Rorug06G0191500

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000369
Physical Location & Seq
Forward (+)
30779746 .. 30781849
2104 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0191500.1

Sequence Viewer

Length: 540 bp
ATGGACGAAATCGAGGAAATGGGTCCGATATCCGATGGTTCGAATCCTCCTCCGCAACCCAAAGCGAGGATGAAGGTTCCAGAAGTAGAGGTCCGGCTGTACCGACAAGGCAAAGGTCCGATCGACTCGTTCAAGTCATGCCTCGGGGGTTGGGACCAGAACCAGTTGGAGGTTCAAGACATTCTCGACAAATACGGCTTCAAATCCCTTTACGCCTTCAATCCCCAGTCGGGTCGCGGCGTCCCCATCCGCTTTAACCCCCGCAACGGACGCTCCATGCTGCCCTATAGAGACGGATCCGAGGTTTACATCGACGGCGAGCCCAAGGATTCCTTGATCAAACCAGTGACAAAGATCTTGCTTGGAGTAGCTGTTATGACTATCCTGATAACATTGGTTATGAAGGATCCTCCAGAGTTCATCCAAAAATTTAATTTTTTTGGGGGGAACTTCCCTCCTTGGATCCTTGCTCTTGTGGTAATAGTTTTTACACGAATGAGGAAGAGAACCAGGGATTTCCTGAAAAAACTTGGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

179

Amino Acids

20.42

Weight (kDa)

9.46

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 53, 237, 250, 262
AclWI GGATC 6 cut(s) 291, 304, 401, 414, 457, 470
AcsI RAATTY 1 cut(s) 428
AcyI GRCGYC 1 cut(s) 240
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
AgsI TTSAA 4 cut(s) 133, 176, 202, 220
AjnI CCWGG 1 cut(s) 509
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 285
AlwI GGATC 6 cut(s) 291, 304, 401, 414, 457, 470
Ama87I CYCGRG 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 428
AspS9I GGNCC 4 cut(s) 23, 91, 116, 154
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 1 cut(s) 143
AvaII GGWCC 4 cut(s) 23, 91, 116, 154
BamHI GGATCC 3 cut(s) 296, 406, 462
BanII GRGCYC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 267
BccI CCATC 2 cut(s) 29, 254
BceAI ACGGC 2 cut(s) 211, 331
BciT130I CCWGG 1 cut(s) 511
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 1 cut(s) 354
BisI GCNGC 2 cut(s) 238, 281
BlsI GCNGC 2 cut(s) 239, 282
Bme1390I CCNGG 1 cut(s) 511
Bme18I GGWCC 4 cut(s) 23, 91, 116, 154
BmeT110I CYCGRG 1 cut(s) 143
BmgT120I GGNCC 4 cut(s) 23, 91, 116, 154
BmiI GGNNCC 6 cut(s) 24, 78, 155, 298, 408, 464
BmrFI CCNGG 1 cut(s) 511
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 5 cut(s) 142, 300, 324, 458, 510
BsaXI ACNNNNNCTCC 4 cut(s) 257, 287, 357, 387
Bsc4I CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
Bse1I ACTGG 3 cut(s) 163, 226, 344
BseBI CCWGG 1 cut(s) 511
BseDI CCNNGG 5 cut(s) 142, 300, 324, 458, 510
BseGI GGATG 3 cut(s) 75, 246, 420
BseLI CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
BseNI ACTGG 3 cut(s) 163, 226, 344
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 123
BsiEI CGRYCG 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 143
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 2 cut(s) 167, 227
BslI CCNNNNNNNGG 4 cut(s) 66, 169, 230, 266
BsmAI GTCTC 1 cut(s) 285
BsmBI CGTCTC 1 cut(s) 285
BsmFI GGGAC 2 cut(s) 167, 227
BsoBI CYCGRG 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 6 cut(s) 120, 296, 336, 354, 406, 462
BspACI CCGC 4 cut(s) 53, 237, 250, 262
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 6 cut(s) 24, 78, 155, 298, 408, 464
BspPI GGATC 6 cut(s) 291, 304, 401, 414, 457, 470
BspT104I TTCGAA 1 cut(s) 41
BsrI ACTGG 3 cut(s) 163, 226, 344
BssECI CCNNGG 5 cut(s) 142, 300, 324, 458, 510
BssMI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 2 cut(s) 324, 458
Bst2UI CCWGG 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 320
BstF5I GGATG 3 cut(s) 75, 246, 420
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 6 cut(s) 123, 299, 339, 357, 409, 465
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 509
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 267
BstX2I RGATCY 4 cut(s) 296, 354, 406, 462
BstYI RGATCY 4 cut(s) 296, 354, 406, 462
BtsCI GGATG 3 cut(s) 75, 246, 420
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 1 cut(s) 320
Cfr13I GGNCC 4 cut(s) 23, 91, 116, 154
CseI GACGC 2 cut(s) 229, 279
Csp6I GTAC 1 cut(s) 100
CviAII CATG 2 cut(s) 138, 277
CviJI RGCY 4 cut(s) 97, 198, 322, 371
CviKI_1 RGCY 4 cut(s) 97, 198, 322, 371
CviQI GTAC 1 cut(s) 100
DpnI GATC 6 cut(s) 122, 298, 338, 356, 408, 464
DpnII GATC 6 cut(s) 120, 296, 336, 354, 406, 462
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 324, 458
Eco24I GRGCYC 1 cut(s) 324
Eco32I GATATC 1 cut(s) 30
Eco47I GGWCC 4 cut(s) 23, 91, 116, 154
Eco88I CYCGRG 1 cut(s) 143
EcoRII CCWGG 1 cut(s) 509
EcoRV GATATC 1 cut(s) 30
EcoT14I CCWWGG 2 cut(s) 324, 458
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 324, 458
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 2 cut(s) 141, 280
FaiI YATR 5 cut(s) 139, 278, 288, 377, 401
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 2 cut(s) 167, 227
FatI CATG 2 cut(s) 137, 276
FauI CCCGC 1 cut(s) 269
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 238, 281
FokI GGATG 3 cut(s) 82, 233, 407
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 238, 281
GluI GCNGC 2 cut(s) 238, 281
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 1 cut(s) 94
HgaI GACGC 2 cut(s) 229, 279
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 141, 280
HinfI GANTC 3 cut(s) 43, 125, 329
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 4 cut(s) 27, 34, 120, 301
Hpy188III TCNNGA 6 cut(s) 80, 176, 185, 385, 413, 520
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 3 cut(s) 67, 226, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 141, 280
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 6 cut(s) 120, 296, 336, 354, 406, 462
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 346
MalI GATC 6 cut(s) 122, 298, 338, 356, 408, 464
MboI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
MboII GAAGA 1 cut(s) 514
MflI RGATCY 4 cut(s) 296, 354, 406, 462
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 428, 433
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 147
MseI TTAA 2 cut(s) 255, 432
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 511
MvaI CCWGG 1 cut(s) 511
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 270
NdeII GATC 6 cut(s) 120, 296, 336, 354, 406, 462
NlaIII CATG 2 cut(s) 141, 280
NlaIV GGNNCC 6 cut(s) 24, 78, 155, 298, 408, 464
NmuCI GTSAC 1 cut(s) 346
NspV TTCGAA 1 cut(s) 41
PfeI GAWTC 2 cut(s) 43, 329
PkrI GCNGC 2 cut(s) 239, 282
Ple19I CGATCG 1 cut(s) 123
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 509
PspGI CCWGG 1 cut(s) 509
PspN4I GGNNCC 6 cut(s) 24, 78, 155, 298, 408, 464
PspPI GGNCC 4 cut(s) 23, 91, 116, 154
PsuI RGATCY 4 cut(s) 296, 354, 406, 462
PvuI CGATCG 1 cut(s) 123
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 2 cut(s) 255, 432
SatI GCNGC 2 cut(s) 238, 281
Sau3AI GATC 6 cut(s) 120, 296, 336, 354, 406, 462
Sau96I GGNCC 4 cut(s) 23, 91, 116, 154
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 511
SduI GDGCHC 1 cut(s) 324
SetI ASST 6 cut(s) 78, 93, 118, 174, 306, 373
SfcI CTRYAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 4 cut(s) 23, 91, 116, 154
Sse9I AATT 2 cut(s) 428, 433
SsiI CCGC 4 cut(s) 53, 237, 250, 262
StyD4I CCNGG 1 cut(s) 509
StyI CCWWGG 2 cut(s) 324, 458
TaqI TCGA 5 cut(s) 12, 41, 123, 186, 312
TasI AATT 2 cut(s) 428, 433
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 2 cut(s) 43, 329
Tru1I TTAA 2 cut(s) 255, 432
Tru9I TTAA 2 cut(s) 255, 432
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 280
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 86, 409, 416
TspGWI ACGGA 2 cut(s) 282, 309
TspRI CASTG 1 cut(s) 351
VpaK11BI GGWCC 4 cut(s) 23, 91, 116, 154
XapI RAATTY 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.