Rh3CG196000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000369
Physical Location & Seq
Reverse (-)
17493677 .. 17493994
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG196000.1

Sequence Viewer

Length: 318 bp
ATGAGTACTGATCAAGAATCAAAGAGGAGTTGTAAGAATGTTGCACAAATACAAAATCCAGCTTGGACTCGACAGTTCAGATTCAAATACTTAGTAATTTCAGAAGCAACGCGCCTCCTGGGAAGTTGGAAAGATCAATTTCTCTTTGCATCCGACAAAAGTGATGAAGTTTTTGATGCGGCAGCTGATAATATTGTGCCTCAAGACCTGTTTTCGTATGACCCTAAAAGCGAGACAAAGAGAAAAATTCTCAAAGATGGAGAGAGGATCAAGTTTTGTGGAGGAGTAAATTATGTGGAGAGCCTAGTTCCAGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.04

Weight (kDa)

7.72

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 275
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 7
AgsI TTSAA 1 cut(s) 85
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 62, 185
AluI AGCT 2 cut(s) 62, 185
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 246
AspLEI GCGC 1 cut(s) 114
BbvI GCAGC 1 cut(s) 194
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 1 cut(s) 10
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 2 cut(s) 305, 316
BisI GCNGC 2 cut(s) 180, 183
BlsI GCNGC 2 cut(s) 181, 184
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 158, 166
BpuEI CTTGAG 1 cut(s) 186
BsaJI CCNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 2 cut(s) 40, 297
BseXI GCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 227
Bsp143I GATC 3 cut(s) 10, 133, 267
BspACI CCGC 1 cut(s) 179
BspFNI CGCG 1 cut(s) 112
BspPI GGATC 1 cut(s) 275
BsrI ACTGG 1 cut(s) 311
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 3 cut(s) 10, 133, 267
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 91
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 112
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 3 cut(s) 13, 136, 270
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 3 cut(s) 10, 133, 267
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 149
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 2 cut(s) 259, 294
CviJI RGCY 3 cut(s) 62, 185, 303
CviKI_1 RGCY 3 cut(s) 62, 185, 303
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 91
DpnI GATC 3 cut(s) 12, 135, 269
DpnII GATC 3 cut(s) 10, 133, 267
EcoRII CCWGG 1 cut(s) 117
FaiI YATR 2 cut(s) 219, 294
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 180, 183
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 180, 183
FspBI CTAG 2 cut(s) 305, 316
GlaI GCGC 1 cut(s) 113
GluI GCNGC 2 cut(s) 180, 183
HhaI GCGC 1 cut(s) 114
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HinfI GANTC 3 cut(s) 17, 67, 81
Hpy188I TCNGA 3 cut(s) 80, 103, 154
Hpy188III TCNNGA 2 cut(s) 14, 203
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 44, 149
HpyF3I CTNAG 1 cut(s) 91
HspAI GCGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 3 cut(s) 10, 133, 267
LpnPI CCDG 4 cut(s) 72, 104, 131, 221
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 158, 166
MaeI CTAG 2 cut(s) 305, 316
MalI GATC 3 cut(s) 12, 135, 269
MboI GATC 3 cut(s) 10, 133, 267
MluCI AATT 4 cut(s) 96, 137, 246, 289
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 2 cut(s) 107, 177
MnlI CCTC 5 cut(s) 18, 125, 210, 258, 275
MspA1I CMGCKG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 112
NdeII GATC 3 cut(s) 10, 133, 267
PfeI GAWTC 2 cut(s) 17, 81
PkrI GCNGC 2 cut(s) 181, 184
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 2 cut(s) 180, 183
Sau3AI GATC 3 cut(s) 10, 133, 267
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 119
SetI ASST 3 cut(s) 64, 187, 210
SfaNI GCATC 2 cut(s) 158, 166
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 4 cut(s) 96, 137, 246, 289
SsiI CCGC 1 cut(s) 179
SspI AATATT 1 cut(s) 193
SspMI CTAG 2 cut(s) 305, 316
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 70
TasI AATT 4 cut(s) 96, 137, 246, 289
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 17, 81
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 180
XapI RAATTY 1 cut(s) 246
XspI CTAG 2 cut(s) 305, 316
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.