PHD and RING finger domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| F-box | PF00646 | 55 - 85 | 8.2e-07 | F-box domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 385 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 347 |
| AatII | GACGTC | 1 cut(s) | 964 |
| Acc36I | ACCTGC | 1 cut(s) | 385 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 625, 1100 |
| AccI | GTMKAC | 4 cut(s) | 283, 310, 351, 828 |
| AciI | CCGC | 2 cut(s) | 585, 780 |
| AclWI | GGATC | 4 cut(s) | 111, 399, 430, 790 |
| AcyI | GRCGYC | 2 cut(s) | 961, 1021 |
| AfaI | GTAC | 4 cut(s) | 66, 138, 953, 1009 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 596, 625, 1100, 1144 |
| AgsI | TTSAA | 5 cut(s) | 562, 571, 580, 614, 657 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 194 |
| AjnI | CCWGG | 1 cut(s) | 387 |
| AleI | CACNNNNGTG | 1 cut(s) | 300 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 542, 574 |
| AluBI | AGCT | 1 cut(s) | 906 |
| AluI | AGCT | 1 cut(s) | 906 |
| Alw26I | GTCTC | 1 cut(s) | 709 |
| AlwI | GGATC | 4 cut(s) | 111, 399, 430, 790 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1034 |
| AoxI | GGCC | 2 cut(s) | 582, 1003 |
| AsuC2I | CCSGG | 1 cut(s) | 844 |
| AsuHPI | GGTGA | 3 cut(s) | 366, 658, 736 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 48, 80, 120, 152 |
| BbsI | GAAGAC | 2 cut(s) | 679, 682 |
| BccI | CCATC | 4 cut(s) | 76, 662, 760, 942 |
| BceAI | ACGGC | 2 cut(s) | 990, 1034 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 613, 647 |
| BciT130I | CCWGG | 1 cut(s) | 389 |
| BclI | TGATCA | 1 cut(s) | 883 |
| BcnI | CCSGG | 1 cut(s) | 844 |
| BcoDI | GTCTC | 1 cut(s) | 709 |
| BfaI | CTAG | 3 cut(s) | 876, 903, 1139 |
| BfuAI | ACCTGC | 1 cut(s) | 385 |
| BglII | AGATCT | 2 cut(s) | 91, 163 |
| BisI | GCNGC | 1 cut(s) | 585 |
| BlsI | GCNGC | 1 cut(s) | 586 |
| Bme1390I | CCNGG | 2 cut(s) | 389, 844 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 194 |
| BmiI | GGNNCC | 1 cut(s) | 494 |
| BmrFI | CCNGG | 2 cut(s) | 389, 844 |
| BmrI | ACTGGG | 1 cut(s) | 491 |
| BmsI | GCATC | 2 cut(s) | 451, 1071 |
| BmuI | ACTGGG | 1 cut(s) | 491 |
| BpiI | GAAGAC | 2 cut(s) | 679, 682 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 93, 125, 165, 197 |
| Bpu10I | CCTNAGC | 1 cut(s) | 525 |
| BpuEI | CTTGAG | 2 cut(s) | 97, 169 |
| BpuMI | CCSGG | 1 cut(s) | 844 |
| Bsa29I | ATCGAT | 1 cut(s) | 633 |
| BsaAI | YACGTR | 1 cut(s) | 1129 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1085 |
| BsaHI | GRCGYC | 2 cut(s) | 961, 1021 |
| BsaJI | CCNNGG | 2 cut(s) | 619, 842 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 596, 625, 1100, 1144 |
| Bse1I | ACTGG | 1 cut(s) | 497 |
| Bse3DI | GCAATG | 1 cut(s) | 670 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1085 |
| BseBI | CCWGG | 1 cut(s) | 389 |
| BseCI | ATCGAT | 1 cut(s) | 633 |
| BseDI | CCNNGG | 2 cut(s) | 619, 842 |
| BseGI | GGATG | 1 cut(s) | 953 |
| BseJI | GATNNNNATC | 1 cut(s) | 1085 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 596, 625, 1100, 1144 |
| BseMI | GCAATG | 1 cut(s) | 670 |
| BseMII | CTCAG | 3 cut(s) | 72, 144, 257 |
| BseNI | ACTGG | 1 cut(s) | 497 |
| BseRI | GAGGAG | 1 cut(s) | 283 |
| BshFI | GGCC | 2 cut(s) | 584, 1005 |
| BshVI | ATCGAT | 1 cut(s) | 633 |
| BsiSI | CCGG | 2 cut(s) | 420, 844 |
| BslFI | GGGAC | 1 cut(s) | 948 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 596, 625, 1100, 1144 |
| BsmAI | GTCTC | 1 cut(s) | 709 |
| BsmFI | GGGAC | 1 cut(s) | 948 |
| BsnI | GGCC | 2 cut(s) | 584, 1005 |
| Bsp143I | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| Bsp19I | CCATGG | 1 cut(s) | 619 |
| BspACI | CCGC | 2 cut(s) | 585, 780 |
| BspANI | GGCC | 2 cut(s) | 584, 1005 |
| BspCNI | CTCAG | 3 cut(s) | 73, 145, 258 |
| BspDI | ATCGAT | 1 cut(s) | 633 |
| BspLI | GGNNCC | 1 cut(s) | 494 |
| BspMI | ACCTGC | 1 cut(s) | 385 |
| BspPI | GGATC | 4 cut(s) | 111, 399, 430, 790 |
| BsrDI | GCAATG | 1 cut(s) | 670 |
| BsrI | ACTGG | 1 cut(s) | 497 |
| BssECI | CCNNGG | 2 cut(s) | 619, 842 |
| BssMI | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| BssNAI | GTATAC | 1 cut(s) | 284 |
| BssNI | GRCGYC | 2 cut(s) | 961, 1021 |
| BssT1I | CCWWGG | 1 cut(s) | 619 |
| Bst1107I | GTATAC | 1 cut(s) | 284 |
| Bst2UI | CCWGG | 1 cut(s) | 389 |
| Bst4CI | ACNGT | 5 cut(s) | 299, 747, 931, 956, 1109 |
| BstACI | GRCGYC | 2 cut(s) | 961, 1021 |
| BstBAI | YACGTR | 1 cut(s) | 1129 |
| BstDEI | CTNAG | 5 cut(s) | 81, 153, 266, 278, 525 |
| BstDSI | CCRYGG | 1 cut(s) | 619 |
| BstF5I | GGATG | 1 cut(s) | 953 |
| BstKTI | GATC | 7 cut(s) | 94, 119, 166, 394, 425, 785, 886 |
| BstMAI | GTCTC | 1 cut(s) | 709 |
| BstMBI | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 777 |
| BstNI | CCWGG | 1 cut(s) | 389 |
| BstSCI | CCNGG | 2 cut(s) | 387, 842 |
| BstV2I | GAAGAC | 2 cut(s) | 679, 682 |
| BstX2I | RGATCY | 4 cut(s) | 91, 116, 163, 422 |
| BstYI | RGATCY | 4 cut(s) | 91, 116, 163, 422 |
| BstZ17I | GTATAC | 1 cut(s) | 284 |
| Bsu15I | ATCGAT | 1 cut(s) | 633 |
| BsuRI | GGCC | 2 cut(s) | 584, 1005 |
| BsuTUI | ATCGAT | 1 cut(s) | 633 |
| BtgI | CCRYGG | 1 cut(s) | 619 |
| BtsCI | GGATG | 1 cut(s) | 953 |
| BveI | ACCTGC | 1 cut(s) | 385 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1034 |
| ClaI | ATCGAT | 1 cut(s) | 633 |
| CseI | GACGC | 1 cut(s) | 1010 |
| Csp6I | GTAC | 4 cut(s) | 65, 137, 952, 1008 |
| CviAII | CATG | 5 cut(s) | 620, 625, 711, 719, 795 |
| CviJI | RGCY | 7 cut(s) | 80, 152, 529, 584, 906, 1005, 1137 |
| CviKI_1 | RGCY | 7 cut(s) | 80, 152, 529, 584, 906, 1005, 1137 |
| CviQI | GTAC | 4 cut(s) | 65, 137, 952, 1008 |
| DdeI | CTNAG | 5 cut(s) | 81, 153, 266, 278, 525 |
| DpnI | GATC | 7 cut(s) | 93, 118, 165, 393, 424, 784, 885 |
| DpnII | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 347 |
| DriI | GACNNNNNGTC | 1 cut(s) | 194 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 347 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 194 |
| Eco130I | CCWWGG | 1 cut(s) | 619 |
| Eco32I | GATATC | 1 cut(s) | 631 |
| EcoRII | CCWGG | 1 cut(s) | 387 |
| EcoRV | GATATC | 1 cut(s) | 631 |
| EcoT14I | CCWWGG | 1 cut(s) | 619 |
| ErhI | CCWWGG | 1 cut(s) | 619 |
| FaeI | CATG | 5 cut(s) | 623, 628, 714, 722, 798 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 518, 550 |
| FaqI | GGGAC | 1 cut(s) | 948 |
| FatI | CATG | 5 cut(s) | 619, 624, 710, 718, 794 |
| FbaI | TGATCA | 1 cut(s) | 883 |
| FblI | GTMKAC | 4 cut(s) | 283, 310, 351, 828 |
| Fnu4HI | GCNGC | 1 cut(s) | 585 |
| FokI | GGATG | 1 cut(s) | 960 |
| Fsp4HI | GCNGC | 1 cut(s) | 585 |
| FspBI | CTAG | 3 cut(s) | 876, 903, 1139 |
| GluI | GCNGC | 1 cut(s) | 585 |
| HaeIII | GGCC | 2 cut(s) | 584, 1005 |
| HapII | CCGG | 2 cut(s) | 420, 844 |
| HgaI | GACGC | 1 cut(s) | 1010 |
| Hin1I | GRCGYC | 2 cut(s) | 961, 1021 |
| Hin1II | CATG | 5 cut(s) | 623, 628, 714, 722, 798 |
| HincII | GTYRAC | 3 cut(s) | 352, 829, 864 |
| HindII | GTYRAC | 3 cut(s) | 352, 829, 864 |
| HinfI | GANTC | 4 cut(s) | 157, 371, 606, 872 |
| HpaI | GTTAAC | 1 cut(s) | 864 |
| HpaII | CCGG | 2 cut(s) | 420, 844 |
| HphI | GGTGA | 3 cut(s) | 366, 658, 736 |
| Hpy166II | GTNNAC | 6 cut(s) | 284, 311, 352, 829, 864, 959 |
| Hpy188I | TCNGA | 5 cut(s) | 267, 427, 757, 1036, 1071 |
| Hpy8I | GTNNAC | 6 cut(s) | 284, 311, 352, 829, 864, 959 |
| Hpy99I | CGWCG | 1 cut(s) | 488 |
| HpyAV | CCTTC | 4 cut(s) | 299, 302, 455, 1091 |
| HpyCH4III | ACNGT | 5 cut(s) | 299, 747, 931, 956, 1109 |
| HpyCH4IV | ACGT | 4 cut(s) | 917, 961, 1039, 1128 |
| HpyCH4V | TGCA | 5 cut(s) | 380, 663, 680, 704, 794 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 777 |
| HpyF3I | CTNAG | 5 cut(s) | 81, 153, 266, 278, 525 |
| HpySE526I | ACGT | 4 cut(s) | 917, 961, 1039, 1128 |
| Hsp92I | GRCGYC | 2 cut(s) | 961, 1021 |
| Hsp92II | CATG | 5 cut(s) | 623, 628, 714, 722, 798 |
| Ksp22I | TGATCA | 1 cut(s) | 883 |
| KspAI | GTTAAC | 1 cut(s) | 864 |
| Kzo9I | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| LmnI | GCTCC | 2 cut(s) | 270, 475 |
| LweI | GCATC | 2 cut(s) | 451, 1071 |
| MaeI | CTAG | 3 cut(s) | 876, 903, 1139 |
| MaeII | ACGT | 4 cut(s) | 917, 961, 1039, 1128 |
| MaeIII | GTNAC | 5 cut(s) | 372, 499, 918, 1022, 1103 |
| MalI | GATC | 7 cut(s) | 93, 118, 165, 393, 424, 784, 885 |
| MboI | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| MboII | GAAGA | 4 cut(s) | 101, 443, 682, 684 |
| MflI | RGATCY | 4 cut(s) | 91, 116, 163, 422 |
| MluCI | AATT | 3 cut(s) | 802, 910, 923 |
| MlyI | GAGTC | 1 cut(s) | 380 |
| MmeI | TCCRAC | 1 cut(s) | 144 |
| MnlI | CCTC | 8 cut(s) | 119, 191, 261, 538, 540, 642, 715, 1070 |
| MseI | TTAA | 3 cut(s) | 216, 470, 863 |
| MslI | CAYNNNNRTG | 1 cut(s) | 300 |
| MspI | CCGG | 2 cut(s) | 420, 844 |
| MspR9I | CCNGG | 2 cut(s) | 389, 844 |
| MvaI | CCWGG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 777 |
| NciI | CCSGG | 1 cut(s) | 844 |
| NcoI | CCATGG | 1 cut(s) | 619 |
| NdeII | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| NlaIII | CATG | 5 cut(s) | 623, 628, 714, 722, 798 |
| NlaIV | GGNNCC | 1 cut(s) | 494 |
| NmuCI | GTSAC | 2 cut(s) | 372, 1022 |
| OliI | CACNNNNGTG | 1 cut(s) | 300 |
| PaqCI | CACCTGC | 1 cut(s) | 385 |
| PfeI | GAWTC | 3 cut(s) | 157, 606, 872 |
| PflFI | GACNNNGTC | 1 cut(s) | 1020 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 625, 1100 |
| PfoI | TCCNGGA | 1 cut(s) | 387 |
| PkrI | GCNGC | 1 cut(s) | 586 |
| PleI | GAGTC | 1 cut(s) | 379 |
| PpsI | GAGTC | 1 cut(s) | 379 |
| Ppu21I | YACGTR | 1 cut(s) | 1129 |
| Psp6I | CCWGG | 1 cut(s) | 387 |
| PspGI | CCWGG | 1 cut(s) | 387 |
| PspN4I | GGNNCC | 1 cut(s) | 494 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1034 |
| PsuI | RGATCY | 4 cut(s) | 91, 116, 163, 422 |
| PsyI | GACNNNGTC | 1 cut(s) | 1020 |
| RsaI | GTAC | 4 cut(s) | 66, 138, 953, 1009 |
| RsaNI | GTAC | 4 cut(s) | 65, 137, 952, 1008 |
| RseI | CAYNNNNRTG | 1 cut(s) | 300 |
| SalI | GTCGAC | 2 cut(s) | 350, 827 |
| SaqAI | TTAA | 3 cut(s) | 216, 470, 863 |
| SatI | GCNGC | 1 cut(s) | 585 |
| Sau3AI | GATC | 7 cut(s) | 91, 116, 163, 391, 422, 782, 883 |
| SchI | GAGTC | 1 cut(s) | 380 |
| ScrFI | CCNGG | 2 cut(s) | 389, 844 |
| SfaNI | GCATC | 2 cut(s) | 451, 1071 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 300 |
| SmlI | CTYRAG | 2 cut(s) | 112, 184 |
| SmoI | CTYRAG | 2 cut(s) | 112, 184 |
| Sse9I | AATT | 3 cut(s) | 802, 910, 923 |
| SsiI | CCGC | 2 cut(s) | 585, 780 |
| SspMI | CTAG | 3 cut(s) | 876, 903, 1139 |
| StyD4I | CCNGG | 2 cut(s) | 387, 842 |
| StyI | CCWWGG | 1 cut(s) | 619 |
| TaaI | ACNGT | 5 cut(s) | 299, 747, 931, 956, 1109 |
| TaiI | ACGT | 4 cut(s) | 920, 964, 1042, 1131 |
| TaqI | TCGA | 7 cut(s) | 351, 362, 633, 697, 828, 1062, 1089 |
| TaqII | GACCGA | 1 cut(s) | 1135 |
| TasI | AATT | 3 cut(s) | 802, 910, 923 |
| TauI | GCSGC | 1 cut(s) | 587 |
| TfiI | GAWTC | 3 cut(s) | 157, 606, 872 |
| Tru1I | TTAA | 3 cut(s) | 216, 470, 863 |
| Tru9I | TTAA | 3 cut(s) | 216, 470, 863 |
| TseFI | GTSAC | 2 cut(s) | 372, 1022 |
| Tsp45I | GTSAC | 2 cut(s) | 372, 1022 |
| TspDTI | ATGAA | 3 cut(s) | 102, 437, 598 |
| TspGWI | ACGGA | 2 cut(s) | 488, 960 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1020 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 625, 1100 |
| XbaI | TCTAGA | 1 cut(s) | 875 |
| XmiI | GTMKAC | 4 cut(s) | 283, 310, 351, 828 |
| XspI | CTAG | 3 cut(s) | 876, 903, 1139 |
| ZraI | GACGTC | 1 cut(s) | 962 |