RchiOBHm_Chr6g0287731

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000369
Physical Location & Seq
Reverse (-)
51045062 .. 51046877
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25813

Sequence Viewer

Length: 1293 bp
ATGTTTCCTACTCCTAGATGGAATAGGTTTTCTAGTTTGATATCGAGTTTGGCTGGTAATACCACTATAATATCTAAAAATACAAGAACAGACCAAGTTAATTATTGTTGTGTTTATTGCCTCTCTCATAGTTTCAACAGAATGGATGCTGGAAGCTCTAATTTTCTGGCTGTAGCTGATGAAAGTGTTCTAGTAGAAATTCTCTCAAAACTGCCTCTCAAGTCTATATATAGGTTTAGGTGTGTATCGAAAGAGTGGAATGCTTTCACTAGAACTTCATATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCCGCCTCCTCCTCATCTCCTCCTCTTCTCTTGCTGATCAGAAACCAGCTGGAATCTCATTACTTGCCGACGAAGAAACGGCACTTTCAAGTTTGAATATACCTTTCCTCCCCAACGATGCAAGATGGGATTTAGATTTTGTGGGATCTAGTAATGGGTTAGTTTGCTGTAATAAGTTTCTTGATGGTAATGTATTAGCCATAATAGTATGGAACCCAGCAACAACACAATTTAGTTATCATCGTCATTCCTTTGAGAAGGAACTTGAGAATGCTACTTCCTATCCTCTTATAGGTTTTGATTTCATGCATAGCACCAATGTGTACAAAATGGTGGAAGTTTTCCCATATGGTAGTGATGATCCGGATGATCCCCTAAAACTTGGTTTTGGAGCCGCAGTCTTCACCCAGAATACACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAGTCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGATTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATATGCTATGTCAGTGACAATAGCATCCTCCCAACATTAGTTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGACAGTACTGCTGATCAGGAATCTGATTGGATTGAACAAATGAGAATCAGATGGCCGTCGCTATGTGAAGGAAGTTGGTTGTTATTGAGAGGAGTTTGGAAGGATCAATTTGTTTTCAGCAAAAAAGGATATGAAGTTGGTGCACATAATGAACCGGACAACCTGTTTTTGTATAACCCTATAACCGAGGCATTGAGAAAGGTACACGGAGAAAGAAACAATTTTTTTAGATTTGCAGTAAGTTATGCAGAGAGCAATGTCCAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

430

Amino Acids

48.72

Weight (kDa)

5.62

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 63 - 95 1.2e-06 F-box domain
FBA_3 PF08268 145 - 412 2.3e-14 F-box associated beta propeller domain
FBA_1 PF07734 146 - 429 2.3e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 797
AccIII TCCGGA 1 cut(s) 676
AciI CCGC 2 cut(s) 316, 708
AclWI GGATC 5 cut(s) 466, 668, 677, 1002, 1134
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 2 cut(s) 198, 970
AfaI GTAC 3 cut(s) 638, 1030, 1227
AfiI CCNNNNNNNGG 1 cut(s) 605
AgsI TTSAA 6 cut(s) 136, 402, 409, 808, 889, 1058
AjnI CCWGG 1 cut(s) 285
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 4 cut(s) 156, 176, 309, 362
AluI AGCT 4 cut(s) 156, 176, 309, 362
Alw21I GWGCWC 1 cut(s) 1168
Alw44I GTGCAC 1 cut(s) 1164
AlwI GGATC 5 cut(s) 466, 668, 677, 1002, 1134
Aor13HI TCCGGA 1 cut(s) 676
AoxI GGCC 2 cut(s) 882, 1076
ApaLI GTGCAC 1 cut(s) 1164
ApoI RAATTY 2 cut(s) 198, 970
Asp700I GAANNNNTTC 2 cut(s) 186, 263
AsuHPI GGTGA 2 cut(s) 709, 1013
BaeGI GKGCMC 1 cut(s) 1168
BbsI GAAGAC 2 cut(s) 293, 706
Bbv12I GWGCWC 1 cut(s) 1168
BccI CCATC 4 cut(s) 12, 432, 491, 1068
BceAI ACGGC 2 cut(s) 408, 1063
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 2 cut(s) 349, 1036
BfaI CTAG 5 cut(s) 15, 33, 191, 270, 462
BfmI CTRYAG 1 cut(s) 171
BisI GCNGC 2 cut(s) 316, 708
BlsI GCNGC 2 cut(s) 317, 709
BmcAI AGTACT 1 cut(s) 1030
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 527, 706
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 4 cut(s) 136, 421, 776, 951
BpiI GAAGAC 2 cut(s) 293, 706
BpuEI CTTGAG 2 cut(s) 203, 599
BsaJI CCNNGG 1 cut(s) 1209
BsaWI WCCGGW 2 cut(s) 676, 1177
BsaXI ACNNNNNCTCC 4 cut(s) 405, 435, 696, 726
Bsc4I CCNNNNNNNGG 1 cut(s) 605
Bse3DI GCAATG 1 cut(s) 1285
BseAI TCCGGA 1 cut(s) 676
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 1209
BseGI GGATG 4 cut(s) 151, 685, 839, 942
BseLI CCNNNNNNNGG 1 cut(s) 605
BseMI GCAATG 1 cut(s) 1285
BseRI GAGGAG 5 cut(s) 311, 314, 322, 325, 1128
BseSI GKGCMC 1 cut(s) 1168
BseYI CCCAGC 1 cut(s) 529
BshFI GGCC 2 cut(s) 884, 1078
BsiHKAI GWGCWC 1 cut(s) 1168
BsiSI CCGG 2 cut(s) 677, 1178
BslI CCNNNNNNNGG 1 cut(s) 605
BsmI GAATGC 2 cut(s) 265, 589
BsnI GGCC 2 cut(s) 884, 1078
Bsp1286I GDGCHC 1 cut(s) 1168
Bsp13I TCCGGA 1 cut(s) 676
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
BspACI CCGC 2 cut(s) 316, 708
BspANI GGCC 2 cut(s) 884, 1078
BspEI TCCGGA 1 cut(s) 676
BspLI GGNNCC 2 cut(s) 527, 706
BspPI GGATC 5 cut(s) 466, 668, 677, 1002, 1134
BsrDI GCAATG 1 cut(s) 1285
BsrGI TGTACA 1 cut(s) 636
BssECI CCNNGG 1 cut(s) 1209
BssMI GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 1028
Bst6I CTCTTC 1 cut(s) 343
BstAUI TGTACA 1 cut(s) 636
BstDEI CTNAG 1 cut(s) 1009
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 4 cut(s) 151, 685, 839, 942
BstKTI GATC 7 cut(s) 352, 461, 676, 685, 997, 1039, 1129
BstMBI GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 315
BstNI CCWGG 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 1168
BstV2I GAAGAC 2 cut(s) 293, 706
BstX2I RGATCY 1 cut(s) 458
BstYI RGATCY 1 cut(s) 458
BsuRI GGCC 2 cut(s) 884, 1078
BtsCI GGATG 4 cut(s) 151, 685, 839, 942
BtsIMutI CAGTG 1 cut(s) 937
Csp6I GTAC 3 cut(s) 637, 1029, 1226
CviAII CATG 4 cut(s) 619, 771, 875, 963
CviQI GTAC 3 cut(s) 637, 1029, 1226
DdeI CTNAG 1 cut(s) 1009
DpnI GATC 7 cut(s) 351, 460, 675, 684, 996, 1038, 1128
DpnII GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
Eco147I AGGCCT 1 cut(s) 884
Eco32I GATATC 1 cut(s) 42
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoRII CCWGG 1 cut(s) 285
EcoRV GATATC 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 624
FaeI CATG 4 cut(s) 622, 774, 878, 966
FatI CATG 4 cut(s) 618, 770, 874, 962
FauNDI CATATG 1 cut(s) 661
FbaI TGATCA 2 cut(s) 349, 1036
FblI GTMKAC 1 cut(s) 797
Fnu4HI GCNGC 2 cut(s) 316, 708
FokI GGATG 4 cut(s) 158, 692, 826, 929
Fsp4HI GCNGC 2 cut(s) 316, 708
FspBI CTAG 5 cut(s) 15, 33, 191, 270, 462
GluI GCNGC 2 cut(s) 316, 708
GsaI CCCAGC 1 cut(s) 533
HaeIII GGCC 2 cut(s) 884, 1078
HapII CCGG 2 cut(s) 677, 1178
Hin1II CATG 4 cut(s) 622, 774, 878, 966
HinfI GANTC 4 cut(s) 366, 749, 1043, 1068
HpaII CCGG 2 cut(s) 677, 1178
HphI GGTGA 2 cut(s) 709, 1013
Hpy166II GTNNAC 6 cut(s) 637, 798, 872, 1024, 1166, 1228
Hpy188I TCNGA 3 cut(s) 354, 1048, 1073
Hpy188III TCNNGA 4 cut(s) 494, 677, 753, 1040
Hpy8I GTNNAC 6 cut(s) 637, 798, 872, 1024, 1166, 1228
Hpy99I CGWCG 2 cut(s) 386, 1084
HpyAV CCTTC 5 cut(s) 565, 741, 895, 1085, 1117
HpyCH4III ACNGT 1 cut(s) 1028
HpyCH4V TGCA 7 cut(s) 434, 622, 767, 980, 1166, 1259, 1271
HpyF10VI GCNNNNNNNGC 1 cut(s) 315
HpyF3I CTNAG 1 cut(s) 1009
Hsp92II CATG 4 cut(s) 622, 774, 878, 966
Kpn2I TCCGGA 1 cut(s) 676
Ksp22I TGATCA 2 cut(s) 349, 1036
Kzo9I GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
LmnI GCTCC 1 cut(s) 704
LweI GCATC 4 cut(s) 136, 421, 776, 951
MaeI CTAG 5 cut(s) 15, 33, 191, 270, 462
MaeIII GTNAC 2 cut(s) 932, 1001
MalI GATC 7 cut(s) 351, 460, 675, 684, 996, 1038, 1128
MboI GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
MboII GAAGA 5 cut(s) 293, 330, 398, 706, 926
MflI RGATCY 1 cut(s) 458
MhlI GDGCHC 1 cut(s) 1168
MluCI AATT 8 cut(s) 100, 160, 198, 542, 756, 970, 1130, 1243
MlyI GAGTC 1 cut(s) 758
Mph1103I ATGCAT 1 cut(s) 624
MroI TCCGGA 1 cut(s) 676
MroXI GAANNNNTTC 2 cut(s) 186, 263
MseI TTAA 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 677, 1178
MspR9I CCNGG 1 cut(s) 287
Mva1269I GAATGC 2 cut(s) 265, 589
MvaI CCWGG 1 cut(s) 287
MwoI GCNNNNNNNGC 1 cut(s) 315
NdeI CATATG 1 cut(s) 661
NdeII GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
NlaIII CATG 4 cut(s) 622, 774, 878, 966
NlaIV GGNNCC 2 cut(s) 527, 706
NmuCI GTSAC 2 cut(s) 932, 1001
NsiI ATGCAT 1 cut(s) 624
OliI CACNNNNGTG 1 cut(s) 632
PceI AGGCCT 1 cut(s) 884
PctI GAATGC 2 cut(s) 265, 589
PdmI GAANNNNTTC 2 cut(s) 186, 263
PfeI GAWTC 3 cut(s) 366, 1043, 1068
PflFI GACNNNGTC 1 cut(s) 297
PfoI TCCNGGA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 317, 709
PleI GAGTC 1 cut(s) 757
PpsI GAGTC 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 285
PspFI CCCAGC 1 cut(s) 529
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 527, 706
PsuI RGATCY 1 cut(s) 458
PsyI GACNNNGTC 1 cut(s) 297
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 3 cut(s) 638, 1030, 1227
RsaNI GTAC 3 cut(s) 637, 1029, 1226
RseI CAYNNNNRTG 1 cut(s) 632
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 2 cut(s) 316, 708
Sau3AI GATC 7 cut(s) 349, 458, 673, 682, 994, 1036, 1126
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 1168
SfaNI GCATC 4 cut(s) 136, 421, 776, 951
SfcI CTRYAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 632
SmlI CTYRAG 2 cut(s) 218, 578
SmoI CTYRAG 2 cut(s) 218, 578
Sse9I AATT 8 cut(s) 100, 160, 198, 542, 756, 970, 1130, 1243
SseBI AGGCCT 1 cut(s) 884
SsiI CCGC 2 cut(s) 316, 708
SspMI CTAG 5 cut(s) 15, 33, 191, 270, 462
StuI AGGCCT 1 cut(s) 884
StyD4I CCNGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 1028
TaqI TCGA 3 cut(s) 44, 248, 752
TasI AATT 8 cut(s) 100, 160, 198, 542, 756, 970, 1130, 1243
TatI WGTACW 2 cut(s) 636, 1028
TauI GCSGC 2 cut(s) 318, 710
TfiI GAWTC 3 cut(s) 366, 1043, 1068
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 937
TseFI GTSAC 2 cut(s) 932, 1001
Tsp45I GTSAC 2 cut(s) 932, 1001
TspDTI ATGAA 6 cut(s) 195, 267, 607, 951, 1170, 1188
TspGWI ACGGA 1 cut(s) 1245
TspRI CASTG 1 cut(s) 937
Tth111I GACNNNGTC 1 cut(s) 297
VneI GTGCAC 1 cut(s) 1164
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 2 cut(s) 198, 970
XmiI GTMKAC 1 cut(s) 797
XmnI GAANNNNTTC 2 cut(s) 186, 263
XspI CTAG 5 cut(s) 15, 33, 191, 270, 462
ZrmI AGTACT 1 cut(s) 1030
Zsp2I ATGCAT 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.