RLG00000021119

F-Box protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
72123657 .. 72124988
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021119

Sequence Viewer

Length: 1332 bp
ATGGAAACTAGTAGAAGCCAAGTTGTAAAGCTGAGCTATACTTTGGCTCTAGGAATACCTGAAAATGTCCTAGTTGAAATTCTCTCAAAACTGCCTGTCAAGTCTTTACTTAGGTTTCGCTGCGTCTCGCAAGAGTGGCATGCCCTCACCAAAAGTTCTTACTTCATTGCCAGACACCTTGTTCATCATTCTAGCTGCTCCGATCAGAGTCATCCCTGTCTTCTCCTTCTCTCGAGCCTAGCTGGAAGCTTTGAAGATGATTGCAAGCCACGACTCGGATTCTCGTTGCTTCGTGATGAAGAAATAACGTTTTTGGGATTACCTTCCCTGCCGAACCTTACAATCAAAACAGCGGCCCTAAAGCTCGTGGGATCTAGTAATGGCCTAGTTTTTTGTCATGTCATTGACACTGAGAATTGGACTAGAACTACAGAAGAGAAGCATGATGTTGCTTCTAGATTTAGAGAATTATTTTTAGTATGGAACCCAGCAACACAACAATTTAGGTGTCTTCCGGAACCTAAAAATAGTATTTCTTTGGAGCAAGAGGAGGAGGCTACTTCTGTTCTTTTCGCTTTTGATTGTGTACATGATCATGACATTAGTGAATACAAATTGGTGAGAGTTTTTTCTCATGGGAGTGATGATCCCACAGATCATGGGAAAGAGGTTACTACTTTTGAAGCTCAAGTTTTCATCCGAAGTACAAATTCTTGGAGGCAAGTCAAGGACAAATTAGCGTTTCCATCATATAAAAGTTGTTTTGAATCAACTGCAACTACATTGAATGGAGTGCTGTATTGGAAGGTAGTGCAAAAATCCGATGAGTGCTACGTTCTGTCATTCAGTTTACATGAAGAGGTTTTCAGCATTATACAGCTACCAATATGTATACGTTACCTTAATCGTGACGATTATAACTGGACCACAGTACCTTTATATTCATGGAAAGATTCACCTGCAATTGTAGTAACCGATTATTCAGCCAATGACAATCCCAACATAGTGTTTTGGGTGATGAGTACCAATGAAGAATCAAAGAGTAATACTAATGAGAGTGGTACACAAATGCGAACACCAACTTGGGTTCAACAAGTAAGACTCAAATACTCAGTGCTAGATGGATTTAGCATGATAGGACTTTGGAAGGATCAATTTCTTTTCACATCCAAGAAAACAAATGAAGCTGCTGGTGCCACAGATGATATTGAGCCCGAAGACCTGTTTCTGTACGACCCCAGAAGTGATACCAAGAGAGAGATTGTGAAACATGCAGTAAGGATCAAGTTTATACAAGTAGAAAATTATGTGGAGAGCCTACTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

50.71

Weight (kDa)

5.52

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 55 3.4e-09 F-box domain
F-box-like PF12937 19 - 55 7e-07 F-box-like
FBA_3 PF08268 148 - 346 8.8e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
AarI CACCTGC 1 cut(s) 967
Acc36I ACCTGC 1 cut(s) 967
AccB1I GGYRCC 1 cut(s) 1193
AccI GTMKAC 1 cut(s) 892
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 1 cut(s) 353
AclI AACGTT 1 cut(s) 308
AclWI GGATC 4 cut(s) 379, 641, 1158, 1289
AcsI RAATTY 2 cut(s) 78, 709
AfaI GTAC 6 cut(s) 588, 706, 933, 1024, 1063, 1232
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 6 cut(s) 77, 254, 683, 767, 787, 1091
AhlI ACTAGT 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 1066, 1098
AluBI AGCT 9 cut(s) 31, 36, 195, 242, 249, 364, 686, 880, 1187
AluI AGCT 9 cut(s) 31, 36, 195, 242, 249, 364, 686, 880, 1187
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 4 cut(s) 379, 641, 1158, 1289
Ama87I CYCGRG 1 cut(s) 232
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 2 cut(s) 354, 382
ApeKI GCWGC 3 cut(s) 120, 195, 1187
ApoI RAATTY 2 cut(s) 78, 709
AspS9I GGNCC 2 cut(s) 355, 924
AsuHPI GGTGA 4 cut(s) 139, 631, 948, 1027
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 924
BaeI ACNNNNGTAYC 2 cut(s) 915, 948
BanI GGYRCC 1 cut(s) 1193
BanII GRGCYC 1 cut(s) 1215
BauI CACGAG 1 cut(s) 365
BbsI GAAGAC 3 cut(s) 212, 503, 1224
BbvI GCAGC 3 cut(s) 107, 182, 1174
BccI CCATC 2 cut(s) 754, 1115
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 8
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 967
BisI GCNGC 4 cut(s) 121, 196, 354, 1188
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 4 cut(s) 122, 197, 355, 1189
Bme18I GGWCC 1 cut(s) 924
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 355, 924
BmiI GGNNCC 3 cut(s) 485, 519, 1195
BpiI GAAGAC 3 cut(s) 212, 503, 1224
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 514
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 926, 1325
Bse3DI GCAATG 1 cut(s) 165
BseAI TCCGGA 1 cut(s) 514
BseGI GGATG 3 cut(s) 211, 696, 1166
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 3 cut(s) 23, 402, 1125
BseNI ACTGG 2 cut(s) 926, 1325
BseRI GAGGAG 2 cut(s) 563, 566
BseXI GCAGC 3 cut(s) 107, 182, 1174
BseYI CCCAGC 1 cut(s) 487
BshFI GGCC 2 cut(s) 356, 384
BshNI GGYRCC 1 cut(s) 1193
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 1 cut(s) 515
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsnI GGCC 2 cut(s) 356, 384
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 1 cut(s) 1215
Bsp13I TCCGGA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 353
BspANI GGCC 2 cut(s) 356, 384
BspCNI CTCAG 3 cut(s) 24, 403, 1124
BspEI TCCGGA 1 cut(s) 514
BspHI TCATGA 1 cut(s) 595
BspLI GGNNCC 3 cut(s) 485, 519, 1195
BspMI ACCTGC 1 cut(s) 967
BspPI GGATC 4 cut(s) 379, 641, 1158, 1289
BspT107I GGYRCC 1 cut(s) 1193
BsrDI GCAATG 1 cut(s) 165
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 2 cut(s) 926, 1325
BssMI GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
BssNAI GTATAC 1 cut(s) 893
BssSI CACGAG 1 cut(s) 365
Bst1107I GTATAC 1 cut(s) 893
Bst2BI CACGAG 1 cut(s) 365
Bst4CI ACNGT 1 cut(s) 931
Bst6I CTCTTC 2 cut(s) 429, 852
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 2 cut(s) 141, 266
BstDEI CTNAG 4 cut(s) 32, 110, 411, 1111
BstF5I GGATG 3 cut(s) 211, 696, 1166
BstKTI GATC 7 cut(s) 205, 374, 595, 649, 658, 1153, 1284
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
BstMWI GCNNNNNNNGC 2 cut(s) 136, 1193
BstNSI RCATGY 2 cut(s) 143, 1274
BstSFI CTRYAG 1 cut(s) 429
BstV1I GCAGC 3 cut(s) 107, 182, 1174
BstV2I GAAGAC 3 cut(s) 212, 503, 1224
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BstZ17I GTATAC 1 cut(s) 893
BsuRI GGCC 2 cut(s) 356, 384
BtsCI GGATG 3 cut(s) 211, 696, 1166
BtsIMutI CAGTG 2 cut(s) 408, 1119
BveI ACCTGC 1 cut(s) 967
Cac8I GCNNGC 2 cut(s) 141, 266
CciI TCATGA 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 355, 924
CseI GACGC 1 cut(s) 112
Csp6I GTAC 6 cut(s) 587, 705, 932, 1023, 1062, 1231
CviQI GTAC 6 cut(s) 587, 705, 932, 1023, 1062, 1231
DdeI CTNAG 4 cut(s) 32, 110, 411, 1111
DpnI GATC 7 cut(s) 204, 373, 594, 648, 657, 1152, 1283
DpnII GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
Eam1104I CTCTTC 2 cut(s) 429, 852
EarI CTCTTC 2 cut(s) 429, 852
Eco24I GRGCYC 1 cut(s) 1215
Eco47I GGWCC 1 cut(s) 924
Eco88I CYCGRG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 1215
Esp3I CGTCTC 1 cut(s) 130
FbaI TGATCA 1 cut(s) 592
FblI GTMKAC 1 cut(s) 892
Fnu4HI GCNGC 4 cut(s) 121, 196, 354, 1188
FokI GGATG 3 cut(s) 198, 683, 1153
FriOI GRGCYC 1 cut(s) 1215
Fsp4HI GCNGC 4 cut(s) 121, 196, 354, 1188
GluI GCNGC 4 cut(s) 121, 196, 354, 1188
GsaI CCCAGC 1 cut(s) 491
HaeIII GGCC 2 cut(s) 356, 384
HapII CCGG 1 cut(s) 515
HgaI GACGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 7 cut(s) 208, 273, 279, 767, 953, 1034, 1101
HpaII CCGG 1 cut(s) 515
HphI GGTGA 4 cut(s) 139, 631, 948, 1027
Hpy166II GTNNAC 4 cut(s) 587, 851, 893, 1064
Hpy188I TCNGA 5 cut(s) 202, 207, 278, 701, 823
Hpy188III TCNNGA 6 cut(s) 232, 293, 456, 515, 596, 908
Hpy8I GTNNAC 4 cut(s) 587, 851, 893, 1064
HpyAV CCTTC 4 cut(s) 236, 333, 799, 1141
HpyCH4III ACNGT 1 cut(s) 931
HpyCH4IV ACGT 3 cut(s) 308, 834, 895
HpyCH4V TGCA 5 cut(s) 264, 776, 814, 962, 1274
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 1193
HpyF3I CTNAG 4 cut(s) 32, 110, 411, 1111
HpySE526I ACGT 3 cut(s) 308, 834, 895
Kpn2I TCCGGA 1 cut(s) 514
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
LmnI GCTCC 2 cut(s) 203, 541
Lsp1109I GCAGC 3 cut(s) 107, 182, 1174
MaeII ACGT 3 cut(s) 308, 834, 895
MaeIII GTNAC 4 cut(s) 670, 896, 908, 970
MalI GATC 7 cut(s) 204, 373, 594, 648, 657, 1152, 1283
MboI GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
MboII GAAGA 8 cut(s) 212, 266, 311, 446, 503, 869, 1043, 1229
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 1215
MlyI GAGTC 3 cut(s) 217, 267, 1095
MnlI CCTC 7 cut(s) 155, 541, 544, 547, 661, 711, 853
MroI TCCGGA 1 cut(s) 514
MseI TTAA 1 cut(s) 903
MslI CAYNNNNRTG 2 cut(s) 594, 639
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 1 cut(s) 515
MunI CAATTG 1 cut(s) 963
MwoI GCNNNNNNNGC 2 cut(s) 136, 1193
NdeII GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
NlaIV GGNNCC 3 cut(s) 485, 519, 1195
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 2 cut(s) 143, 1274
PaeI GCATGC 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 232
PagI TCATGA 1 cut(s) 595
PaqCI CACCTGC 1 cut(s) 967
PfeI GAWTC 4 cut(s) 279, 767, 953, 1034
PkrI GCNGC 4 cut(s) 122, 197, 355, 1189
PleI GAGTC 3 cut(s) 216, 267, 1095
PpsI GAGTC 3 cut(s) 216, 267, 1095
PsiI TTATAA 1 cut(s) 918
Psp1406I AACGTT 1 cut(s) 308
PspFI CCCAGC 1 cut(s) 487
PspN4I GGNNCC 3 cut(s) 485, 519, 1195
PspPI GGNCC 2 cut(s) 355, 924
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 6 cut(s) 588, 706, 933, 1024, 1063, 1232
RsaNI GTAC 6 cut(s) 587, 705, 932, 1023, 1062, 1231
RseI CAYNNNNRTG 2 cut(s) 594, 639
SaqAI TTAA 1 cut(s) 903
SatI GCNGC 4 cut(s) 121, 196, 354, 1188
Sau3AI GATC 7 cut(s) 202, 371, 592, 646, 655, 1150, 1281
Sau96I GGNCC 2 cut(s) 355, 924
SchI GAGTC 3 cut(s) 217, 267, 1095
SduI GDGCHC 1 cut(s) 1215
SfcI CTRYAG 1 cut(s) 429
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 924
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 594, 639
SmlI CTYRAG 2 cut(s) 232, 687
SmoI CTYRAG 2 cut(s) 232, 687
SpeI ACTAGT 1 cut(s) 8
SphI GCATGC 1 cut(s) 143
SsiI CCGC 1 cut(s) 353
TaaI ACNGT 1 cut(s) 931
TaiI ACGT 3 cut(s) 311, 837, 898
TaqI TCGA 1 cut(s) 233
TatI WGTACW 2 cut(s) 586, 704
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 4 cut(s) 279, 767, 953, 1034
Tru1I TTAA 1 cut(s) 903
Tru9I TTAA 1 cut(s) 903
TscAI CASTG 2 cut(s) 415, 1119
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 3 cut(s) 120, 195, 1187
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 8 cut(s) 154, 173, 312, 685, 870, 933, 1044, 1197
TspRI CASTG 2 cut(s) 415, 1119
VpaK11BI GGWCC 1 cut(s) 924
XapI RAATTY 2 cut(s) 78, 709
XbaI TCTAGA 1 cut(s) 455
XceI RCATGY 2 cut(s) 143, 1274
XhoI CTCGAG 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.