RLG00000024124

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000369
Physical Location & Seq
Forward (+)
32190802 .. 32192139
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024124

Sequence Viewer

Length: 1194 bp
ATGGAAACTAGTAGAAGTAAAGTGGTTAAGGTGAGCGATACTTTAACACTAGGCCTGCAGGAAGATGTCCTAGTAGAAATTCTCTCATATCTGCCTGTCAAGTCTTTACTTAGGTTTAGTTGCGTATCGCAAGAGTGGTATGCTCTCACCAAAAGTCCTTATTTCATTTCCAGACACCTTGTGCATCGCTCTAGATGCTCTGATCCACATCATCCTTGTCTTCTCTTTCTCTCACGTGTAGCTGGAAGTTCTGAAAATAATTTCAAACCACTACTTGGATTCTCATTGCTTCGAGATGAAGAAACAACGTTGTTGAGATTACCTTTCTGGAACCTTACAAGGCAAAGAAGTGGTGGTTTAGGGCTTGTGGGATCTAGTAATGGCCTGGATGAGGAGGAGGATATACTACGTGTAAAGGACAACTCTTTGCCCTTTCCTCTTATAGGTTTTGATTTCGTACATGATCATGACATTACTGAATATAAACTGGTCAGAGTTTTCAATCATGATAGTGATGATTCCTACGATCATGGCAAAGTACTTACAACTTTTCGAGCACAAGTCTTCGTCCAAAGCACAAATTCTTGGAGACAAGCCAAGAACGAGTTAGGGTTTCCATCATGTGAAAATTCTTTTGCATCAACTGCGATTACATTGAATGGAGTGCTGTATTGGAAGGTACAGCGAGCAGGGGACGAGTGCGGTGTTATGTCATTCAATTTACGTGAGGAGGTTTTCAATGTGATACAGCTACCAATGGATCTACGAAATCATGATGACTGGGGCGGACTCCAATTATATTCATGGAGAAATTCACCAGCGACTGTAGCACTTGATTATTCGGCCAATGACGATCTCAACGCAGTGCTTTGGGTGATGAGTACTGATCAAGAATCAAAGAGGAGTTGTAAGAATGGTGCACAAATACAAAATCCCGCTTGGACTCGACAGTTCAGATTCAAATACTCAGTAATTCCAGAAGGAACGCGCCTCCTGGGAAGTTGGAAGGATCAATTTCTCTTTGCATCCGACAAAAGTGATGAAGTTTTTGATGCGGCGGCTGATAATATTGTGCCTCAAGACCTGTTTTCGTATGACCCTAAAAGCGAGACAAAGAGAAAAATTCTCAAAGATGGAGAGAGGATCAAGATTTGTGGAGGAGTAAATTATGTGGAGAGCCTAGTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

398

Amino Acids

45.19

Weight (kDa)

5.66

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 19 - 56 1.1e-09 F-box domain
F-box-like PF12937 22 - 59 1.1e-07 F-box-like
FBA_3 PF08268 148 - 310 2.5e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 275
AccII CGCG 1 cut(s) 988
AciI CCGC 5 cut(s) 702, 786, 936, 1055, 1058
AclI AACGTT 1 cut(s) 308
AclWI GGATC 5 cut(s) 197, 379, 768, 1017, 1151
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 5 cut(s) 78, 580, 628, 811, 1122
AcvI CACGTG 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 181
AfaI GTAC 4 cut(s) 459, 540, 681, 883
AfiI CCNNNNNNNGG 3 cut(s) 275, 391, 443
AflIII ACRYGT 2 cut(s) 235, 409
AgsI TTSAA 6 cut(s) 265, 502, 658, 718, 739, 961
AhlI ACTAGT 1 cut(s) 8
AjnI CCWGG 2 cut(s) 384, 993
AluBI AGCT 2 cut(s) 242, 751
AluI AGCT 2 cut(s) 242, 751
Alw21I GWGCWC 2 cut(s) 559, 922
Alw26I GTCTC 2 cut(s) 583, 1103
Alw44I GTGCAC 1 cut(s) 918
AlwI GGATC 5 cut(s) 197, 379, 768, 1017, 1151
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 3 cut(s) 52, 382, 843
ApaLI GTGCAC 1 cut(s) 918
ApoI RAATTY 5 cut(s) 78, 580, 628, 811, 1122
AspLEI GCGC 1 cut(s) 990
AsuHPI GGTGA 4 cut(s) 43, 139, 807, 886
BaeGI GKGCMC 1 cut(s) 922
BbrPI CACGTG 1 cut(s) 236
BbsI GAAGAC 2 cut(s) 212, 556
Bbv12I GWGCWC 2 cut(s) 559, 922
BccI CCATC 2 cut(s) 625, 1127
BciT130I CCWGG 2 cut(s) 386, 995
BclI TGATCA 2 cut(s) 463, 886
BcoDI GTCTC 2 cut(s) 583, 1103
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 7 cut(s) 9, 50, 71, 192, 375, 1181, 1192
BfmI CTRYAG 2 cut(s) 56, 825
BisI GCNGC 2 cut(s) 1056, 1059
BlsI GCNGC 2 cut(s) 1057, 1060
BmcAI AGTACT 2 cut(s) 540, 883
Bme1390I CCNGG 2 cut(s) 386, 995
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 2 cut(s) 386, 995
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 5 cut(s) 185, 193, 647, 1034, 1042
BmuI ACTGGG 1 cut(s) 790
BpiI GAAGAC 2 cut(s) 212, 556
BpuEI CTTGAG 1 cut(s) 1062
BsaAI YACGTR 3 cut(s) 236, 410, 725
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 994
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 391, 443
Bse1I ACTGG 3 cut(s) 492, 785, 1187
Bse3DI GCAATG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 2 cut(s) 386, 995
BseDI CCNNGG 1 cut(s) 994
BseGI GGATG 3 cut(s) 211, 394, 1025
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 3 cut(s) 275, 391, 443
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 3 cut(s) 492, 785, 1187
BseRI GAGGAG 5 cut(s) 407, 410, 743, 916, 1173
BseSI GKGCMC 1 cut(s) 922
Bsh1236I CGCG 1 cut(s) 988
BshFI GGCC 3 cut(s) 54, 384, 845
BsiHKAI GWGCWC 2 cut(s) 559, 922
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 3 cut(s) 275, 391, 443
BsmAI GTCTC 2 cut(s) 583, 1103
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 3 cut(s) 54, 384, 845
Bsp1286I GDGCHC 2 cut(s) 559, 922
Bsp143I GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
BspACI CCGC 5 cut(s) 702, 786, 936, 1055, 1058
BspANI GGCC 3 cut(s) 54, 384, 845
BspCNI CTCAG 1 cut(s) 980
BspFNI CGCG 1 cut(s) 988
BspHI TCATGA 3 cut(s) 466, 505, 772
BspLI GGNNCC 1 cut(s) 332
BspMAI CTGCAG 1 cut(s) 60
BspPI GGATC 5 cut(s) 197, 379, 768, 1017, 1151
BsrDI GCAATG 1 cut(s) 284
BsrI ACTGG 3 cut(s) 492, 785, 1187
BssECI CCNNGG 1 cut(s) 994
BssMI GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
Bst2UI CCWGG 2 cut(s) 386, 995
Bst4CI ACNGT 2 cut(s) 826, 951
BstAPI GCANNNNNTGC 1 cut(s) 644
BstBAI YACGTR 3 cut(s) 236, 410, 725
BstC8I GCNNGC 2 cut(s) 56, 687
BstDEI CTNAG 2 cut(s) 110, 967
BstENI CCTNNNNNAGG 2 cut(s) 389, 441
BstF5I GGATG 3 cut(s) 211, 394, 1025
BstFNI CGCG 1 cut(s) 988
BstHHI GCGC 1 cut(s) 990
BstKTI GATC 9 cut(s) 205, 374, 466, 529, 763, 856, 889, 1012, 1146
BstMAI GTCTC 2 cut(s) 583, 1103
BstMBI GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
BstMWI GCNNNNNNNGC 3 cut(s) 195, 644, 827
BstNI CCWGG 2 cut(s) 386, 995
BstSCI CCNGG 2 cut(s) 384, 993
BstSFI CTRYAG 2 cut(s) 56, 825
BstSLI GKGCMC 1 cut(s) 922
BstUI CGCG 1 cut(s) 988
BstV2I GAAGAC 2 cut(s) 212, 556
BstX2I RGATCY 2 cut(s) 371, 760
BstYI RGATCY 2 cut(s) 371, 760
BsuRI GGCC 3 cut(s) 54, 384, 845
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 3 cut(s) 211, 394, 1025
BtsI GCAGTG 1 cut(s) 870
BtsIMutI CAGTG 1 cut(s) 870
Cac8I GCNNGC 2 cut(s) 56, 687
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 3 cut(s) 466, 505, 772
CfoI GCGC 1 cut(s) 990
Csp6I GTAC 4 cut(s) 458, 539, 680, 882
CspCI CAANNNNNGTGG 2 cut(s) 1135, 1170
CviAII CATG 7 cut(s) 461, 467, 506, 530, 621, 773, 804
CviJI RGCY 9 cut(s) 54, 242, 364, 384, 596, 751, 845, 1061, 1179
CviKI_1 RGCY 9 cut(s) 54, 242, 364, 384, 596, 751, 845, 1061, 1179
CviQI GTAC 4 cut(s) 458, 539, 680, 882
DdeI CTNAG 2 cut(s) 110, 967
DpnI GATC 9 cut(s) 204, 373, 465, 528, 762, 855, 888, 1011, 1145
DpnII GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
DraIII CACNNNGTG 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 843
EciI GGCGGA 1 cut(s) 801
Eco147I AGGCCT 1 cut(s) 54
Eco72I CACGTG 1 cut(s) 236
EcoNI CCTNNNNNAGG 2 cut(s) 389, 441
EcoRII CCWGG 2 cut(s) 384, 993
FaeI CATG 7 cut(s) 464, 470, 509, 533, 624, 776, 807
FaqI GGGAC 1 cut(s) 707
FatI CATG 7 cut(s) 460, 466, 505, 529, 620, 772, 803
FauI CCCGC 1 cut(s) 943
FbaI TGATCA 2 cut(s) 463, 886
Fnu4HI GCNGC 2 cut(s) 1056, 1059
FokI GGATG 3 cut(s) 198, 401, 1012
Fsp4HI GCNGC 2 cut(s) 1056, 1059
FspBI CTAG 7 cut(s) 9, 50, 71, 192, 375, 1181, 1192
GlaI GCGC 1 cut(s) 989
GluI GCNGC 2 cut(s) 1056, 1059
HaeIII GGCC 3 cut(s) 54, 384, 845
HhaI GCGC 1 cut(s) 990
Hin1II CATG 7 cut(s) 464, 470, 509, 533, 624, 776, 807
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HinfI GANTC 6 cut(s) 279, 518, 789, 893, 943, 957
HphI GGTGA 4 cut(s) 43, 139, 807, 886
Hpy166II GTNNAC 1 cut(s) 920
Hpy188I TCNGA 5 cut(s) 202, 253, 494, 956, 1030
Hpy8I GTNNAC 1 cut(s) 920
HpyAV CCTTC 3 cut(s) 670, 974, 1000
HpyCH4III ACNGT 2 cut(s) 826, 951
HpyCH4IV ACGT 4 cut(s) 235, 308, 409, 724
HpyCH4V TGCA 5 cut(s) 58, 184, 638, 920, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 195, 644, 827
HpyF3I CTNAG 2 cut(s) 110, 967
HpySE526I ACGT 4 cut(s) 235, 308, 409, 724
Hsp92II CATG 7 cut(s) 464, 470, 509, 533, 624, 776, 807
HspAI GCGC 1 cut(s) 988
Ksp22I TGATCA 2 cut(s) 463, 886
Kzo9I GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
LweI GCATC 5 cut(s) 185, 193, 647, 1034, 1042
MaeI CTAG 7 cut(s) 9, 50, 71, 192, 375, 1181, 1192
MaeII ACGT 4 cut(s) 235, 308, 409, 724
MalI GATC 9 cut(s) 204, 373, 465, 528, 762, 855, 888, 1011, 1145
MboI GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
MboII GAAGA 4 cut(s) 74, 212, 311, 556
MflI RGATCY 2 cut(s) 371, 760
MhlI GDGCHC 2 cut(s) 559, 922
MlyI GAGTC 2 cut(s) 783, 937
MmeI TCCRAC 2 cut(s) 983, 1053
MseI TTAA 2 cut(s) 27, 44
MslI CAYNNNNRTG 2 cut(s) 465, 510
MspR9I CCNGG 2 cut(s) 386, 995
MvaI CCWGG 2 cut(s) 386, 995
MvnI CGCG 1 cut(s) 988
MwoI GCNNNNNNNGC 3 cut(s) 195, 644, 827
NdeII GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
NlaIII CATG 7 cut(s) 464, 470, 509, 533, 624, 776, 807
NlaIV GGNNCC 1 cut(s) 332
PagI TCATGA 3 cut(s) 466, 505, 772
PceI AGGCCT 1 cut(s) 54
PfeI GAWTC 4 cut(s) 279, 518, 893, 957
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 2 cut(s) 1057, 1060
PleI GAGTC 2 cut(s) 783, 937
PmaCI CACGTG 1 cut(s) 236
PmlI CACGTG 1 cut(s) 236
PpsI GAGTC 2 cut(s) 783, 937
Ppu21I YACGTR 3 cut(s) 236, 410, 725
Psp1406I AACGTT 1 cut(s) 308
Psp6I CCWGG 2 cut(s) 384, 993
PspCI CACGTG 1 cut(s) 236
PspGI CCWGG 2 cut(s) 384, 993
PspN4I GGNNCC 1 cut(s) 332
PstI CTGCAG 1 cut(s) 60
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 2 cut(s) 371, 760
RsaI GTAC 4 cut(s) 459, 540, 681, 883
RsaNI GTAC 4 cut(s) 458, 539, 680, 882
RseI CAYNNNNRTG 2 cut(s) 465, 510
SaqAI TTAA 2 cut(s) 27, 44
SatI GCNGC 2 cut(s) 1056, 1059
Sau3AI GATC 9 cut(s) 202, 371, 463, 526, 760, 853, 886, 1009, 1143
SbfI CCTGCAGG 1 cut(s) 60
ScaI AGTACT 2 cut(s) 540, 883
SchI GAGTC 2 cut(s) 783, 937
ScrFI CCNGG 2 cut(s) 386, 995
SdaI CCTGCAGG 1 cut(s) 60
SduI GDGCHC 2 cut(s) 559, 922
SfaNI GCATC 5 cut(s) 185, 193, 647, 1034, 1042
SfcI CTRYAG 2 cut(s) 56, 825
SmiMI CAYNNNNRTG 2 cut(s) 465, 510
SmlI CTYRAG 1 cut(s) 1077
SmoI CTYRAG 1 cut(s) 1077
SpeI ACTAGT 1 cut(s) 8
Sse8387I CCTGCAGG 1 cut(s) 60
SseBI AGGCCT 1 cut(s) 54
SsiI CCGC 5 cut(s) 702, 786, 936, 1055, 1058
SspI AATATT 1 cut(s) 1069
SspMI CTAG 7 cut(s) 9, 50, 71, 192, 375, 1181, 1192
StuI AGGCCT 1 cut(s) 54
StyD4I CCNGG 2 cut(s) 384, 993
TaaI ACNGT 2 cut(s) 826, 951
TaiI ACGT 4 cut(s) 238, 311, 412, 727
TaqI TCGA 3 cut(s) 292, 553, 946
TatI WGTACW 2 cut(s) 538, 881
TauI GCSGC 2 cut(s) 1058, 1061
TfiI GAWTC 4 cut(s) 279, 518, 893, 957
Tru1I TTAA 2 cut(s) 27, 44
Tru9I TTAA 2 cut(s) 27, 44
TscAI CASTG 1 cut(s) 870
TspDTI ATGAA 4 cut(s) 154, 312, 792, 1056
TspRI CASTG 1 cut(s) 870
Van91I CCANNNNNTGG 1 cut(s) 275
VneI GTGCAC 1 cut(s) 918
XagI CCTNNNNNAGG 2 cut(s) 389, 441
XapI RAATTY 5 cut(s) 78, 580, 628, 811, 1122
XbaI TCTAGA 1 cut(s) 191
XspI CTAG 7 cut(s) 9, 50, 71, 192, 375, 1181, 1192
ZrmI AGTACT 2 cut(s) 540, 883
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.