FvH4_5g08370

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000369
Physical Location & Seq
Forward (+)
4866600 .. 4867847
1248 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08370.t1

Sequence Viewer

Length: 1206 bp
ATGGAGGCAAGACAAGTATCCTCTTCTTTGGCAGATAATCAAGACCTGGTGATAGAAGTCCTCTCAAGATTACCTATCAAGTCTTTAGTTAGGTTTATGAGTGTGTCGCAAGAATGGTCTGCTCTCATAAAAAGCTCTCGCTTCATTGCCATTCACCAAAAACACCTTCAACGCTTGAATCCCAATCTCTGCTTACTCTATGGTCGCAGCGTCAGACATACATATACTAAACCCCATAAGATTTCACTGCTCGGCAAAGAAGATACACATTTGGTGGCGTTAGACCTGCCTGAACGTGTCCAGCAAGACTCTAATGATAAGTTGATACATATTGCGGGATCAAGCCATGGTCTAGTCTGCCTTCATCCTCTGTACACTTCGAAGAATAATCCTTTGTACACATGGGAGGAGGAAATCGTCGTATGGAACCCAGCAACAAGAAAGCATAGGTGTCTTCCTCCACCCTTGGCTTTTAAGGGTGAGAAGGAGAGTACTGGTGATCGACCACTATTGGGTTTCGTATTCATTAACGACGATGCTGCAGAGTACAAAGTGGTGAGGATTTCCCACAGCATGGATCATGATGCTGATGGAAAGTTTACATACCTAACCCAAGTCTTCACCCGCAGTGAAAACTCATGGAGAGAAGTTAAAAGCTGTGTTCCGCCGGGAGATTATGACTTTGAATCACACTCTTCCATTACTTCGAATGGAGTGTTGTATTGCTTGGCAAGCACCAAGTCAGTTAGGTATGTTTTCTCGTTCAATCTGCAGGATGAGGTAGTCCACAACATGCCAATGCCGCCTCGTTATAGCCATTTCCCCTCTCATGAGTTTTATGGCCATCAGCTCTTTACATGGGAAAATTCGGCTGCATTTTTAACCTATGATGAAGGCCAGTATGTTCTTTGGGTGATGAAGAAGGCATCCGGTACACAAATGCCTACATGGAATTGGACTGCACAGATTACAATCAAGAATCTCATACAGATTCCCGGGGTCGGTAGCCGGCAAGTTGAAGCTTTTCCATTATGGGGGGGAGGGGGTGATTTATATCTGTTTGTCAAGAGGCACGTCAAAGCTGGACAAGATCTGGTTACGTATGATCGAGCGAAAACCAAACCAAGAAAGCTTTTCGAACTTGCGACAGGGAGTATATACCGTCAGGTGGTAGATTACATGCAGAGCTTAGTTTCAGTATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

402

Amino Acids

45.87

Weight (kDa)

8.62

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 48 2.4e-07 F-box domain
Beta-prop_KIB1-4 PF03478 93 - 279 1.6e-06 KIB1-4 beta-propeller
FBA_3 PF08268 104 - 310 3.2e-17 F-box associated beta propeller domain
FBA_1 PF07734 136 - 399 5.2e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000369)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis pycom17g23320
rosa_chinensis RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AccB7I CCANNNNNTGG 1 cut(s) 574
AciI CCGC 4 cut(s) 335, 625, 665, 803
AclWI GGATC 2 cut(s) 346, 585
AcoI YGGCCR 1 cut(s) 841
AcsI RAATTY 1 cut(s) 865
AfaI GTAC 5 cut(s) 374, 398, 493, 548, 934
AfiI CCNNNNNNNGG 5 cut(s) 512, 574, 1001, 1034, 1168
AflIII ACRYGT 1 cut(s) 295
AgsI TTSAA 5 cut(s) 170, 178, 686, 766, 1019
AjiI CACGTC 1 cut(s) 1075
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 2 cut(s) 150, 182
AluBI AGCT 7 cut(s) 135, 657, 850, 1022, 1082, 1132, 1188
AluI AGCT 7 cut(s) 135, 657, 850, 1022, 1082, 1132, 1188
AlwI GGATC 2 cut(s) 346, 585
Ama87I CYCGRG 1 cut(s) 995
AoxI GGCC 2 cut(s) 841, 895
ApeKI GCWGC 3 cut(s) 207, 539, 872
ApoI RAATTY 1 cut(s) 865
Asp700I GAANNNNTTC 1 cut(s) 1023
AsuC2I CCSGG 3 cut(s) 669, 996, 997
AsuHPI GGTGA 8 cut(s) 61, 146, 491, 509, 568, 613, 925, 1058
AsuII TTCGAA 3 cut(s) 380, 707, 1137
AvaI CYCGRG 1 cut(s) 995
BalI TGGCCA 1 cut(s) 843
BbsI GAAGAC 2 cut(s) 446, 610
BbvI GCAGC 3 cut(s) 219, 526, 859
BccI CCATC 2 cut(s) 584, 852
BcgI CGANNNNNNTGC 2 cut(s) 521, 555
BciT130I CCWGG 1 cut(s) 47
BciVI GTATCC 1 cut(s) 28
BcnI CCSGG 3 cut(s) 669, 996, 997
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 2 cut(s) 540, 770
BfuAI ACCTGC 1 cut(s) 294
BfuI GTATCC 1 cut(s) 28
BglII AGATCT 1 cut(s) 1090
BisI GCNGC 4 cut(s) 208, 540, 803, 873
BlsI GCNGC 4 cut(s) 209, 541, 804, 874
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 4 cut(s) 47, 669, 996, 997
BmeT110I CYCGRG 1 cut(s) 995
BmgBI CACGTC 1 cut(s) 1075
BmiI GGNNCC 1 cut(s) 428
BmrFI CCNGG 4 cut(s) 47, 669, 996, 997
BmsI GCATC 3 cut(s) 526, 574, 935
BpiI GAAGAC 2 cut(s) 446, 610
Bpu14I TTCGAA 3 cut(s) 380, 707, 1137
BpuEI CTTGAG 1 cut(s) 49
BpuMI CCSGG 3 cut(s) 669, 996, 997
BsaAI YACGTR 1 cut(s) 1101
BsaBI GATNNNNATC 2 cut(s) 971, 1053
BsaJI CCNNGG 4 cut(s) 346, 465, 995, 996
BsaWI WCCGGW 1 cut(s) 929
Bsc4I CCNNNNNNNGG 5 cut(s) 512, 574, 1001, 1034, 1168
Bse118I RCCGGY 1 cut(s) 1008
Bse1I ACTGG 2 cut(s) 499, 898
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 2 cut(s) 971, 1053
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 4 cut(s) 346, 465, 995, 996
BseGI GGATG 3 cut(s) 364, 781, 926
BseJI GATNNNNATC 2 cut(s) 971, 1053
BseLI CCNNNNNNNGG 5 cut(s) 512, 574, 1001, 1034, 1168
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 2 cut(s) 499, 898
BseRI GAGGAG 1 cut(s) 422
BseXI GCAGC 3 cut(s) 219, 526, 859
BseYI CCCAGC 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 2 cut(s) 843, 897
BsiHKCI CYCGRG 1 cut(s) 995
BsiSI CCGG 4 cut(s) 668, 930, 996, 1009
BslI CCNNNNNNNGG 5 cut(s) 512, 574, 1001, 1034, 1168
BsnI GGCC 2 cut(s) 843, 897
BsoBI CYCGRG 1 cut(s) 995
Bsp119I TTCGAA 3 cut(s) 380, 707, 1137
Bsp1407I TGTACA 2 cut(s) 372, 396
Bsp143I GATC 5 cut(s) 338, 499, 577, 1090, 1105
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 4 cut(s) 335, 625, 665, 803
BspANI GGCC 2 cut(s) 843, 897
BspHI TCATGA 2 cut(s) 580, 829
BspLI GGNNCC 1 cut(s) 428
BspMAI CTGCAG 2 cut(s) 544, 774
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 2 cut(s) 346, 585
BspT104I TTCGAA 3 cut(s) 380, 707, 1137
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 1008
BsrGI TGTACA 2 cut(s) 372, 396
BsrI ACTGG 2 cut(s) 499, 898
BssAI RCCGGY 1 cut(s) 1008
BssECI CCNNGG 4 cut(s) 346, 465, 995, 996
BssMI GATC 5 cut(s) 338, 499, 577, 1090, 1105
BssT1I CCWWGG 2 cut(s) 346, 465
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 1163
Bst6I CTCTTC 2 cut(s) 28, 700
BstAUI TGTACA 2 cut(s) 372, 396
BstBAI YACGTR 1 cut(s) 1101
BstBI TTCGAA 3 cut(s) 380, 707, 1137
BstC8I GCNNGC 2 cut(s) 733, 1010
BstDEI CTNAG 1 cut(s) 1189
BstDSI CCRYGG 1 cut(s) 346
BstF5I GGATG 3 cut(s) 364, 781, 926
BstKTI GATC 5 cut(s) 341, 502, 580, 1093, 1108
BstMBI GATC 5 cut(s) 338, 499, 577, 1090, 1105
BstMWI GCNNNNNNNGC 2 cut(s) 732, 802
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 796, 1183
BstSCI CCNGG 4 cut(s) 45, 667, 994, 995
BstSFI CTRYAG 2 cut(s) 540, 770
BstSNI TACGTA 1 cut(s) 1101
BstV1I GCAGC 3 cut(s) 219, 526, 859
BstV2I GAAGAC 2 cut(s) 446, 610
BstX2I RGATCY 1 cut(s) 1090
BstYI RGATCY 1 cut(s) 1090
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 2 cut(s) 843, 897
BtgI CCRYGG 1 cut(s) 346
BtrI CACGTC 1 cut(s) 1075
BtsCI GGATG 3 cut(s) 364, 781, 926
BtsI GCAGTG 2 cut(s) 245, 634
BtsIMutI CAGTG 2 cut(s) 245, 634
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 733, 1010
CciI TCATGA 2 cut(s) 580, 829
Cfr10I RCCGGY 1 cut(s) 1008
Cfr9I CCCGGG 1 cut(s) 995
CseI GACGC 1 cut(s) 199
CsiI ACCWGGT 1 cut(s) 45
Csp6I GTAC 5 cut(s) 373, 397, 492, 547, 933
CviQI GTAC 5 cut(s) 373, 397, 492, 547, 933
DdeI CTNAG 1 cut(s) 1189
DpnI GATC 5 cut(s) 340, 501, 579, 1092, 1107
DpnII GATC 5 cut(s) 338, 499, 577, 1090, 1105
EaeI YGGCCR 1 cut(s) 841
Eam1104I CTCTTC 2 cut(s) 28, 700
EarI CTCTTC 2 cut(s) 28, 700
EciI GGCGGA 1 cut(s) 654
Eco105I TACGTA 1 cut(s) 1101
Eco130I CCWWGG 2 cut(s) 346, 465
Eco88I CYCGRG 1 cut(s) 995
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 346, 465
ErhI CCWWGG 2 cut(s) 346, 465
FauI CCCGC 2 cut(s) 328, 632
Fnu4HI GCNGC 4 cut(s) 208, 540, 803, 873
FokI GGATG 3 cut(s) 351, 788, 913
Fsp4HI GCNGC 4 cut(s) 208, 540, 803, 873
FspBI CTAG 1 cut(s) 353
GluI GCNGC 4 cut(s) 208, 540, 803, 873
GsaI CCCAGC 1 cut(s) 434
HaeIII GGCC 2 cut(s) 843, 897
HapII CCGG 4 cut(s) 668, 930, 996, 1009
HgaI GACGC 1 cut(s) 199
HindIII AAGCTT 2 cut(s) 1020, 1130
HinfI GANTC 5 cut(s) 178, 308, 686, 979, 991
HpaII CCGG 4 cut(s) 668, 930, 996, 1009
HphI GGTGA 8 cut(s) 61, 146, 491, 509, 568, 613, 925, 1058
Hpy166II GTNNAC 5 cut(s) 375, 399, 600, 787, 935
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 6 cut(s) 41, 66, 581, 830, 976, 1066
Hpy8I GTNNAC 5 cut(s) 375, 399, 600, 787, 935
Hpy99I CGWCG 2 cut(s) 422, 536
HpyAV CCTTC 5 cut(s) 176, 371, 478, 887, 916
HpyCH4III ACNGT 1 cut(s) 1163
HpyCH4IV ACGT 3 cut(s) 295, 1074, 1100
HpyCH4V TGCA 5 cut(s) 542, 772, 875, 962, 1183
HpyF10VI GCNNNNNNNGC 2 cut(s) 732, 802
HpyF3I CTNAG 1 cut(s) 1189
HpySE526I ACGT 3 cut(s) 295, 1074, 1100
KroI GCCGGC 1 cut(s) 1008
KroNI GCCGGC 1 cut(s) 1010
Kzo9I GATC 5 cut(s) 338, 499, 577, 1090, 1105
Lsp1109I GCAGC 3 cut(s) 219, 526, 859
LweI GCATC 3 cut(s) 526, 574, 935
MabI ACCWGGT 1 cut(s) 45
MaeI CTAG 1 cut(s) 353
MaeII ACGT 3 cut(s) 295, 1074, 1100
MaeIII GTNAC 1 cut(s) 1096
MalI GATC 5 cut(s) 340, 501, 579, 1092, 1107
MboI GATC 5 cut(s) 338, 499, 577, 1090, 1105
MboII GAAGA 7 cut(s) 15, 272, 394, 446, 610, 687, 931
MflI RGATCY 1 cut(s) 1090
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 2 cut(s) 865, 952
MluNI TGGCCA 1 cut(s) 843
MlyI GAGTC 1 cut(s) 302
Mox20I TGGCCA 1 cut(s) 843
MroNI GCCGGC 1 cut(s) 1008
MroXI GAANNNNTTC 1 cut(s) 1023
MscI TGGCCA 1 cut(s) 843
MseI TTAA 4 cut(s) 474, 528, 651, 881
MslI CAYNNNNRTG 1 cut(s) 797
Msp20I TGGCCA 1 cut(s) 843
MspI CCGG 4 cut(s) 668, 930, 996, 1009
MspR9I CCNGG 4 cut(s) 47, 669, 996, 997
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 2 cut(s) 732, 802
NaeI GCCGGC 1 cut(s) 1010
NciI CCSGG 3 cut(s) 669, 996, 997
NcoI CCATGG 1 cut(s) 346
NdeII GATC 5 cut(s) 338, 499, 577, 1090, 1105
NgoMIV GCCGGC 1 cut(s) 1008
NlaIV GGNNCC 1 cut(s) 428
NmeAIII GCCGAG 1 cut(s) 231
NspI RCATGY 2 cut(s) 796, 1183
NspV TTCGAA 3 cut(s) 380, 707, 1137
PagI TCATGA 2 cut(s) 580, 829
PdiI GCCGGC 1 cut(s) 1010
PdmI GAANNNNTTC 1 cut(s) 1023
PfeI GAWTC 4 cut(s) 178, 686, 979, 991
PflMI CCANNNNNTGG 1 cut(s) 574
PkrI GCNGC 4 cut(s) 209, 541, 804, 874
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 1101
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 428
PstI CTGCAG 2 cut(s) 544, 774
PsuI RGATCY 1 cut(s) 1090
RsaI GTAC 5 cut(s) 374, 398, 493, 548, 934
RsaNI GTAC 5 cut(s) 373, 397, 492, 547, 933
RseI CAYNNNNRTG 1 cut(s) 797
SaqAI TTAA 4 cut(s) 474, 528, 651, 881
SatI GCNGC 4 cut(s) 208, 540, 803, 873
Sau3AI GATC 5 cut(s) 338, 499, 577, 1090, 1105
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 4 cut(s) 47, 669, 996, 997
SexAI ACCWGGT 1 cut(s) 45
SfaNI GCATC 3 cut(s) 526, 574, 935
SfcI CTRYAG 2 cut(s) 540, 770
SfuI TTCGAA 3 cut(s) 380, 707, 1137
SmaI CCCGGG 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SnaBI TACGTA 1 cut(s) 1101
Sse9I AATT 2 cut(s) 865, 952
SsiI CCGC 4 cut(s) 335, 625, 665, 803
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 4 cut(s) 45, 667, 994, 995
StyI CCWWGG 2 cut(s) 346, 465
TaaI ACNGT 1 cut(s) 1163
TaiI ACGT 3 cut(s) 298, 1077, 1103
TaqI TCGA 5 cut(s) 380, 502, 707, 1108, 1137
TasI AATT 2 cut(s) 865, 952
TatI WGTACW 4 cut(s) 372, 396, 491, 546
TauI GCSGC 1 cut(s) 805
TfiI GAWTC 4 cut(s) 178, 686, 979, 991
Tru1I TTAA 4 cut(s) 474, 528, 651, 881
Tru9I TTAA 4 cut(s) 474, 528, 651, 881
TscAI CASTG 2 cut(s) 252, 634
TseI GCWGC 3 cut(s) 207, 539, 872
TspDTI ATGAA 5 cut(s) 133, 353, 514, 906, 932
TspMI CCCGGG 1 cut(s) 995
TspRI CASTG 2 cut(s) 252, 634
Van91I CCANNNNNTGG 1 cut(s) 574
XapI RAATTY 1 cut(s) 865
XceI RCATGY 2 cut(s) 796, 1183
XmaI CCCGGG 1 cut(s) 995
XmnI GAANNNNTTC 1 cut(s) 1023
XspI CTAG 1 cut(s) 353
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.