Rh1DG054100

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000369
Physical Location & Seq
Reverse (-)
8637568 .. 8638434
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG054100.1

Sequence Viewer

Length: 867 bp
ATGCTTGGAGATGAAGCAGCAGACCTTGTGAGTATAGATTTACCTATCTTGTCGAACTCCTTCAAGTTTACAAACATTGTAGGATCTAGTAATGGCTTAGTATGTCTTGTAGCTAGGGTGAAAAAGAAAACACGAAAGTTTATGGATAGTGCAGAAATAATAATATGGAACCCAGCAACAAAACAGTTTCGAAGTCTTCCTAAACCTGTACTTGAGGAAAATTTCCATCGTTTTGATCGTCCTACTCTTGGTTTTGGATTTAGTGATGATAACACCGATGATTACAAATTAGTTAATATTTTCCATAAGCAAGTACAAGTCTTCACCCGAAGTACAAATTCTTGGAGAGAAGTCGAAGGCAAAGGGTATCCATCATGTAAATATTGTTATGGAGATTTTTGGATTTCGTTGAAGGGAGTGCTGTATTGGTCGGCAAGCACCGATAGATCCAAGGGCCGTTTTGTTTTGTCTTTCAATCTGCGTGATGAGGTATTTCATGTCATACAATTACCATCCGGGAATGTTTGGTACTCTCGACTGCTTCTGTGGAAAAACTCACTAGCAATCGTGAGCAAGAATCAGGTTTGGGCGGCGAAGACCGATGACTCTGATGAGAGTGGTGACAATAACAAAATCGTTTGGACCAAACAATTTAGCATTGATTTTTCAATATCACGATGTGAAGAGGTCTTTGGAATTTGGAAGGATCAAGTACTAATTCGGAGACATATCTCGAGATATGACAGGCTTTATTTGTATGACCCTATAACCAAGGAAAGGGGAAAGTTGCTTCAGAAACCTGAAGAAAAGAACTATTATGGTTATGGTCAACTAGTCAATTATGTGGAGAGCCTAGCTTTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

288

Amino Acids

33.45

Weight (kDa)

8.97

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 19 - 193 2.2e-21 F-box associated beta propeller domain
FBA_1 PF07734 49 - 286 1.8e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 590
AclWI GGATC 3 cut(s) 91, 441, 714
AcsI RAATTY 3 cut(s) 220, 337, 696
AcuI CTGAAG 2 cut(s) 776, 822
AdeI CACNNNGTG 1 cut(s) 680
AfaI GTAC 5 cut(s) 210, 315, 334, 530, 714
AfiI CCNNNNNNNGG 2 cut(s) 248, 777
AgsI TTSAA 4 cut(s) 64, 412, 475, 669
AhlI ACTAGT 1 cut(s) 832
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AluBI AGCT 2 cut(s) 113, 857
AluI AGCT 2 cut(s) 113, 857
Alw26I GTCTC 1 cut(s) 718
AlwI GGATC 3 cut(s) 91, 441, 714
Ama87I CYCGRG 1 cut(s) 733
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 3 cut(s) 220, 337, 696
Asp700I GAANNNNTTC 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 454, 642
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 3 cut(s) 130, 316, 632
AsuII TTCGAA 1 cut(s) 190
AvaI CYCGRG 1 cut(s) 733
AvaII GGWCC 1 cut(s) 642
BbsI GAAGAC 3 cut(s) 188, 313, 602
BbvI GCAGC 1 cut(s) 29
BccI CCATC 3 cut(s) 234, 379, 520
BceAI ACGGC 1 cut(s) 441
BciVI GTATCC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 1 cut(s) 718
BcuI ACTAGT 1 cut(s) 832
BfaI CTAG 5 cut(s) 87, 114, 560, 833, 854
BfuI GTATCC 1 cut(s) 378
BisI GCNGC 2 cut(s) 18, 591
BlsI GCNGC 2 cut(s) 19, 592
BmcAI AGTACT 1 cut(s) 714
Bme1390I CCNGG 1 cut(s) 517
Bme18I GGWCC 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 454, 642
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 517
BpiI GAAGAC 3 cut(s) 188, 313, 602
Bpu14I TTCGAA 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 517
BsaJI CCNNGG 2 cut(s) 450, 771
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 777
BseDI CCNNGG 2 cut(s) 450, 771
BseGI GGATG 1 cut(s) 512
BseLI CCNNNNNNNGG 2 cut(s) 248, 777
BseXI GCAGC 1 cut(s) 29
BseYI CCCAGC 1 cut(s) 172
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 456
BsiHKCI CYCGRG 1 cut(s) 733
BsiSI CCGG 1 cut(s) 516
BslI CCNNNNNNNGG 2 cut(s) 248, 777
BsmAI GTCTC 1 cut(s) 718
BsnI GGCC 1 cut(s) 456
BsoBI CYCGRG 1 cut(s) 733
Bsp119I TTCGAA 1 cut(s) 190
Bsp143I GATC 4 cut(s) 83, 235, 446, 706
BspACI CCGC 1 cut(s) 590
BspANI GGCC 1 cut(s) 456
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 3 cut(s) 91, 441, 714
BspT104I TTCGAA 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 450, 771
BssMI GATC 4 cut(s) 83, 235, 446, 706
BssT1I CCWWGG 2 cut(s) 450, 771
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 678
BstBI TTCGAA 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 512
BstKTI GATC 4 cut(s) 86, 238, 449, 709
BstMAI GTCTC 1 cut(s) 718
BstMBI GATC 4 cut(s) 83, 235, 446, 706
BstSCI CCNGG 1 cut(s) 515
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 3 cut(s) 188, 313, 602
BstX2I RGATCY 2 cut(s) 83, 446
BstYI RGATCY 2 cut(s) 83, 446
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 1 cut(s) 456
BtsCI GGATG 1 cut(s) 512
Cac8I GCNNGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 454, 642
Csp6I GTAC 5 cut(s) 209, 314, 333, 529, 713
CviAII CATG 2 cut(s) 375, 497
CviJI RGCY 6 cut(s) 96, 113, 456, 748, 852, 857
CviKI_1 RGCY 6 cut(s) 96, 113, 456, 748, 852, 857
CviQI GTAC 5 cut(s) 209, 314, 333, 529, 713
DdeI CTNAG 1 cut(s) 97
DpnI GATC 4 cut(s) 85, 237, 448, 708
DpnII GATC 4 cut(s) 83, 235, 446, 706
DraIII CACNNNGTG 1 cut(s) 680
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
Eco130I CCWWGG 2 cut(s) 450, 771
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 2 cut(s) 776, 822
Eco88I CYCGRG 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 450, 771
ErhI CCWWGG 2 cut(s) 450, 771
FaeI CATG 2 cut(s) 378, 500
FatI CATG 2 cut(s) 374, 496
Fnu4HI GCNGC 2 cut(s) 18, 591
FokI GGATG 1 cut(s) 499
Fsp4HI GCNGC 2 cut(s) 18, 591
FspBI CTAG 5 cut(s) 87, 114, 560, 833, 854
GluI GCNGC 2 cut(s) 18, 591
GsaI CCCAGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 516
Hin1II CATG 2 cut(s) 378, 500
HincII GTYRAC 1 cut(s) 830
HindII GTYRAC 1 cut(s) 830
HinfI GANTC 2 cut(s) 577, 605
HpaII CCGG 1 cut(s) 516
HphI GGTGA 3 cut(s) 130, 316, 632
Hpy166II GTNNAC 2 cut(s) 69, 830
Hpy188I TCNGA 3 cut(s) 610, 723, 795
Hpy188III TCNNGA 5 cut(s) 534, 568, 675, 733, 735
Hpy8I GTNNAC 2 cut(s) 69, 830
HpyAV CCTTC 4 cut(s) 70, 350, 406, 697
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 2 cut(s) 378, 500
Kzo9I GATC 4 cut(s) 83, 235, 446, 706
LpnPI CCDG 6 cut(s) 186, 219, 529, 566, 730, 813
Lsp1109I GCAGC 1 cut(s) 29
MaeI CTAG 5 cut(s) 87, 114, 560, 833, 854
MaeIII GTNAC 1 cut(s) 620
MalI GATC 4 cut(s) 85, 237, 448, 708
MboI GATC 4 cut(s) 83, 235, 446, 706
MboII GAAGA 5 cut(s) 188, 313, 607, 695, 815
MflI RGATCY 2 cut(s) 83, 446
MluCI AATT 8 cut(s) 220, 287, 337, 506, 650, 696, 717, 838
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 3 cut(s) 208, 481, 679
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 1 cut(s) 294
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 517
NciI CCSGG 1 cut(s) 517
NdeII GATC 4 cut(s) 83, 235, 446, 706
NlaIII CATG 2 cut(s) 378, 500
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 620
NspV TTCGAA 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 577
PfoI TCCNGGA 1 cut(s) 515
PkrI GCNGC 2 cut(s) 19, 592
PleI GAGTC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 599
PspFI CCCAGC 1 cut(s) 172
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 454, 642
PsuI RGATCY 2 cut(s) 83, 446
RsaI GTAC 5 cut(s) 210, 315, 334, 530, 714
RsaNI GTAC 5 cut(s) 209, 314, 333, 529, 713
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 2 cut(s) 18, 591
Sau3AI GATC 4 cut(s) 83, 235, 446, 706
Sau96I GGNCC 2 cut(s) 454, 642
ScaI AGTACT 1 cut(s) 714
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 517
SetI ASST 9 cut(s) 27, 46, 115, 208, 492, 585, 690, 802, 859
Sfr274I CTCGAG 1 cut(s) 733
SfuI TTCGAA 1 cut(s) 190
SinI GGWCC 1 cut(s) 642
SlaI CTCGAG 1 cut(s) 733
SmlI CTYRAG 2 cut(s) 212, 733
SmoI CTYRAG 2 cut(s) 212, 733
SpeI ACTAGT 1 cut(s) 832
Sse9I AATT 8 cut(s) 220, 287, 337, 506, 650, 696, 717, 838
SsiI CCGC 1 cut(s) 590
SspI AATATT 2 cut(s) 298, 383
SspMI CTAG 5 cut(s) 87, 114, 560, 833, 854
StyD4I CCNGG 1 cut(s) 515
StyI CCWWGG 2 cut(s) 450, 771
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 5 cut(s) 53, 190, 354, 535, 734
TaqII GACCGA 1 cut(s) 614
TasI AATT 8 cut(s) 220, 287, 337, 506, 650, 696, 717, 838
TatI WGTACW 4 cut(s) 208, 313, 332, 712
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseFI GTSAC 1 cut(s) 620
TseI GCWGC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 620
TspDTI ATGAA 2 cut(s) 27, 485
VpaK11BI GGWCC 1 cut(s) 642
XapI RAATTY 3 cut(s) 220, 337, 696
XhoI CTCGAG 1 cut(s) 733
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 5 cut(s) 87, 114, 560, 833, 854
ZrmI AGTACT 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.