Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0000369

Physical Location & Seq

Genomic Coordinates Reverse (-)

4110187 .. 4111119

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG061800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGTTCTCATTGCTTGGCAGAAAACTTTTCGAGACTAGAGTTTACGGCATCTGTCCTCGATGATTCGGTTGAGAAGATATATATTGTGGGATCTAGTAATGGTTTAGTCTGCCTTCATTTTCTTGGAGATCGAACCAAAACGGAGTCAATCATCGTATGGAACCCAGTAACAGAGCAATACAGGAAACTTCCTAAGCCATTGTCTTTTGAGTGGGATAAGCTGACCGAACCACTTGTAGGTTTTGGGTTCATTCAGGACCATGGCATGAATAGTACCGATTACAAAGTGGTGAGGATTTCAAGAAGCAAAGGTGATATAAGACTTGGTTTAGTTGGTTATGTAACCCAAGTCTTCACCCGAAGTGCAAAATCATGGAGAGTAGTTAAAGAGTGTAACCCATCACGTTATCTGATTTATAAACAGTCTTCCATTACTTTGAATGGAGTGTTGTATTCCTTGGCATGGACTAGGACGGGCGTCAACATGGCATACAGCGTTTTCTCATTCAATCTGCATGATGAGGTATTTCATAACATACAGTTACCGCAGTCTAGTACTATCAGTGTTGGAAGACTCTTTGTATGGAACAATTTGGTTGCCTATTCGACATGGGCTGATCATAGTTGCCAGTATGATGTTTGGGTGATGACAACAGAATCTAGAGATGATACACAAATGCCAGCTAACTGGAATTGGACTAAACAAGTTACAATCAAACCTCCGATTAGATGGTATTATGGACCTCCCTCTGGAGTTTGGAATGATCAATTTATTTTTTACAAGGGCCATACTCACAGTAAACGAGGATCTGAACTATATCTGTATACGTATGACCTTGCAGATCAGAAAGAGAGGATGCTTTTAGGACCAGAAACTGATTACTGTTGCCGTCAAGTGGTAGATTACGTGGAGAGCCTAGTTCCGGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0006139 GO:0006351 GO:0006366 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0019904 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0046483 GO:0070063 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD zf-RING_2

Protein Analysis

310

Amino Acids

35.85

Weight (kDa)

7.07

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	15 - 242	2.2e-19	F-box associated beta propeller domain
FBA_1	PF07734	24 - 310	1.7e-19	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000369)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12960 FvH4_1g13711 FvH4_1g13821 FvH4_1g13851 FvH4_2g14150 FvH4_2g21221 FvH4_2g29121 FvH4_5g08370 FvH4_6g01270 FvH4_6g01284 FvH4_6g17580
malus_domestica	MD14G1060300.v1.1 MD17G1230300.v1.1
prunus_persica	Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.3G110000_v2.0.a1 Prupe.6G256100_v2.0.a1
pyrus_communis	pycom17g23320
rosa_chinensis	RchiOBHm_Chr1g0317281 RchiOBHm_Chr2g0158871 RchiOBHm_Chr3g0471851 RchiOBHm_Chr6g0287731 RchiOBHm_Chr6g0287821 RchiOBHm_Chr7g0183811
rosa_laevigata	RLG00000005018 RLG00000005021 RLG00000012470 RLG00000017037 RLG00000021119 RLG00000024124 RLG00000029577 RLG00000030613 RLG00000030616
rosa_multiflora	Rmu_sc0000423.1_g000029 Rmu_sc0002267.1_g000011 Rmu_sc0003335.1_g000004 Rmu_sc0003610.1_g000042 Rmu_sc0003877.1_g000013 Rmu_sc0005698.1_g000001 Rmu_sc0007593.1_g000004 Rmu_sc0013966.1_g000003 Rmu_sc0015519.1_g000001
rosa_roxburghii	Rroxscaffold_2G00141640 Rroxscaffold_3G00270160 Rroxscaffold_3G00270190 Rroxscaffold_4G00327520 Rroxscaffold_6G00409480 Rroxscaffold_7G00180790 Rroxscaffold_7G00181110 Rroxscaffold_7G00181180 Rroxscaffold_7G00181240
rosa_rugosa	Rorug01G0015500 Rorug02G0095300 Rorug02G0473000 Rorug03G0120700 Rorug06G0191300 Rorug06G0191500 Rorug06G0460600 Rorug06G0461000
rosa_samantha	Rh1AG026600 Rh1BG022800 Rh1DG047100 Rh1DG054100 Rh2AG142300 Rh2AG142400 Rh2BG147400 Rh2BG147500 Rh2BG551700 Rh2CG148700 Rh2CG148800 Rh2CG522400 Rh2DG148000 Rh2DG148100 Rh2DG561500 Rh3AG172000 Rh3BG197400 Rh3CG188400 Rh3CG196000 Rh3DG176900 Rh6AG301500 Rh6AG301800 Rh6BG307300 Rh6BG307800 Rh6DG299000 Rh6DG299200 Rh6DG300300 Rh6DG300400 Rh7AG061300 Rh7AG061700 Rh7BG061300 Rh7BG061400 Rh7BG061800 Rh7CG063000 Rh7CG063200 Rh7CG063300 Rh7DG061400
rosa_wichuraiana	Rw1G001850 Rw2G011170 Rw2G044620 Rw3G016850 Rw6G026030 Rw6G026070 Rw7G005090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	827
AciI	CCGC	1 cut(s)	548
AclWI	GGATC	2 cut(s)	100, 817
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	2 cut(s)	277, 559
AfiI	CCNNNNNNNGG	5 cut(s)	239, 465, 752, 898, 925
AgsI	TTSAA	3 cut(s)	303, 442, 511
AluBI	AGCT	2 cut(s)	223, 686
AluI	AGCT	2 cut(s)	223, 686
Alw26I	GTCTC	1 cut(s)	28
AlwI	GGATC	2 cut(s)	100, 817
AlwNI	CAGNNNCTG	1 cut(s)	878
AoxI	GGCC	1 cut(s)	787
AspS9I	GGNCC	4 cut(s)	259, 743, 787, 869
AsuHPI	GGTGA	4 cut(s)	304, 326, 349, 658
AvaII	GGWCC	3 cut(s)	259, 743, 869
BbsI	GAAGAC	3 cut(s)	346, 420, 580
BccI	CCATC	2 cut(s)	409, 726
BceAI	ACGGC	2 cut(s)	63, 876
BclI	TGATCA	2 cut(s)	619, 766
BcoDI	GTCTC	1 cut(s)	28
BfaI	CTAG	6 cut(s)	38, 96, 471, 555, 663, 920
BmcAI	AGTACT	1 cut(s)	559
Bme18I	GGWCC	3 cut(s)	259, 743, 869
BmgT120I	GGNCC	4 cut(s)	259, 743, 787, 869
BmiI	GGNNCC	1 cut(s)	164
BmrI	ACTGGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	59, 849
BmuI	ACTGGG	1 cut(s)	161
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	3 cut(s)	346, 420, 580
BpmI	CTGGAG	1 cut(s)	774
Bpu10I	CCTNAGC	1 cut(s)	195
BsaAI	YACGTR	2 cut(s)	831, 910
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	262, 459
BsaWI	WCCGGW	1 cut(s)	925
Bsc4I	CCNNNNNNNGG	5 cut(s)	239, 465, 752, 898, 925
Bse1I	ACTGG	3 cut(s)	167, 631, 695
Bse3DI	GCAATG	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	262, 459
BseGI	GGATG	1 cut(s)	864
BseLI	CCNNNNNNNGG	5 cut(s)	239, 465, 752, 898, 925
BseMI	GCAATG	1 cut(s)	10
BseNI	ACTGG	3 cut(s)	167, 631, 695
BshFI	GGCC	1 cut(s)	789
BsiSI	CCGG	1 cut(s)	926
BslI	CCNNNNNNNGG	5 cut(s)	239, 465, 752, 898, 925
BsmAI	GTCTC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	789
Bsp143I	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
Bsp19I	CCATGG	1 cut(s)	262
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	2 cut(s)	100, 817
BsrDI	GCAATG	1 cut(s)	10
BsrI	ACTGG	3 cut(s)	167, 631, 695
BssECI	CCNNGG	2 cut(s)	262, 459
BssMI	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
BssNAI	GTATAC	1 cut(s)	828
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	262, 459
Bst1107I	GTATAC	1 cut(s)	828
Bst4CI	ACNGT	4 cut(s)	426, 543, 800, 887
BstACI	GRCGYC	1 cut(s)	480
BstBAI	YACGTR	2 cut(s)	831, 910
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	864
BstKTI	GATC	6 cut(s)	95, 133, 622, 769, 812, 847
BstMAI	GTCTC	1 cut(s)	28
BstMBI	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSNI	TACGTA	1 cut(s)	831
BstV2I	GAAGAC	3 cut(s)	346, 420, 580
BstX2I	RGATCY	2 cut(s)	92, 809
BstXI	CCANNNNNNTGG	1 cut(s)	690
BstYI	RGATCY	2 cut(s)	92, 809
BstZ17I	GTATAC	1 cut(s)	828
BsuRI	GGCC	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	864
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	1 cut(s)	684
CaiI	CAGNNNCTG	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	259, 743, 787, 869
CseI	GACGC	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	276, 558
CviAII	CATG	7 cut(s)	263, 268, 375, 465, 487, 518, 612
CviJI	RGCY	6 cut(s)	199, 223, 617, 686, 789, 918
CviKI_1	RGCY	6 cut(s)	199, 223, 617, 686, 789, 918
CviQI	GTAC	2 cut(s)	276, 558
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	6 cut(s)	94, 132, 621, 768, 811, 846
DpnII	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
Eco105I	TACGTA	1 cut(s)	831
Eco130I	CCWWGG	2 cut(s)	262, 459
Eco47I	GGWCC	3 cut(s)	259, 743, 869
EcoT14I	CCWWGG	2 cut(s)	262, 459
ErhI	CCWWGG	2 cut(s)	262, 459
FaeI	CATG	7 cut(s)	266, 271, 378, 468, 490, 521, 615
FatI	CATG	7 cut(s)	262, 267, 374, 464, 486, 517, 611
FbaI	TGATCA	2 cut(s)	619, 766
FblI	GTMKAC	1 cut(s)	827
FokI	GGATG	1 cut(s)	871
FspBI	CTAG	6 cut(s)	38, 96, 471, 555, 663, 920
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	789
HapII	CCGG	1 cut(s)	926
HgaI	GACGC	1 cut(s)	469
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	7 cut(s)	266, 271, 378, 468, 490, 521, 615
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	65, 146, 576, 659
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	4 cut(s)	304, 326, 349, 658
Hpy166II	GTNNAC	4 cut(s)	45, 484, 803, 828
Hpy188I	TCNGA	4 cut(s)	414, 726, 814, 849
Hpy188III	TCNNGA	5 cut(s)	33, 257, 303, 663, 753
Hpy8I	GTNNAC	4 cut(s)	45, 484, 803, 828
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	4 cut(s)	426, 543, 800, 887
HpyCH4IV	ACGT	3 cut(s)	406, 830, 909
HpyCH4V	TGCA	3 cut(s)	368, 517, 842
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	3 cut(s)	406, 830, 909
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	7 cut(s)	266, 271, 378, 468, 490, 521, 615
Ksp22I	TGATCA	2 cut(s)	619, 766
Kzo9I	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
LpnPI	CCDG	8 cut(s)	169, 180, 242, 644, 676, 696, 738, 885
LweI	GCATC	2 cut(s)	59, 849
MaeI	CTAG	6 cut(s)	38, 96, 471, 555, 663, 920
MaeII	ACGT	3 cut(s)	406, 830, 909
MaeIII	GTNAC	5 cut(s)	169, 343, 395, 543, 709
MalI	GATC	6 cut(s)	94, 132, 621, 768, 811, 846
MboI	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
MboII	GAAGA	4 cut(s)	88, 346, 420, 585
MflI	RGATCY	2 cut(s)	92, 809
MluCI	AATT	3 cut(s)	592, 694, 770
MlyI	GAGTC	2 cut(s)	155, 570
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	8 cut(s)	68, 288, 517, 732, 756, 760, 800, 849
MseI	TTAA	1 cut(s)	387
MspI	CCGG	1 cut(s)	926
NcoI	CCATGG	1 cut(s)	262
NdeII	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
NlaIII	CATG	7 cut(s)	266, 271, 378, 468, 490, 521, 615
NlaIV	GGNNCC	1 cut(s)	164
PfeI	GAWTC	2 cut(s)	65, 659
PleI	GAGTC	2 cut(s)	154, 570
PpsI	GAGTC	2 cut(s)	154, 570
Ppu21I	YACGTR	2 cut(s)	831, 910
PshAI	GACNNNNGTC	1 cut(s)	479
PsiI	TTATAA	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	4 cut(s)	259, 743, 787, 869
PstNI	CAGNNNCTG	1 cut(s)	878
PsuI	RGATCY	2 cut(s)	92, 809
RsaI	GTAC	2 cut(s)	277, 559
RsaNI	GTAC	2 cut(s)	276, 558
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	6 cut(s)	92, 130, 619, 766, 809, 844
Sau96I	GGNCC	4 cut(s)	259, 743, 787, 869
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	155, 570
SfaNI	GCATC	2 cut(s)	59, 849
SinI	GGWCC	3 cut(s)	259, 743, 869
SnaBI	TACGTA	1 cut(s)	831
Sse9I	AATT	3 cut(s)	592, 694, 770
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	6 cut(s)	38, 96, 471, 555, 663, 920
StyI	CCWWGG	2 cut(s)	262, 459
TaaI	ACNGT	4 cut(s)	426, 543, 800, 887
TaiI	ACGT	3 cut(s)	409, 833, 912
TaqI	TCGA	4 cut(s)	32, 60, 133, 608
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	592, 694, 770
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	65, 659
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	107, 241, 284, 521
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	1 cut(s)	571
VpaK11BI	GGWCC	3 cut(s)	259, 743, 869
XbaI	TCTAGA	1 cut(s)	662
XmiI	GTMKAC	1 cut(s)	827
XspI	CTAG	6 cut(s)	38, 96, 471, 555, 663, 920
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.