Rh6DG299000

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000369
Physical Location & Seq
Reverse (-)
50039348 .. 50040092
745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG299000.1

Sequence Viewer

Length: 651 bp
ATGGTGGAAGTTTTCCCATATGGTAGTGATGATCCGGATGATCCCCTAAAACTTGGTTTTGGAGCCGCAGTCTTCACCCAGAATACACCTTCTTGGAGAGTAGTTGAGTCGAGAATTGGACTTGCATCATGTAAAATGTGTTATACAAATCAGTCTACTACCTTGAATGGAGTGCTGTATTGGTTGGTAGAGCATACATCCAATGGATTTGCTGTCGTTTCGTTTAGTTTACATGATGAGGCCTTCAAGGATATATGTAAATCACTACCAGAAGAAATATGCTATGTCAGTGACAATAGCATCCTCCCAACATTAGTTTCATGGAGAAATTCACTTGCAGTTGTAGGTGTGGATCAGGGTGACAACTTAGTGCTTTGGGTGGACAGTACTGCTGATCAGGAATCTGATTGGATTGAACAAATGAGAATCAGATGGCCGTCGCTATGTGAAGGAAGTTGGTTGTTATTGAGAGGAGTTTGGAAGGATCAATTTGTTTTCAGCAAAAAAGGATATGAAGTTGGTGCACATAATGAACCGGACAACCTGTTTTTGTATAACCCTATAACCGAGGCATTGAGAAAGGTACACGGAGAAAGAAACAATTTTTTTAGATTTGCAGTAAGTTATGCAGAGAGCAATGTCCAGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

216

Amino Acids

24.49

Weight (kDa)

4.74

Isoelectric Point (pI)

28.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 22 - 215 3.3e-10 F-box associated beta propeller domain
FBA_3 PF08268 24 - 198 1.5e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 1 cut(s) 66
AclWI GGATC 4 cut(s) 26, 35, 360, 492
AcoI YGGCCR 1 cut(s) 434
AcsI RAATTY 1 cut(s) 328
AfaI GTAC 2 cut(s) 388, 585
AgsI TTSAA 3 cut(s) 166, 247, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
Alw21I GWGCWC 1 cut(s) 526
Alw44I GTGCAC 1 cut(s) 522
AlwI GGATC 4 cut(s) 26, 35, 360, 492
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 2 cut(s) 240, 434
ApaLI GTGCAC 1 cut(s) 522
ApoI RAATTY 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 67, 371
BaeGI GKGCMC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 526
BccI CCATC 1 cut(s) 426
BceAI ACGGC 1 cut(s) 421
BclI TGATCA 1 cut(s) 394
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
BmcAI AGTACT 1 cut(s) 388
BmiI GGNNCC 1 cut(s) 64
BmsI GCATC 2 cut(s) 134, 309
BpiI GAAGAC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 567
BsaWI WCCGGW 2 cut(s) 34, 535
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse3DI GCAATG 1 cut(s) 643
BseAI TCCGGA 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 567
BseGI GGATG 3 cut(s) 43, 197, 300
BseMI GCAATG 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 526
BshFI GGCC 2 cut(s) 242, 436
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 2 cut(s) 35, 536
BsnI GGCC 2 cut(s) 242, 436
Bsp1286I GDGCHC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 5 cut(s) 31, 40, 352, 394, 484
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 242, 436
BspEI TCCGGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 64
BspPI GGATC 4 cut(s) 26, 35, 360, 492
BsrDI GCAATG 1 cut(s) 643
BssECI CCNNGG 1 cut(s) 567
BssMI GATC 5 cut(s) 31, 40, 352, 394, 484
Bst4CI ACNGT 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 367
BstF5I GGATG 3 cut(s) 43, 197, 300
BstKTI GATC 5 cut(s) 34, 43, 355, 397, 487
BstMBI GATC 5 cut(s) 31, 40, 352, 394, 484
BstSLI GKGCMC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 242, 436
BtsCI GGATG 3 cut(s) 43, 197, 300
BtsIMutI CAGTG 1 cut(s) 295
Csp6I GTAC 2 cut(s) 387, 584
CviAII CATG 3 cut(s) 129, 233, 321
CviJI RGCY 4 cut(s) 65, 242, 436, 646
CviKI_1 RGCY 4 cut(s) 65, 242, 436, 646
CviQI GTAC 2 cut(s) 387, 584
DdeI CTNAG 1 cut(s) 367
DpnI GATC 5 cut(s) 33, 42, 354, 396, 486
DpnII GATC 5 cut(s) 31, 40, 352, 394, 484
EaeI YGGCCR 1 cut(s) 434
Eco147I AGGCCT 1 cut(s) 242
FaeI CATG 3 cut(s) 132, 236, 324
FatI CATG 3 cut(s) 128, 232, 320
FauNDI CATATG 1 cut(s) 19
FbaI TGATCA 1 cut(s) 394
FblI GTMKAC 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 50, 184, 287
Fsp4HI GCNGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 242, 436
HapII CCGG 2 cut(s) 35, 536
Hin1II CATG 3 cut(s) 132, 236, 324
HinfI GANTC 3 cut(s) 107, 401, 426
HpaII CCGG 2 cut(s) 35, 536
HphI GGTGA 2 cut(s) 67, 371
Hpy166II GTNNAC 5 cut(s) 156, 230, 382, 524, 586
Hpy188I TCNGA 2 cut(s) 406, 431
Hpy188III TCNNGA 3 cut(s) 35, 111, 398
Hpy8I GTNNAC 5 cut(s) 156, 230, 382, 524, 586
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 4 cut(s) 99, 253, 443, 475
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 5 cut(s) 125, 338, 524, 617, 629
HpyF3I CTNAG 1 cut(s) 367
Hsp92II CATG 3 cut(s) 132, 236, 324
Kpn2I TCCGGA 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 5 cut(s) 31, 40, 352, 394, 484
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 7 cut(s) 48, 92, 282, 341, 383, 549, 557
LweI GCATC 2 cut(s) 134, 309
MaeIII GTNAC 2 cut(s) 290, 359
MalI GATC 5 cut(s) 33, 42, 354, 396, 486
MboI GATC 5 cut(s) 31, 40, 352, 394, 484
MboII GAAGA 2 cut(s) 64, 284
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 4 cut(s) 114, 328, 488, 601
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 4 cut(s) 232, 314, 464, 562
MroI TCCGGA 1 cut(s) 34
MspI CCGG 2 cut(s) 35, 536
NdeI CATATG 1 cut(s) 19
NdeII GATC 5 cut(s) 31, 40, 352, 394, 484
NlaIII CATG 3 cut(s) 132, 236, 324
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 290, 359
PceI AGGCCT 1 cut(s) 242
PfeI GAWTC 2 cut(s) 401, 426
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PspN4I GGNNCC 1 cut(s) 64
RsaI GTAC 2 cut(s) 388, 585
RsaNI GTAC 2 cut(s) 387, 584
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 5 cut(s) 31, 40, 352, 394, 484
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 1 cut(s) 116
SduI GDGCHC 1 cut(s) 526
SetI ASST 5 cut(s) 91, 164, 349, 546, 585
SfaNI GCATC 2 cut(s) 134, 309
Sse9I AATT 4 cut(s) 114, 328, 488, 601
SseBI AGGCCT 1 cut(s) 242
SsiI CCGC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 242
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 110
TasI AATT 4 cut(s) 114, 328, 488, 601
TatI WGTACW 1 cut(s) 386
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 401, 426
TscAI CASTG 1 cut(s) 295
TseFI GTSAC 2 cut(s) 290, 359
Tsp45I GTSAC 2 cut(s) 290, 359
TspDTI ATGAA 3 cut(s) 309, 528, 546
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 1 cut(s) 295
VneI GTGCAC 1 cut(s) 522
XapI RAATTY 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.