Rh1AG026600

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000369
Physical Location & Seq
Forward (+)
4855410 .. 4857217
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG026600.1

Sequence Viewer

Length: 1107 bp
ATGGGAACCAAAAGAAGCTGCCCCTCTTTGGGTGAAGATCTCATAGTAGAAATTCTGTCCAGATTACCTTTGAAGTCTCTGATGAGGTTTAGCTGCGTGTCAAAAGAGTGGTATTCTCTCACCAGAAACTCTTACTTGATCAATATTCACCTTCGTCGCGCCAATTCGAATCTCTCTCTTCTCACTCATGAATATGATCGTGATAAGCGGTTCAATACTGATCCAAAGTTTGGAATCTCAATGCTTGGAGATGAAGCAGCAGACCTTGTGAGTATAGATTTACCTATCTTGTCGAACTCTTTCAAGTTTACAAACATTTTAGGATCTAGTAATGGCTTAGTATGTCTTGTAGCTAGGGTGAAAAAGAAAACACGAAAGTTTATGGATAGTGCAGAAATAATAATATGGAACCCAGCAACAAAACAGTTTCGAAGTCTTCCTAAACCTGTACTTGAGGAAAATTTCCATCGTTTTGATCGTCCTACTCTTGGTTTTGGATTTAGTGATGATAACACCGATGATTACAAATTAGTTAATATTTTCCATAAGCAAGTACAAGTCTTCACCCGAAGTACAAATTCTTGGAGAGAAGTCGAAGGCAAAGGGTATCCATCATGTAAATATTGTTATGGAGATTTTTGGGTTTCGTTGAAGGGAGTGCTGTATTGGTCGGCAAGGACCGATAGATCCAAGGGCGGTTTTGTTTTGTCTTTCAATCTGCGTGATGAGGTATTTCATGTCATACAATTACCATTCGGGAATGATTGGTACTCTCGACTGCTTCTGTGGAAAAACTCACTAGCAATCGTGAGCAAGAATCAGGTTTGGATGGCGAAGACCGATGACTCTGATGAGAGTGGTGACAATAACAAAATCGTTTGGACCAAACAATTTAGCATTGATTTTTCAATATCACGATGTGAAGAGATCTTTGGAATTTGGAAGGATCAAGTACTAATTCGGAGACATATCTCAAGATATGACAGGCTTTATTTGTATGACCCTATAACCAAGGAAAGGGGAAAGTTGCTTCAGAAACCTGAAGAAAAGAACTATTATGGTTATGGTCAACTAGTCAATTATGTGGAGAGCCTAGCTTTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

368

Amino Acids

42.89

Weight (kDa)

9.15

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 46 8.3e-10 F-box domain
F-box-like PF12937 12 - 46 1.9e-06 F-box-like
FBA_3 PF08268 98 - 273 1.1e-20 F-box associated beta propeller domain
FBA_1 PF07734 129 - 366 1.5e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AccII CGCG 1 cut(s) 159
AciI CCGC 2 cut(s) 208, 696
AclWI GGATC 4 cut(s) 215, 331, 681, 954
AcsI RAATTY 4 cut(s) 51, 460, 577, 936
AcuI CTGAAG 2 cut(s) 1016, 1062
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 5 cut(s) 450, 555, 574, 770, 954
AfiI CCNNNNNNNGG 5 cut(s) 28, 29, 230, 488, 1017
AgsI TTSAA 6 cut(s) 73, 214, 304, 652, 715, 909
AhlI ACTAGT 1 cut(s) 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 915, 947
AluBI AGCT 4 cut(s) 18, 93, 353, 1097
AluI AGCT 4 cut(s) 18, 93, 353, 1097
Alw26I GTCTC 2 cut(s) 81, 958
AlwI GGATC 4 cut(s) 215, 331, 681, 954
ApeKI GCWGC 3 cut(s) 18, 93, 257
ApoI RAATTY 4 cut(s) 51, 460, 577, 936
Asp700I GAANNNNTTC 1 cut(s) 299
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 678, 882
AsuHPI GGTGA 6 cut(s) 44, 112, 140, 370, 556, 872
AsuII TTCGAA 2 cut(s) 167, 430
AvaII GGWCC 2 cut(s) 678, 882
BbsI GAAGAC 3 cut(s) 428, 553, 842
BbvI GCAGC 3 cut(s) 5, 80, 269
BccI CCATC 3 cut(s) 474, 619, 823
BciVI GTATCC 1 cut(s) 618
BclI TGATCA 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 81, 958
BcuI ACTAGT 1 cut(s) 1072
BfaI CTAG 5 cut(s) 327, 354, 800, 1073, 1094
BfuI GTATCC 1 cut(s) 618
BglII AGATCT 2 cut(s) 37, 927
BisI GCNGC 3 cut(s) 19, 94, 258
BlsI GCNGC 3 cut(s) 20, 95, 259
BmcAI AGTACT 1 cut(s) 954
Bme18I GGWCC 2 cut(s) 678, 882
BmgT120I GGNCC 2 cut(s) 678, 882
BmiI GGNNCC 2 cut(s) 7, 410
BpiI GAAGAC 3 cut(s) 428, 553, 842
Bpu14I TTCGAA 2 cut(s) 167, 430
BpuEI CTTGAG 2 cut(s) 473, 958
BsaJI CCNNGG 2 cut(s) 690, 1011
Bsc4I CCNNNNNNNGG 5 cut(s) 28, 29, 230, 488, 1017
BseDI CCNNGG 2 cut(s) 690, 1011
BseGI GGATG 1 cut(s) 834
BseLI CCNNNNNNNGG 5 cut(s) 28, 29, 230, 488, 1017
BseXI GCAGC 3 cut(s) 5, 80, 269
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 411
Bsh1236I CGCG 1 cut(s) 159
BslI CCNNNNNNNGG 5 cut(s) 28, 29, 230, 488, 1017
BsmAI GTCTC 2 cut(s) 81, 958
Bsp119I TTCGAA 2 cut(s) 167, 430
Bsp143I GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
BspACI CCGC 2 cut(s) 208, 696
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 7, 410
BspPI GGATC 4 cut(s) 215, 331, 681, 954
BspT104I TTCGAA 2 cut(s) 167, 430
BssECI CCNNGG 2 cut(s) 690, 1011
BssMI GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
BssT1I CCWWGG 2 cut(s) 690, 1011
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 2 cut(s) 183, 918
BstBI TTCGAA 2 cut(s) 167, 430
BstDEI CTNAG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 834
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 9 cut(s) 40, 141, 199, 223, 326, 478, 689, 930, 949
BstMAI GTCTC 2 cut(s) 81, 958
BstMBI GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 5, 80, 269
BstV2I GAAGAC 3 cut(s) 428, 553, 842
BstX2I RGATCY 4 cut(s) 37, 323, 686, 927
BstYI RGATCY 4 cut(s) 37, 323, 686, 927
BsuI GTATCC 1 cut(s) 618
BtsCI GGATG 1 cut(s) 834
CciI TCATGA 1 cut(s) 187
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 678, 882
Csp6I GTAC 5 cut(s) 449, 554, 573, 769, 953
CviAII CATG 3 cut(s) 188, 615, 737
CviJI RGCY 7 cut(s) 18, 93, 336, 353, 988, 1092, 1097
CviKI_1 RGCY 7 cut(s) 18, 93, 336, 353, 988, 1092, 1097
CviQI GTAC 5 cut(s) 449, 554, 573, 769, 953
DdeI CTNAG 1 cut(s) 337
DpnI GATC 9 cut(s) 39, 140, 198, 222, 325, 477, 688, 929, 948
DpnII GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
DraIII CACNNNGTG 1 cut(s) 920
Eam1104I CTCTTC 2 cut(s) 183, 918
EarI CTCTTC 2 cut(s) 183, 918
Eco130I CCWWGG 2 cut(s) 690, 1011
Eco47I GGWCC 2 cut(s) 678, 882
Eco57I CTGAAG 2 cut(s) 1016, 1062
EcoT14I CCWWGG 2 cut(s) 690, 1011
ErhI CCWWGG 2 cut(s) 690, 1011
FaeI CATG 3 cut(s) 191, 618, 740
FatI CATG 3 cut(s) 187, 614, 736
FbaI TGATCA 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 19, 94, 258
FokI GGATG 1 cut(s) 841
Fsp4HI GCNGC 3 cut(s) 19, 94, 258
FspBI CTAG 5 cut(s) 327, 354, 800, 1073, 1094
GlaI GCGC 1 cut(s) 160
GluI GCNGC 3 cut(s) 19, 94, 258
GsaI CCCAGC 1 cut(s) 416
HhaI GCGC 1 cut(s) 161
Hin1II CATG 3 cut(s) 191, 618, 740
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 1070
HindII GTYRAC 1 cut(s) 1070
HinfI GANTC 4 cut(s) 169, 234, 817, 845
HphI GGTGA 6 cut(s) 44, 112, 140, 370, 556, 872
Hpy166II GTNNAC 2 cut(s) 309, 1070
Hpy188I TCNGA 4 cut(s) 81, 850, 963, 1035
Hpy188III TCNNGA 8 cut(s) 60, 188, 200, 757, 774, 808, 915, 975
Hpy8I GTNNAC 2 cut(s) 309, 1070
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 4 cut(s) 161, 590, 646, 937
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 392
HpyF3I CTNAG 1 cut(s) 337
Hsp92II CATG 3 cut(s) 191, 618, 740
HspAI GCGC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 138
Kzo9I GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
LpnPI CCDG 7 cut(s) 73, 136, 426, 459, 806, 970, 1053
Lsp1109I GCAGC 3 cut(s) 5, 80, 269
MaeI CTAG 5 cut(s) 327, 354, 800, 1073, 1094
MaeIII GTNAC 1 cut(s) 860
MalI GATC 9 cut(s) 39, 140, 198, 222, 325, 477, 688, 929, 948
MboI GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
MboII GAAGA 7 cut(s) 47, 170, 428, 553, 847, 935, 1055
MflI RGATCY 4 cut(s) 37, 323, 686, 927
MlyI GAGTC 1 cut(s) 839
MnlI CCTC 4 cut(s) 34, 78, 448, 721
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 1 cut(s) 534
MslI CAYNNNNRTG 1 cut(s) 192
MvnI CGCG 1 cut(s) 159
NdeII GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
NlaIII CATG 3 cut(s) 191, 618, 740
NlaIV GGNNCC 2 cut(s) 7, 410
NmuCI GTSAC 1 cut(s) 860
NspV TTCGAA 2 cut(s) 167, 430
PagI TCATGA 1 cut(s) 187
PcsI WCGNNNNNNNCGW 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 299
PfeI GAWTC 3 cut(s) 169, 234, 817
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 3 cut(s) 20, 95, 259
PleI GAGTC 1 cut(s) 839
PpsI GAGTC 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 412
PspN4I GGNNCC 2 cut(s) 7, 410
PspPI GGNCC 2 cut(s) 678, 882
PsuI RGATCY 4 cut(s) 37, 323, 686, 927
RsaI GTAC 5 cut(s) 450, 555, 574, 770, 954
RsaNI GTAC 5 cut(s) 449, 554, 573, 769, 953
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 1 cut(s) 534
SatI GCNGC 3 cut(s) 19, 94, 258
Sau3AI GATC 9 cut(s) 37, 138, 196, 220, 323, 475, 686, 927, 946
Sau96I GGNCC 2 cut(s) 678, 882
ScaI AGTACT 1 cut(s) 954
SchI GAGTC 1 cut(s) 839
SfuI TTCGAA 2 cut(s) 167, 430
SinI GGWCC 2 cut(s) 678, 882
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 452, 973
SmoI CTYRAG 2 cut(s) 452, 973
SpeI ACTAGT 1 cut(s) 1072
SsiI CCGC 2 cut(s) 208, 696
SspI AATATT 3 cut(s) 145, 538, 623
SspMI CTAG 5 cut(s) 327, 354, 800, 1073, 1094
StyI CCWWGG 2 cut(s) 690, 1011
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 5 cut(s) 167, 293, 430, 594, 775
TaqII GACCGA 2 cut(s) 695, 854
TatI WGTACW 4 cut(s) 448, 553, 572, 952
TfiI GAWTC 3 cut(s) 169, 234, 817
Tru1I TTAA 1 cut(s) 534
Tru9I TTAA 1 cut(s) 534
TseFI GTSAC 1 cut(s) 860
TseI GCWGC 3 cut(s) 18, 93, 257
Tsp45I GTSAC 1 cut(s) 860
TspDTI ATGAA 3 cut(s) 204, 267, 725
Van91I CCANNNNNTGG 1 cut(s) 230
VpaK11BI GGWCC 2 cut(s) 678, 882
XapI RAATTY 4 cut(s) 51, 460, 577, 936
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 5 cut(s) 327, 354, 800, 1073, 1094
ZrmI AGTACT 1 cut(s) 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.