG 1 cut(s) 387
PspN4I GGNNCC 3 cut(s) 332, 494, 1077
PstI CTGCAG 1 cut(s) 60
PsuI RGATCY 2 cut(s) 374, 928
RsaI GTAC 4 cut(s) 627, 708, 849, 1051
RsaNI GTAC 4 cut(s) 626, 707, 848, 1050
RseI CAYNNNNRTG 2 cut(s) 633, 678
SacI GAGCTC 1 cut(s) 727
SaqAI TTAA 4 cut(s) 27, 44, 407, 479
SatI GCNGC 1 cut(s) 1032
Sau3AI GATC 8 cut(s) 374, 550, 631, 685, 694, 928, 1021, 1054
ScaI AGTACT 2 cut(s) 708, 1051
SchI GAGTC 1 cut(s) 951
ScrFI CCNGG 1 cut(s) 389
SduI GDGCHC 1 cut(s) 727
SfaNI GCATC 3 cut(s) 185, 193, 815
SfcI CTRYAG 3 cut(s) 56, 438, 993
SgrAI CRCCGGYG 1 cut(s) 985
SmiMI CAYNNNNRTG 2 cut(s) 633, 678
SmlI CTYRAG 1 cut(s) 726
SmoI CTYRAG 1 cut(s) 726
SpeI ACTAGT 1 cut(s) 8
SsiI CCGC 1 cut(s) 954
SspI AATATT 1 cut(s) 541
SspMI CTAG 6 cut(s) 9, 50, 71, 192, 239, 378
SstI GAGCTC 1 cut(s) 727
StyD4I CCNGG 1 cut(s) 387
StyI CCWWGG 1 cut(s) 1071
TaaI ACNGT 2 cut(s) 466, 994
TaiI ACGT 3 cut(s) 311, 580, 895
TaqI TCGA 2 cut(s) 721, 815
TatI WGTACW 2 cut(s) 706, 1049
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 4 cut(s) 27, 44, 407, 479
Tru9I TTAA 4 cut(s) 27, 44, 407, 479
TseFI GTSAC 1 cut(s) 1110
TseI GCWGC 1 cut(s) 1031
Tsp45I GTSAC 1 cut(s) 1110
TspDTI ATGAA 3 cut(s) 154, 312, 960
Van91I CCANNNNNTGG 1 cut(s) 275
VspI ATTAAT 1 cut(s) 479
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 4 cut(s) 78, 748, 796, 979
XbaI TCTAGA 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 353
XspI CTAG 6 cut(s) 9, 50, 71, 192, 239, 378
ZrmI AGTACT 2 cut(s) 708, 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.