RchiOBHm_Chr6g0287821

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000369
Physical Location & Seq
Forward (+)
51106550 .. 51107344
795 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25822

Sequence Viewer

Length: 795 bp
ATGGAACCTGGAGCTAGTTTTTTGGCTCTGGCTGATGAAAGTATTCTAGTAGAAATTCTCTTAAGATTGCCTCTCAAGTCTATATGTAGGTTCAGGTGTGTATCAAAAGAGTGGGATGGTCTCACCAAACTTAGTTATTTCCTGGACAGACATCGTCTTCACAGCTCTCGCTGTCTTCTCCTCATCTCCTCGTCCTCTCTTGCTGCCGGAATTAGTAATAAGAAAGGAGTTGGAATCTCATTACTTGCTGATGAAGAAACGGCAGTTTCAAGTTTGAGTGTACCTTTCCTCCCCAAGGATGCAAGATGGGCTTTAGAATTTGTGGGATCTAGTAATGGGTTACTTTGTTGCGTTACCTTGCTTAAGGGTACTCGAATAGCCACAGTAGTATGGAACCCAGCAACAGACCAATTTAATTATTTTCCTGTTGGTTTGGAGAAAAGAGTTGAGAATGCTACTTACTATCGTGTAATCATAGGTTTTGATTTCATGCATAGCATTAGTGCATACAAGTTGGTGACAGTTCACCCTTGTGTTAATCCCATTAATGATCCGAACCAACTTACTTTTCAAGCCAGAGTGTTCAATCCTAGTAGAAATTCTTGGAGAGTAGTTGAACCGCAACTTGAACTTACATCATGTAGACGGTTTAATATTCACTCTATTACTGTGAATGGAGTGCTGTATTGGTTGGTAGAGAAACAAACAGCTGGGGACCTGGGGTGGCTCTCGTTTCGTTCAGTTTACATGATGAGGCCTTCAAGGATACATGGAAACCACTACCAGGAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

264

Amino Acids

29.84

Weight (kDa)

9.1

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 38 7.4e-06 F-box domain
FBA_3 PF08268 91 - 236 4.5e-09 F-box associated beta propeller domain
FBA_1 PF07734 102 - 235 2.2e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 643
AciI CCGC 1 cut(s) 620
AclWI GGATC 2 cut(s) 334, 545
AcsI RAATTY 3 cut(s) 54, 317, 598
AfaI GTAC 2 cut(s) 282, 370
AfiI CCNNNNNNNGG 2 cut(s) 295, 784
AflII CTTAAG 2 cut(s) 61, 362
AgsI TTSAA 6 cut(s) 270, 572, 586, 617, 629, 762
AjnI CCWGG 4 cut(s) 7, 141, 717, 783
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AleI CACNNNNGTG 1 cut(s) 531
AluBI AGCT 3 cut(s) 14, 165, 710
AluI AGCT 3 cut(s) 14, 165, 710
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 334, 545
AoxI GGCC 1 cut(s) 755
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 54, 317, 598
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 715
AsuHPI GGTGA 3 cut(s) 115, 518, 529
AvaII GGWCC 1 cut(s) 715
BbsI GAAGAC 2 cut(s) 149, 167
BbvI GCAGC 1 cut(s) 190
BccI CCATC 2 cut(s) 110, 300
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 4 cut(s) 9, 143, 719, 785
BciVI GTATCC 1 cut(s) 759
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 4 cut(s) 15, 47, 330, 591
BfrI CTTAAG 2 cut(s) 61, 362
BfuI GTATCC 1 cut(s) 759
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 4 cut(s) 9, 143, 719, 785
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 3 cut(s) 6, 395, 716
BmrFI CCNGG 4 cut(s) 9, 143, 719, 785
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 149, 167
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 294, 718
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 784
BseBI CCWGG 4 cut(s) 9, 143, 719, 785
BseDI CCNNGG 2 cut(s) 294, 718
BseGI GGATG 2 cut(s) 121, 304
BseLI CCNNNNNNNGG 2 cut(s) 295, 784
BseRI GAGGAG 2 cut(s) 170, 178
BseXI GCAGC 1 cut(s) 190
BseYI CCCAGC 2 cut(s) 397, 710
BshFI GGCC 1 cut(s) 757
BsiSI CCGG 1 cut(s) 207
BslFI GGGAC 1 cut(s) 728
BslI CCNNNNNNNGG 2 cut(s) 295, 784
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 728
BsmI GAATGC 1 cut(s) 457
BsnI GGCC 1 cut(s) 757
Bso31I GGTCTC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 326, 550
BspACI CCGC 1 cut(s) 620
BspANI GGCC 1 cut(s) 757
BspLI GGNNCC 3 cut(s) 6, 395, 716
BspPI GGATC 2 cut(s) 334, 545
BspTI CTTAAG 2 cut(s) 61, 362
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 2 cut(s) 294, 718
BssMI GATC 2 cut(s) 326, 550
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 9, 143, 719, 785
Bst4CI ACNGT 4 cut(s) 385, 523, 648, 670
BstAFI CTTAAG 2 cut(s) 61, 362
BstDEI CTNAG 1 cut(s) 131
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 2 cut(s) 121, 304
BstKTI GATC 2 cut(s) 329, 553
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 2 cut(s) 326, 550
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 4 cut(s) 9, 143, 719, 785
BstSCI CCNGG 4 cut(s) 7, 141, 717, 783
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 2 cut(s) 149, 167
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuI GTATCC 1 cut(s) 759
BsuRI GGCC 1 cut(s) 757
BtsCI GGATG 2 cut(s) 121, 304
Cfr13I GGNCC 1 cut(s) 715
Csp6I GTAC 2 cut(s) 281, 369
CviAII CATG 4 cut(s) 490, 639, 748, 770
CviQI GTAC 2 cut(s) 281, 369
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 328, 552
DpnII GATC 2 cut(s) 326, 550
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 757
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 1 cut(s) 715
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 4 cut(s) 7, 141, 717, 783
EcoT14I CCWWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 495
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 493, 642, 751, 773
FalI AAGNNNNNCTT 2 cut(s) 295, 327
FaqI GGGAC 1 cut(s) 728
FatI CATG 4 cut(s) 489, 638, 747, 769
FblI GTMKAC 1 cut(s) 643
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 2 cut(s) 128, 311
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 4 cut(s) 15, 47, 330, 591
GluI GCNGC 1 cut(s) 204
GsaI CCCAGC 2 cut(s) 401, 714
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 757
HapII CCGG 1 cut(s) 207
Hin1II CATG 4 cut(s) 493, 642, 751, 773
HinfI GANTC 1 cut(s) 234
HpaII CCGG 1 cut(s) 207
HphI GGTGA 3 cut(s) 115, 518, 529
Hpy166II GTNNAC 4 cut(s) 281, 526, 644, 745
Hpy188I TCNGA 1 cut(s) 555
Hpy8I GTNNAC 4 cut(s) 281, 526, 644, 745
HpyAV CCTTC 1 cut(s) 768
HpyCH4III ACNGT 4 cut(s) 385, 523, 648, 670
HpyCH4V TGCA 3 cut(s) 302, 493, 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 4 cut(s) 493, 642, 751, 773
Kzo9I GATC 2 cut(s) 326, 550
LmnI GCTCC 1 cut(s) 11
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 1 cut(s) 289
MaeI CTAG 4 cut(s) 15, 47, 330, 591
MaeIII GTNAC 3 cut(s) 339, 352, 517
MalI GATC 2 cut(s) 328, 552
MboI GATC 2 cut(s) 326, 550
MboII GAAGA 3 cut(s) 149, 167, 266
MflI RGATCY 1 cut(s) 326
MluCI AATT 6 cut(s) 54, 210, 317, 410, 415, 598
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 6 cut(s) 81, 191, 199, 205, 299, 747
Mph1103I ATGCAT 1 cut(s) 495
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 6 cut(s) 62, 363, 414, 537, 546, 651
MslI CAYNNNNRTG 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 710
MspCI CTTAAG 2 cut(s) 61, 362
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 4 cut(s) 9, 143, 719, 785
Mva1269I GAATGC 1 cut(s) 457
MvaI CCWGG 4 cut(s) 9, 143, 719, 785
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 2 cut(s) 326, 550
NlaIII CATG 4 cut(s) 493, 642, 751, 773
NlaIV GGNNCC 3 cut(s) 6, 395, 716
NmuCI GTSAC 1 cut(s) 517
NsiI ATGCAT 1 cut(s) 495
OliI CACNNNNGTG 1 cut(s) 531
PceI AGGCCT 1 cut(s) 757
PctI GAATGC 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 153
PfoI TCCNGGA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 715
PshBI ATTAAT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 4 cut(s) 7, 141, 717, 783
PspFI CCCAGC 2 cut(s) 397, 710
PspGI CCWGG 4 cut(s) 7, 141, 717, 783
PspN4I GGNNCC 3 cut(s) 6, 395, 716
PspPI GGNCC 1 cut(s) 715
PspPPI RGGWCCY 1 cut(s) 715
PsuI RGATCY 1 cut(s) 326
PsyI GACNNNGTC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 2 cut(s) 282, 370
RsaNI GTAC 2 cut(s) 281, 369
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 6 cut(s) 62, 363, 414, 537, 546, 651
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 2 cut(s) 326, 550
Sau96I GGNCC 1 cut(s) 715
ScrFI CCNGG 4 cut(s) 9, 143, 719, 785
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 3 cut(s) 61, 74, 362
SmoI CTYRAG 3 cut(s) 61, 74, 362
Sse9I AATT 6 cut(s) 54, 210, 317, 410, 415, 598
SseBI AGGCCT 1 cut(s) 757
SsiI CCGC 1 cut(s) 620
SspI AATATT 1 cut(s) 655
SspMI CTAG 4 cut(s) 15, 47, 330, 591
StuI AGGCCT 1 cut(s) 757
StyD4I CCNGG 4 cut(s) 7, 141, 717, 783
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 385, 523, 648, 670
TaqI TCGA 1 cut(s) 373
TasI AATT 6 cut(s) 54, 210, 317, 410, 415, 598
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 6 cut(s) 62, 363, 414, 537, 546, 651
Tru9I TTAA 6 cut(s) 62, 363, 414, 537, 546, 651
TseFI GTSAC 1 cut(s) 517
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 517
TspDTI ATGAA 3 cut(s) 51, 267, 478
Tth111I GACNNNGTC 1 cut(s) 153
Vha464I CTTAAG 2 cut(s) 61, 362
VpaK11BI GGWCC 1 cut(s) 715
VspI ATTAAT 1 cut(s) 546
XagI CCTNNNNNAGG 1 cut(s) 293
XapI RAATTY 3 cut(s) 54, 317, 598
XmiI GTMKAC 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 4 cut(s) 15, 47, 330, 591
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.