FvH4_1g12960

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000369
Physical Location & Seq
Reverse (-)
7155364 .. 7156550
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12960.t1

Sequence Viewer

Length: 450 bp
ATGGGGTGCTGTATTCGCCTCTGTGGACACAGGAACAAAGATACGCATGTCTTGTCGTTCAATTTGGGCGACGAGGTCTTCCATGTGATACCATTACCAGAGATAATTAGTCCAAGAACTGCACTCTTCTCATGGAAAAAATCCTTGGCCTTTCTAGGAGGTGAACACGAATTACCTCGTGAGCTTTGGATTATGACTGAGGTGCCTTCTGCTAGTACTACACAAATGCCTTGGGTTAAACAGTTTATACTTAAACCGTCATCACTGCCGAAATATATATTAGGATCTTGGAAGGAGGACCATCTTTTGGGGAAAGACAACTGTGGAGACCTACATTGTTACGATCCTGCGTGCCAGAAATCAACAAAGCTTGCACAACATGATCAAACAGACAGTTACAGTTATTACAAAGCAATCAATTATGTGGAGAGCCTAGTTTCAGTAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

150

Amino Acids

16.96

Weight (kDa)

6.36

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 202
AccB7I CCANNNNNTGG 1 cut(s) 307
AccI GTMKAC 1 cut(s) 444
AclWI GGATC 2 cut(s) 292, 338
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
AluBI AGCT 2 cut(s) 184, 370
AluI AGCT 2 cut(s) 184, 370
Alw26I GTCTC 1 cut(s) 321
AlwI GGATC 2 cut(s) 292, 338
AoxI GGCC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 298
BaeI ACNNNNGTAYC 2 cut(s) 33, 66
BanI GGYRCC 1 cut(s) 202
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 70
BccI CCATC 1 cut(s) 309
BclI TGATCA 1 cut(s) 382
BcoDI GTCTC 1 cut(s) 321
BfaI CTAG 3 cut(s) 155, 213, 434
BmcAI AGTACT 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 70
BsaI GGTCTC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 144, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseDI CCNNGG 2 cut(s) 144, 230
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 189
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 307
BsmAI GTCTC 1 cut(s) 321
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 284, 343, 382
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 292, 338
BspT107I GGYRCC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 144, 230
BssMI GATC 3 cut(s) 284, 343, 382
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 2 cut(s) 144, 230
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 5 cut(s) 243, 258, 323, 395, 401
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 352, 372
BstDEI CTNAG 1 cut(s) 198
BstKTI GATC 3 cut(s) 287, 346, 385
BstMAI GTCTC 1 cut(s) 321
BstMBI GATC 3 cut(s) 284, 343, 382
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 284
BstYI RGATCY 1 cut(s) 284
BsuRI GGCC 1 cut(s) 149
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 263
Cac8I GCNNGC 2 cut(s) 352, 372
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 216
CviAII CATG 4 cut(s) 47, 83, 132, 380
CviJI RGCY 4 cut(s) 149, 184, 370, 432
CviKI_1 RGCY 4 cut(s) 149, 184, 370, 432
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 286, 345, 384
DpnII GATC 3 cut(s) 284, 343, 382
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 144, 230
Eco31I GGTCTC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 144, 230
ErhI CCWWGG 2 cut(s) 144, 230
FaeI CATG 4 cut(s) 50, 86, 135, 383
FaiI YATR 9 cut(s) 48, 84, 133, 194, 248, 276, 278, 381, 423
FatI CATG 4 cut(s) 46, 82, 131, 379
FbaI TGATCA 1 cut(s) 382
FblI GTMKAC 1 cut(s) 444
FspBI CTAG 3 cut(s) 155, 213, 434
HaeIII GGCC 1 cut(s) 149
Hin1II CATG 4 cut(s) 50, 86, 135, 383
HindIII AAGCTT 1 cut(s) 368
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 3 cut(s) 26, 164, 445
Hpy188III TCNNGA 1 cut(s) 179
Hpy8I GTNNAC 3 cut(s) 26, 164, 445
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 216, 286
HpyCH4III ACNGT 5 cut(s) 243, 258, 323, 395, 401
HpyCH4V TGCA 2 cut(s) 122, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 4 cut(s) 50, 86, 135, 383
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 3 cut(s) 284, 343, 382
LpnPI CCDG 4 cut(s) 16, 111, 360, 368
MaeI CTAG 3 cut(s) 155, 213, 434
MaeIII GTNAC 2 cut(s) 338, 395
MalI GATC 3 cut(s) 286, 345, 384
MboI GATC 3 cut(s) 284, 343, 382
MboII GAAGA 2 cut(s) 70, 118
MflI RGATCY 1 cut(s) 284
MluCI AATT 4 cut(s) 61, 105, 170, 418
MnlI CCTC 6 cut(s) 29, 67, 152, 186, 193, 289
MseI TTAA 2 cut(s) 237, 252
MwoI GCNNNNNNNGC 1 cut(s) 15
NdeII GATC 3 cut(s) 284, 343, 382
NlaIII CATG 4 cut(s) 50, 86, 135, 383
NlaIV GGNNCC 1 cut(s) 204
NspI RCATGY 1 cut(s) 50
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 1 cut(s) 298
PsrI GAACNNNNNNTAC 2 cut(s) 156, 188
PsuI RGATCY 1 cut(s) 284
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 237, 252
Sau3AI GATC 3 cut(s) 284, 343, 382
Sau96I GGNCC 1 cut(s) 298
ScaI AGTACT 1 cut(s) 217
SetI ASST 7 cut(s) 78, 163, 178, 186, 204, 333, 372
SinI GGWCC 1 cut(s) 298
Sse9I AATT 4 cut(s) 61, 105, 170, 418
SspMI CTAG 3 cut(s) 155, 213, 434
StyI CCWWGG 2 cut(s) 144, 230
TaaI ACNGT 5 cut(s) 243, 258, 323, 395, 401
TasI AATT 4 cut(s) 61, 105, 170, 418
TatI WGTACW 1 cut(s) 215
Tru1I TTAA 2 cut(s) 237, 252
Tru9I TTAA 2 cut(s) 237, 252
TscAI CASTG 1 cut(s) 270
TspRI CASTG 1 cut(s) 270
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 298
XceI RCATGY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 444
XspI CTAG 3 cut(s) 155, 213, 434
ZrmI AGTACT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.