Rw2G011170

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000369
Physical Location & Seq
Reverse (-)
11316909 .. 11320188
3280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G011170.1

Sequence Viewer

Length: 777 bp
ATGCTTAGCTCTTCTTTTGTTTTTGAGACTCTGAGGTTGGTCTATGGTGCTACGCTAAATTGTTTTTTTCCATTTCCATTCATAAGATATATAGTTGTATGGAACCCAGCTACAAAACAGTTTAGGTTTCTTCCAAATAAGACAGCTTATCATTCTCTAATCTCTAGTACTAGCATTCTCAAACATGATGATGACAACATTTTTCGAGCTAAGGTCTTCACCCGAAGTTCAAATTGTTGGAGAGAAGTCAAAAGCCACTGCTGTTCATCACTTGGGGTTGTATACAAAACGTTTTCTTCAATCACCTTGAATGGGGTGCTGTATTCGCAGCTGTGGACAAAGAATGATAGATTCCATGTCTTGTCCTTCAACTTCAGCGATGAGGTCTTCCGTGTGATACCATTACCAGAGAACAAGAGCATTAGTCGAACAAGTGCACTCTTTTCATGGAAAAATTCATTGGCATTTCTAGGAGGTCATGAACAAGAACCAGACTGTGAGCTTTGGATGATGACTGAGGAGCCTTCTGCTACTACACGAATGCCTTGGGTTAAACAGCTTATCCTCAAACCCTCATCACTGTCAAGATATATCTTTGGATCTTGGAAGGATGAATATCTTTTATGGAGAGATACAAATGATGAAGACGTGCATTTTTACAATCCTACGAGCCAGAAATTGACAAAGCTTCCACAACATGATCAAACACATGGTTACAAATATGATCAAGCAATCAACTATATATGTGGAGAGCCTAGTTTCAGTAGACTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

258

Amino Acids

30.16

Weight (kDa)

8.66

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 31 - 191 1.7e-11 F-box associated beta propeller domain
FBA_1 PF07734 31 - 190 4.4e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 282, 766
AclI AACGTT 1 cut(s) 290
AclWI GGATC 1 cut(s) 607
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 4 cut(s) 231, 300, 310, 370
AjiI CACGTC 1 cut(s) 649
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 9 cut(s) 9, 110, 146, 209, 331, 502, 559, 688, 774
AluI AGCT 9 cut(s) 9, 110, 146, 209, 331, 502, 559, 688, 774
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 435
AlwI GGATC 1 cut(s) 607
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 328
ApoI RAATTY 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 211, 295
BaeGI GKGCMC 1 cut(s) 439
BbsI GAAGAC 3 cut(s) 208, 379, 651
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 340
BclI TGATCA 2 cut(s) 700, 724
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 4 cut(s) 165, 171, 470, 756
BisI GCNGC 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 330
BmcAI AGTACT 1 cut(s) 169
BmgBI CACGTC 1 cut(s) 649
BmiI GGNNCC 2 cut(s) 104, 522
BpiI GAAGAC 3 cut(s) 208, 379, 651
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 5
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 1 cut(s) 545
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 615
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 513, 616
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 1 cut(s) 312
BseMII CTCAG 3 cut(s) 23, 507, 761
BseRI GAGGAG 1 cut(s) 533
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 1 cut(s) 340
BseYI CCCAGC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 439
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 20
BsmI GAATGC 2 cut(s) 174, 546
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 3 cut(s) 599, 700, 724
Bsp1720I GCTNAGC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 24, 508, 762
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 104, 522
BspPI GGATC 1 cut(s) 607
BspQI GCTCTTC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 3 cut(s) 599, 700, 724
BssNAI GTATAC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 545
Bst1107I GTATAC 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 120, 497, 582
Bst6I CTCTTC 1 cut(s) 16
BstDEI CTNAG 5 cut(s) 5, 32, 210, 516, 770
BstF5I GGATG 2 cut(s) 513, 616
BstKTI GATC 3 cut(s) 602, 703, 727
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 3 cut(s) 599, 700, 724
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 340
BstV2I GAAGAC 3 cut(s) 208, 379, 651
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BstZ17I GTATAC 1 cut(s) 283
BtgZI GCGATG 1 cut(s) 393
BtrI CACGTC 1 cut(s) 649
BtsCI GGATG 2 cut(s) 513, 616
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 2 cut(s) 256, 578
CciI TCATGA 1 cut(s) 478
Csp6I GTAC 1 cut(s) 168
CviAII CATG 6 cut(s) 185, 356, 447, 479, 698, 710
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 5 cut(s) 5, 32, 210, 516, 770
DpnI GATC 3 cut(s) 601, 702, 726
DpnII GATC 3 cut(s) 599, 700, 724
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 545
Eco57I CTGAAG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 545
FaeI CATG 6 cut(s) 188, 359, 450, 482, 701, 713
FatI CATG 6 cut(s) 184, 355, 446, 478, 697, 709
FbaI TGATCA 2 cut(s) 700, 724
FblI GTMKAC 2 cut(s) 282, 766
Fnu4HI GCNGC 1 cut(s) 329
FokI GGATG 2 cut(s) 520, 623
Fsp4HI GCNGC 1 cut(s) 329
FspBI CTAG 4 cut(s) 165, 171, 470, 756
GluI GCNGC 1 cut(s) 329
GsaI CCCAGC 1 cut(s) 110
Hin1II CATG 6 cut(s) 188, 359, 450, 482, 701, 713
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 2 cut(s) 28, 351
HphI GGTGA 2 cut(s) 211, 295
Hpy166II GTNNAC 4 cut(s) 283, 336, 437, 767
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 2 cut(s) 479, 585
Hpy8I GTNNAC 4 cut(s) 283, 336, 437, 767
HpyAV CCTTC 3 cut(s) 376, 534, 601
HpyCH4III ACNGT 3 cut(s) 120, 497, 582
HpyCH4IV ACGT 2 cut(s) 290, 648
HpyCH4V TGCA 2 cut(s) 437, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 5 cut(s) 5, 32, 210, 516, 770
HpySE526I ACGT 2 cut(s) 290, 648
Hsp92II CATG 6 cut(s) 188, 359, 450, 482, 701, 713
Ksp22I TGATCA 2 cut(s) 700, 724
Kzo9I GATC 3 cut(s) 599, 700, 724
LguI GCTCTTC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 4 cut(s) 120, 420, 504, 686
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 4 cut(s) 165, 171, 470, 756
MaeII ACGT 2 cut(s) 290, 648
MaeIII GTNAC 1 cut(s) 713
MalI GATC 3 cut(s) 601, 702, 726
MboI GATC 3 cut(s) 599, 700, 724
MboII GAAGA 6 cut(s) 3, 122, 208, 288, 379, 656
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 4 cut(s) 58, 232, 454, 677
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 218
MnlI CCTC 6 cut(s) 27, 376, 467, 511, 575, 583
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 331
Mva1269I GAATGC 2 cut(s) 174, 546
MwoI GCNNNNNNNGC 1 cut(s) 325
NdeII GATC 3 cut(s) 599, 700, 724
NlaIII CATG 6 cut(s) 188, 359, 450, 482, 701, 713
NlaIV GGNNCC 2 cut(s) 104, 522
PagI TCATGA 1 cut(s) 478
PciSI GCTCTTC 1 cut(s) 16
PctI GAATGC 2 cut(s) 174, 546
PfeI GAWTC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 330
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 290
PspFI CCCAGC 1 cut(s) 106
PspN4I GGNNCC 2 cut(s) 104, 522
PsuI RGATCY 1 cut(s) 599
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 1 cut(s) 189
SapI GCTCTTC 1 cut(s) 16
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 1 cut(s) 329
Sau3AI GATC 3 cut(s) 599, 700, 724
ScaI AGTACT 1 cut(s) 169
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 189
Sse9I AATT 4 cut(s) 58, 232, 454, 677
SspMI CTAG 4 cut(s) 165, 171, 470, 756
StyI CCWWGG 1 cut(s) 545
TaaI ACNGT 3 cut(s) 120, 497, 582
TaiI ACGT 2 cut(s) 293, 651
TaqI TCGA 2 cut(s) 205, 427
TasI AATT 4 cut(s) 58, 232, 454, 677
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 2 cut(s) 263, 585
TseI GCWGC 1 cut(s) 328
TspDTI ATGAA 7 cut(s) 70, 255, 435, 447, 495, 627, 657
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 2 cut(s) 263, 585
VneI GTGCAC 1 cut(s) 435
XapI RAATTY 1 cut(s) 454
XmiI GTMKAC 2 cut(s) 282, 766
XspI CTAG 4 cut(s) 165, 171, 470, 756
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.