FvH4_1g13821

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000369
Physical Location & Seq
Forward (+)
7610472 .. 7611618
1147 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13821.t1

Sequence Viewer

Length: 990 bp
ATGTGTGTTTCAAAGGAGTGGCATGCTCTCATAAATAGCTCTTATTTCACTGCTGTTCATCTCCGACGCTCGGATTCCAATCTCCTTCTCTTCAGCAGAAAGATGGGTGGTAAAGATTCAAATCATTCAATATCATTGCTTCGTGATGAGTCGACACATTTGAGCTTGGATACACCTTTCATAAATCCCAGCATGCCGTGGTTACGTCCTGCGGGATCTAGTAGTGGCTTAGTTTGTCTTAATTTGTTGGGTCTTCGTGTGCGGTCAAATTATATAGTTGTATGGAACCCAGCCACAAAGCAGTTTAGGTTTCTTCCTACGACGGATGAATGGGATGATCATCGTCTACTAGGGTTTGAGTTCTTTCATGACAGTAGAAATTACAAAGTGGTCAACATTCCCAAACCTGGTCGTGACAACACAATTCGAGCTAAAGTCTTCACCAGCAGTACAAAATCTTGGAGAGAAGTAAAAAGCCACTACTACTGTTCATCAGGCGCAATTATCGGGGGTACGTTGTCTTCAATCACCAATGTGGTGCTGTATTCGCCTCTGGGGATAATGAAACAAACATCCCATGTCTTGTCATTCAATTTGCGCGACGAGGTCTTCCATGCGATACCATTACCAGAGAGCAGTATTAGTGGTCAAATTGATCTACTTTCATGGAAAAATTCTTTGCCATTTCTAGGAGGTCCTAAATATAAACCAACTTGTGAGCTTTGGGTGATGACTGAGGAGCCTTCTGCTGGTACTACACAAATCACTTGGGTTAAACAGTTTATACTTGAACCCTCAGCAATGCCGGGATATATAATAGGACCTTGGAAGGATGAATACCTTTTAGGGGATGCTATTTCAGATGATCAGCTGCATTGTTACGATCCTGCGAGCCAGAAATCGACAAGGCTCCCAAAGCATGATCATACACATCGTTTGATTTATGAAAAAGCCATCAACTATGTGGAGACCCTAGTTTCAGTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

330

Amino Acids

37.29

Weight (kDa)

8.2

Isoelectric Point (pI)

44.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 66 - 262 1.6e-15 F-box associated beta propeller domain
FBA_1 PF07734 87 - 264 2.4e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 152, 346, 984
AccII CGCG 1 cut(s) 600
AciI CCGC 2 cut(s) 212, 262
AclWI GGATC 2 cut(s) 223, 878
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 3 cut(s) 451, 514, 754
AfiI CCNNNNNNNGG 5 cut(s) 70, 407, 689, 749, 847
AgsI TTSAA 6 cut(s) 12, 120, 129, 525, 592, 791
AjnI CCWGG 1 cut(s) 406
AleI CACNNNNGTG 1 cut(s) 533
AluBI AGCT 5 cut(s) 39, 165, 431, 721, 871
AluI AGCT 5 cut(s) 39, 165, 431, 721, 871
Alw26I GTCTC 1 cut(s) 962
AlwI GGATC 2 cut(s) 223, 878
ApeKI GCWGC 1 cut(s) 871
ApoI RAATTY 1 cut(s) 673
AspLEI GCGC 2 cut(s) 500, 600
AspS9I GGNCC 2 cut(s) 695, 821
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 3 cut(s) 433, 520, 739
AvaII GGWCC 2 cut(s) 695, 821
BarI GAAGNNNNNNTAC 4 cut(s) 505, 537, 821, 853
BbsI GAAGAC 4 cut(s) 245, 430, 513, 601
BbvCI CCTCAGC 1 cut(s) 796
BbvI GCAGC 1 cut(s) 858
BccI CCATC 2 cut(s) 97, 962
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 408
BciVI GTATCC 1 cut(s) 163
BclI TGATCA 3 cut(s) 337, 865, 922
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 962
BfaI CTAG 4 cut(s) 219, 350, 689, 974
BfuI GTATCC 1 cut(s) 163
BisI GCNGC 1 cut(s) 872
BlsI GCNGC 1 cut(s) 873
Bme1390I CCNGG 2 cut(s) 408, 807
Bme18I GGWCC 2 cut(s) 695, 821
BmgT120I GGNCC 2 cut(s) 695, 821
BmiI GGNNCC 3 cut(s) 287, 741, 911
BmrFI CCNGG 2 cut(s) 408, 807
BmsI GCATC 1 cut(s) 841
BpiI GAAGAC 4 cut(s) 245, 430, 513, 601
Bpu10I CCTNAGC 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 807
BsaBI GATNNNNATC 3 cut(s) 78, 120, 339
BsaI GGTCTC 1 cut(s) 962
BsaJI CCNNGG 2 cut(s) 197, 824
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 407, 689, 749, 847
Bse3DI GCAATG 2 cut(s) 134, 807
Bse8I GATNNNNATC 3 cut(s) 78, 120, 339
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 2 cut(s) 197, 824
BseGI GGATG 5 cut(s) 331, 340, 572, 838, 856
BseJI GATNNNNATC 3 cut(s) 78, 120, 339
BseLI CCNNNNNNNGG 5 cut(s) 70, 407, 689, 749, 847
BseMI GCAATG 2 cut(s) 134, 807
BseMII CTCAG 2 cut(s) 726, 810
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 1 cut(s) 858
BseYI CCCAGC 2 cut(s) 188, 289
Bsh1236I CGCG 1 cut(s) 600
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 5 cut(s) 70, 407, 689, 749, 847
BsmAI GTCTC 1 cut(s) 962
Bso31I GGTCTC 1 cut(s) 962
Bsp143I GATC 6 cut(s) 215, 337, 655, 865, 883, 922
BspACI CCGC 2 cut(s) 212, 262
BspCNI CTCAG 2 cut(s) 727, 809
BspFNI CGCG 1 cut(s) 600
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 3 cut(s) 287, 741, 911
BspPI GGATC 2 cut(s) 223, 878
BspTNI GGTCTC 1 cut(s) 962
BsrDI GCAATG 2 cut(s) 134, 807
BssECI CCNNGG 2 cut(s) 197, 824
BssMI GATC 6 cut(s) 215, 337, 655, 865, 883, 922
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 3 cut(s) 374, 488, 780
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 3 cut(s) 24, 194, 892
BstDEI CTNAG 3 cut(s) 229, 735, 796
BstDSI CCRYGG 1 cut(s) 197
BstF5I GGATG 5 cut(s) 331, 340, 572, 838, 856
BstFNI CGCG 1 cut(s) 600
BstHHI GCGC 2 cut(s) 500, 600
BstKTI GATC 6 cut(s) 218, 340, 658, 868, 886, 925
BstMAI GTCTC 1 cut(s) 962
BstMBI GATC 6 cut(s) 215, 337, 655, 865, 883, 922
BstMWI GCNNNNNNNGC 2 cut(s) 547, 916
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 2 cut(s) 26, 196
BstSCI CCNGG 2 cut(s) 406, 805
BstUI CGCG 1 cut(s) 600
BstV1I GCAGC 1 cut(s) 858
BstV2I GAAGAC 4 cut(s) 245, 430, 513, 601
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuI GTATCC 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 197
BtsCI GGATG 5 cut(s) 331, 340, 572, 838, 856
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 3 cut(s) 24, 194, 892
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 500, 600
Cfr13I GGNCC 2 cut(s) 695, 821
CseI GACGC 1 cut(s) 75
CsiI ACCWGGT 1 cut(s) 406
Csp6I GTAC 3 cut(s) 450, 513, 753
CviAII CATG 7 cut(s) 23, 193, 368, 578, 614, 666, 920
CviQI GTAC 3 cut(s) 450, 513, 753
DdeI CTNAG 3 cut(s) 229, 735, 796
DpnI GATC 6 cut(s) 217, 339, 657, 867, 885, 924
DpnII GATC 6 cut(s) 215, 337, 655, 865, 883, 922
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 824
Eco31I GGTCTC 1 cut(s) 962
Eco47I GGWCC 2 cut(s) 695, 821
Eco57I CTGAAG 1 cut(s) 76
EcoO109I RGGNCCY 2 cut(s) 695, 821
EcoRII CCWGG 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 824
ErhI CCWWGG 1 cut(s) 824
FaeI CATG 7 cut(s) 26, 196, 371, 581, 617, 669, 923
FatI CATG 7 cut(s) 22, 192, 367, 577, 613, 665, 919
FauI CCCGC 1 cut(s) 205
FbaI TGATCA 3 cut(s) 337, 865, 922
FblI GTMKAC 3 cut(s) 152, 346, 984
Fnu4HI GCNGC 1 cut(s) 872
FokI GGATG 5 cut(s) 338, 347, 559, 845, 863
Fsp4HI GCNGC 1 cut(s) 872
FspBI CTAG 4 cut(s) 219, 350, 689, 974
GlaI GCGC 2 cut(s) 499, 599
GluI GCNGC 1 cut(s) 872
GsaI CCCAGC 2 cut(s) 192, 293
HapII CCGG 1 cut(s) 806
HgaI GACGC 1 cut(s) 75
HhaI GCGC 2 cut(s) 500, 600
Hin1II CATG 7 cut(s) 26, 196, 371, 581, 617, 669, 923
Hin6I GCGC 2 cut(s) 498, 598
HinP1I GCGC 2 cut(s) 498, 598
HincII GTYRAC 2 cut(s) 153, 394
HindII GTYRAC 2 cut(s) 153, 394
HinfI GANTC 3 cut(s) 74, 116, 149
HpaII CCGG 1 cut(s) 806
HphI GGTGA 3 cut(s) 433, 520, 739
Hpy166II GTNNAC 4 cut(s) 153, 347, 394, 985
Hpy188I TCNGA 3 cut(s) 65, 73, 862
Hpy188III TCNNGA 3 cut(s) 143, 368, 413
Hpy8I GTNNAC 4 cut(s) 153, 347, 394, 985
Hpy99I CGWCG 3 cut(s) 69, 325, 605
HpyAV CCTTC 3 cut(s) 95, 753, 823
HpyCH4III ACNGT 3 cut(s) 374, 488, 780
HpyCH4IV ACGT 2 cut(s) 205, 515
HpyCH4V TGCA 1 cut(s) 874
HpyF10VI GCNNNNNNNGC 2 cut(s) 547, 916
HpyF3I CTNAG 3 cut(s) 229, 735, 796
HpySE526I ACGT 2 cut(s) 205, 515
Hsp92II CATG 7 cut(s) 26, 196, 371, 581, 617, 669, 923
HspAI GCGC 2 cut(s) 498, 598
Ksp22I TGATCA 3 cut(s) 337, 865, 922
Kzo9I GATC 6 cut(s) 215, 337, 655, 865, 883, 922
LmnI GCTCC 2 cut(s) 739, 915
Lsp1109I GCAGC 1 cut(s) 858
LweI GCATC 1 cut(s) 841
MabI ACCWGGT 1 cut(s) 406
MaeI CTAG 4 cut(s) 219, 350, 689, 974
MaeII ACGT 2 cut(s) 205, 515
MaeIII GTNAC 3 cut(s) 201, 413, 878
MalI GATC 6 cut(s) 217, 339, 657, 867, 885, 924
MboI GATC 6 cut(s) 215, 337, 655, 865, 883, 922
MboII GAAGA 6 cut(s) 82, 245, 305, 430, 513, 601
MflI RGATCY 1 cut(s) 215
MluCI AATT 8 cut(s) 241, 268, 379, 423, 501, 592, 651, 673
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 5 cut(s) 561, 598, 686, 730, 805
MseI TTAA 2 cut(s) 240, 774
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 871
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 2 cut(s) 408, 807
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 600
MwoI GCNNNNNNNGC 2 cut(s) 547, 916
NciI CCSGG 1 cut(s) 807
NdeII GATC 6 cut(s) 215, 337, 655, 865, 883, 922
NlaIII CATG 7 cut(s) 26, 196, 371, 581, 617, 669, 923
NlaIV GGNNCC 3 cut(s) 287, 741, 911
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 2 cut(s) 26, 196
OliI CACNNNNGTG 1 cut(s) 533
PaeI GCATGC 2 cut(s) 26, 196
PagI TCATGA 1 cut(s) 367
PfeI GAWTC 2 cut(s) 74, 116
PflFI GACNNNGTC 1 cut(s) 605
PkrI GCNGC 1 cut(s) 873
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 2 cut(s) 695, 821
Psp5II RGGWCCY 2 cut(s) 695, 821
Psp6I CCWGG 1 cut(s) 406
PspFI CCCAGC 2 cut(s) 188, 289
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 287, 741, 911
PspPI GGNCC 2 cut(s) 695, 821
PspPPI RGGWCCY 2 cut(s) 695, 821
PsuI RGATCY 1 cut(s) 215
PsyI GACNNNGTC 1 cut(s) 605
PvuII CAGCTG 1 cut(s) 871
RsaI GTAC 3 cut(s) 451, 514, 754
RsaNI GTAC 3 cut(s) 450, 513, 753
RseI CAYNNNNRTG 1 cut(s) 533
SalI GTCGAC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 240, 774
SatI GCNGC 1 cut(s) 872
Sau3AI GATC 6 cut(s) 215, 337, 655, 865, 883, 922
Sau96I GGNCC 2 cut(s) 695, 821
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 408, 807
SexAI ACCWGGT 1 cut(s) 406
SfaNI GCATC 1 cut(s) 841
SinI GGWCC 2 cut(s) 695, 821
SmiMI CAYNNNNRTG 1 cut(s) 533
SphI GCATGC 2 cut(s) 26, 196
Sse9I AATT 8 cut(s) 241, 268, 379, 423, 501, 592, 651, 673
SsiI CCGC 2 cut(s) 212, 262
SspMI CTAG 4 cut(s) 219, 350, 689, 974
StyD4I CCNGG 2 cut(s) 406, 805
StyI CCWWGG 1 cut(s) 824
TaaI ACNGT 3 cut(s) 374, 488, 780
TaiI ACGT 2 cut(s) 208, 518
TaqI TCGA 3 cut(s) 152, 427, 902
TasI AATT 8 cut(s) 241, 268, 379, 423, 501, 592, 651, 673
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 2 cut(s) 74, 116
Tru1I TTAA 2 cut(s) 240, 774
Tru9I TTAA 2 cut(s) 240, 774
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 871
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 9 cut(s) 47, 169, 342, 356, 480, 578, 654, 849, 960
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 55
Tth111I GACNNNGTC 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 695, 821
XapI RAATTY 1 cut(s) 673
XceI RCATGY 2 cut(s) 26, 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 961
XmiI GTMKAC 3 cut(s) 152, 346, 984
XspI CTAG 4 cut(s) 219, 350, 689, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.